genome.fa.s195.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1914327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  9  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186681--1186743	32	1.9	33	90	3	101	34	17	15	31	1.92
1195022--1195150	52	2.5	52	92	0	231	27	19	19	34	1.96
1195159--1195183	13	1.9	13	100	0	50	36	16	16	32	1.90
1195255--1195279	13	1.9	13	100	0	50	32	16	16	36	1.90
1195947--1196268	105	3.1	103	78	6	235	33	16	25	24	1.96
1195947--1196275	52	6.4	50	81	5	284	33	16	25	24	1.95
1195983--1196275	49	5.8	49	81	6	271	33	17	24	24	1.96
1196336--1196566	30	7.8	30	83	3	245	21	17	31	29	1.96
1196341--1196566	59	3.8	59	85	2	294	21	17	30	30	1.96
1196539--1196653	35	3.4	34	83	9	130	37	13	31	18	1.89
1196546--1196648	35	3.0	34	85	4	134	35	12	32	19	1.89
1196687--1196776	32	2.8	32	86	1	117	33	15	32	18	1.93
1196757--1196843	28	3.0	28	79	12	104	18	14	33	33	1.92
1198263--1198381	1	119.0	1	69	0	67	0	5	10	84	0.79
1198256--1198335	32	2.5	33	93	6	137	0	6	11	82	0.83
1198278--1198381	47	2.2	47	91	8	167	0	3	11	84	0.74
1198301--1198398	47	2.1	46	83	5	117	2	7	13	77	1.06
1215041--1215091	20	2.5	21	87	9	70	33	19	7	39	1.81
1217882--1218222	93	3.7	93	79	3	267	34	16	10	38	1.84
1223163--1223210	16	2.9	16	79	11	53	4	18	0	77	0.93
1225308--1225355	23	2.1	23	100	0	96	39	8	16	35	1.79
1228276--1228395	58	2.1	58	81	6	136	48	15	8	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228485--1228836	58	6.1	57	76	5	226	45	16	10	27	1.80
1228485--1228821	172	2.0	173	85	2	455	46	15	10	27	1.79
1228504--1228826	114	2.8	113	78	7	294	46	16	10	26	1.79
1230143--1230201	21	2.8	21	86	0	73	61	0	22	16	1.35
1231253--1231288	17	2.1	17	100	0	72	33	16	16	33	1.92
1231741--1231766	13	2.0	13	100	0	52	38	7	7	46	1.61
1233949--1234140	97	2.0	97	96	0	357	32	16	16	33	1.92
1234012--1234081	34	2.1	35	86	10	101	37	15	12	34	1.86
1234108--1234163	19	2.8	21	81	10	71	35	17	12	33	1.88
1234149--1234175	13	2.1	13	100	0	54	48	14	7	29	1.71
1234714--1234805	16	5.1	17	71	27	57	29	32	1	36	1.65
1242804--1242867	33	1.9	33	87	12	96	31	17	14	37	1.89
1242824--1242854	13	2.4	13	94	0	53	35	12	16	35	1.87
1242900--1242969	34	2.1	35	86	10	101	35	14	14	35	1.86
1242804--1243028	97	2.3	97	94	0	389	31	16	16	35	1.91
1242996--1243051	19	2.8	21	83	10	80	33	17	14	33	1.90
1244009--1244033	13	1.9	13	100	0	50	32	16	20	32	1.94
1244493--1244560	36	1.9	35	87	3	100	32	11	27	27	1.92
1244528--1244590	31	2.1	30	85	8	83	31	12	25	30	1.93
1245340--1245380	13	3.2	13	85	0	64	36	17	14	31	1.90
1245381--1245451	17	4.2	17	68	20	58	46	9	21	22	1.80
1246025--1246070	11	4.5	10	80	20	51	2	15	2	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249035--1249069	15	2.2	16	90	5	54	28	0	11	60	1.32
1249890--1249914	5	5.0	5	100	0	50	60	20	0	20	1.37
1255983--1256039	19	2.9	19	87	10	80	31	17	15	35	1.92
1258277--1258301	13	1.9	13	100	0	50	32	16	16	36	1.90
1258310--1258418	52	2.1	52	96	0	200	34	17	17	30	1.93
1271518--1271841	92	3.5	91	78	5	328	33	16	10	39	1.83
1276804--1276837	16	2.1	16	88	5	50	2	20	0	76	0.92
1281604--1281656	21	2.6	21	88	5	74	32	15	13	39	1.85
1285580--1285932	58	6.1	58	75	5	255	45	15	10	27	1.80
1285598--1285919	116	2.8	116	81	4	310	46	15	10	27	1.79
1285439--1285932	174	2.8	173	79	5	505	45	15	11	27	1.81
1291974--1292011	20	1.9	20	94	0	67	36	15	7	39	1.77
1292054--1292117	32	2.0	33	87	3	94	40	17	15	26	1.89
1292106--1292144	20	1.9	21	94	5	71	25	15	23	35	1.94
1294783--1294844	32	1.9	33	83	9	83	35	16	11	37	1.84
1294910--1294940	13	2.4	13	94	0	53	35	16	9	38	1.81
1297055--1297115	21	2.9	21	87	0	77	65	0	16	18	1.27
1297130--1297185	21	2.7	21	76	15	62	50	12	16	21	1.78
1298237--1298301	32	2.0	32	84	3	85	26	16	16	40	1.90
1300617--1300664	21	2.3	21	82	7	62	62	4	12	20	1.46
1304565--1304608	13	3.4	13	93	0	79	31	15	15	36	1.90
1309633--1309833	52	3.9	52	95	1	341	29	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1309822--1309846	13	1.9	13	100	0	50	36	16	16	32	1.90
1309908--1309932	13	1.9	13	100	0	50	32	16	16	36	1.90
1309990--1310031	21	2.0	21	90	0	66	35	14	14	35	1.86
1311281--1311372	44	2.1	45	82	10	109	31	19	26	22	1.98
1311408--1311858	29	15.3	29	71	20	196	22	17	25	34	1.96
1311424--1311665	89	2.7	88	76	15	235	22	18	25	33	1.96
1311680--1311765	32	2.7	32	86	10	122	23	18	22	36	1.95
1311655--1311917	91	3.0	88	76	16	251	23	17	24	34	1.96
1311717--1311850	59	2.3	60	80	17	156	18	17	26	36	1.94
1311636--1311820	27	6.5	27	74	21	118	20	17	24	37	1.94
1311424--1311839	208	2.0	211	83	11	532	22	18	25	34	1.96
1311636--1311850	116	1.8	113	80	12	256	20	18	25	36	1.94
1498205--1498329	20	5.8	20	73	17	106	32	14	11	41	1.81
1501190--1501262	20	3.6	20	77	3	92	36	13	17	31	1.89
1501208--1501283	21	3.7	21	78	3	100	43	11	15	28	1.83
1501190--1501283	41	2.3	41	100	0	188	40	12	17	29	1.86
1501322--1501347	13	2.0	13	100	0	52	38	15	15	30	1.88
1505409--1505447	15	2.6	15	87	0	51	53	15	17	12	1.72
1507445--1507523	20	3.7	21	75	15	72	26	13	15	44	1.84
1507510--1507548	13	3.0	13	96	0	69	30	17	15	35	1.91
1509989--1510061	20	3.6	20	77	3	92	36	13	17	31	1.89
1510007--1510082	21	3.7	21	78	3	100	43	11	15	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1509989--1510082	41	2.3	41	100	0	188	40	12	17	29	1.86
1510121--1510146	13	2.0	13	100	0	52	38	15	