genome.fa.s195.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505380--505703	28	11.5	28	84	6	363	32	29	18	19	1.96
505380--505688	29	10.9	28	84	9	371	31	30	19	19	1.96
505374--505688	114	2.8	113	89	3	456	30	30	18	20	1.96
505768--505835	21	3.2	21	64	25	52	26	23	17	32	1.97
505745--506625	49	18.0	49	79	7	794	24	25	16	32	1.96
505745--506465	242	3.0	242	93	0	1190	24	25	17	32	1.96
506231--506369	43	3.1	43	76	11	143	22	25	18	33	1.97
506274--506635	52	7.1	51	75	6	259	25	26	14	32	1.95
506274--506464	101	1.9	101	85	0	265	24	26	16	32	1.96
507169--507221	19	2.7	20	76	2	63	39	13	16	30	1.87
507209--507234	13	2.0	13	100	0	52	38	15	15	30	1.88
507262--507327	33	2.0	33	85	5	89	31	15	13	39	1.86
516940--516987	22	2.2	22	81	7	53	64	20	2	12	1.37
517255--517371	51	2.3	51	90	0	180	34	10	26	29	1.89
517304--517791	79	6.2	78	83	4	514	34	12	25	27	1.92
517195--517450	130	2.0	131	87	3	374	35	11	24	28	1.91
517301--517791	157	3.1	158	80	2	592	34	12	25	27	1.92
517336--517796	237	1.9	238	85	3	642	34	13	24	27	1.92
517751--517819	28	2.5	28	85	4	86	27	11	31	28	1.92
517673--517895	107	2.1	107	83	0	275	32	12	27	27	1.92
517780--517933	79	1.9	79	84	5	204	33	10	27	28	1.90
520475--520500	7	3.7	7	100	0	52	76	11	0	11	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520613--520637	13	1.9	13	100	0	50	36	16	16	32	1.90
520592--520664	32	2.3	32	92	0	119	34	12	17	35	1.88
520686--520742	20	2.8	20	81	7	71	31	15	10	42	1.81
523031--523416	52	7.4	51	71	13	221	30	26	12	30	1.93
523140--523213	27	2.7	28	82	2	96	22	35	22	18	1.96
523031--523527	263	1.9	262	88	3	757	29	27	13	29	1.94
523430--523652	79	2.8	78	78	8	218	26	29	15	28	1.96
532126--532160	11	3.3	11	88	8	54	88	8	2	0	0.61
532136--532170	15	2.3	15	90	0	52	88	8	2	0	0.61
532125--532160	10	3.5	10	88	7	54	86	11	2	0	0.68
533155--533808	55	11.3	58	84	9	674	26	27	20	25	1.99
533363--533449	28	3.1	28	64	15	72	26	27	19	26	1.99
533674--533761	26	3.3	26	67	14	79	26	31	20	21	1.98
534625--534714	19	5.1	18	71	22	75	35	12	15	36	1.85
534671--534695	13	1.9	13	100	0	50	36	16	16	32	1.90
534650--534722	32	2.3	32	97	0	137	34	12	17	35	1.88
534766--534791	13	2.0	13	100	0	52	30	15	15	38	1.88
534748--534811	33	1.9	33	84	12	87	28	15	10	45	1.80
537152--537537	52	7.4	51	68	13	151	31	26	11	30	1.91
537259--537334	27	2.8	28	86	6	102	23	34	21	21	1.97
537317--537538	52	4.3	52	81	4	225	30	27	11	31	1.91
537551--537755	79	2.6	78	80	4	223	23	31	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541962--542060	20	4.8	20	79	9	101	38	9	15	37	1.79
543446--543479	17	1.9	18	94	5	61	76	11	0	11	1.02
543569--543619	21	2.5	21	90	3	77	74	7	0	17	1.05
544187--544227	14	2.7	14	85	14	55	51	0	0	48	1.00
550010--550039	2	15.0	2	100	0	60	50	0	0	50	1.00
555970--556030	19	3.6	18	70	25	60	34	11	16	37	1.85
555970--556043	32	2.3	32	90	0	121	33	13	16	36	1.88
556060--556135	20	3.8	20	80	13	84	35	15	11	36	1.85
564282--564378	38	3.0	31	73	22	83	27	27	13	30	1.94
564307--564380	38	2.0	37	91	2	121	24	31	12	32	1.92
565295--565379	32	2.7	32	90	0	134	31	10	18	38	1.85
567171--567266	32	3.0	32	96	1	174	34	10	18	36	1.85
567170--567283	19	6.6	19	71	23	108	33	9	18	38	1.83
567361--567489	52	2.5	52	97	0	240	34	17	19	27	1.95
572426--572612	88	2.1	88	95	0	338	29	25	21	23	1.99
575175--575214	20	2.0	20	85	9	55	80	5	15	0	0.88
576206--576333	30	4.3	30	89	1	195	21	26	16	35	1.95
576208--576325	60	2.0	60	96	0	218	23	25	17	33	1.97
576402--576454	27	2.0	27	92	0	88	24	30	13	32	1.93
576461--576542	28	2.9	27	83	9	83	35	28	18	18	1.94
576541--577526	49	20.1	49	78	8	947	23	25	18	32	1.97
576541--577526	101	10.1	100	86	5	1093	23	25	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576555--577417	150	5.9	147	84	6	1048	23	25	19	31	1.98
578158--578196	21	1.9	20	89	5	60	38	15	10	35	1.81
578233--578316	32	2.6	32	94	0	141	30	13	19	36	1.89
578362--578389	13	2.2	13	100	0	56	28	14	17	39	1.89
581605--581648	23	2.0	23	86	4	63	36	9	9	45	1.68
584500--584550	21	2.4	22	80	9	61	23	11	3	60	1.47
585967--586023	21	2.8	21	83	2	80	35	17	15	31	1.92
586081--586145	33	2.0	32	87	3	94	40	16	13	29	1.88
586134--586172	20	1.9	21	94	5	71	25	15	23	35	1.94
588309--588482	84	2.1	83	81	9	201	37	7	19	35	1.80
590905--591004	51	2.0	51	87	0	146	31	23	16	30	1.96
596958--597046	39	2.3	39	96	0	160	22	22	31	23	1.98
597015--597146	51	2.7	49	81	9	151	30	18	25	25	1.98
597109--597321	87	2.5	86	86	2	309	26	18	28	26	1.98
597107--597559	48	10.3	43	74	13	314	28	18	26	26	1.98
597196--597559	43	8.2	43	78	11	308	29	18	26	25	1.98
596973--597544	226	2.6	218	83	6	675	28	18	27	26	1.98
597395--597462	22	3.2	22	61	23	54	32	19	27	20	1.97
597332--597559	85	2.6	88	83	5	291	30	17	25	25	1.98
597550--598290	33	22.8	33	75	11	573	35	13	31	19	1.90
597552--598037	68	7.5	62	76	9	275	36	13	30	19	1.90
597744--598290	68	8.3	67	78	9	502	35	13	31	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598012--598064	27	2.0	27	92	0	88	26	15	35	22	1.93
597777--598290	129	4.0	127	81	6	484	35	13	31	19	1.90
598141--598193	27	2.0	27	88	0	79	28	16	35	18	1.93
598295--598746	31	14.6	30	85	6	550	31	15	29	23	1.95
598295--598746	94	4.9	91	89	3	636	31	15	29	23	1.95
599406--599462	31	1.9	28	86	10	78	36	3	19	40	1.69
603173--603203	12	2.6	12	94	0	53	48	6	25	19	1.72
607104--607133	13	2.3	13	100	0	60	40	16	13	30	1.87
607086--607151	33	2.0	33	91	5	107	43	13	13	28	1.82
607182--607235	19	2.8	18	77	20	63	31	16	11	40	1.84
607423--608053	48	13.9	49	71	13	256	29	17	26	25	1.98
607517--608057	48	12.3	43	72	13	305	29	18	26	25	1.98
607471--607820	87	4.0	87	88	1	468	27	18	28	26	1.98
607609--607760	39	3.7	39	72	14	133	28	18	26	26	1.98
607829--608057	43	5.2	43	80	6	251	32	17	24	25	1.97
607901--607968	24	3.0	24	66	27	67	32	16	25	26	1.96
607780--608057	86	3.1	89	79	6	303	31	17	25	25	1.97
608119--608200	27	3.0	27	92	0	128	24	15	35	24	1.94
608228--608381	33	4.6	32	80	4	110	40	11	28	18	1.86
608175--608402	101	2.3	101	88	0	321	38	11	30	20	1.88
608173--608688	34	15.7	33	77	10	412	37	12	30	19	1.89
608337--608578	60	3.9	61	76	9	254	35	13	31	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608377--608429	27	2.0	27	92	0	88	26	15	35	22	1.93
608276--608659	129	3.0	129	88	0	554	36	12	30	20	1.90
608506--608558	27	2.0	27	96	0	97	28	15	33	22	1.94
608276--608688	163	2.6	156	79	8	418	36	13	30	19	1.90
608526--608678	69	2.2	70	80	12	183	39	12	30	16	1.86
608693--609245	31	17.9	30	83	7	628	32	14	29	23	1.94
608693--609248	94	6.0	92	90	3	753	32	14	29	23	1.94
609897--609953	31	1.9	28	86	10	78	36	3	19	40	1.69
610250--610275	9	2.9	9	100	0	52	0	11	0	88	0.52
617564--617591	13	2.2	13	100	0	56	39	17	14	28	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12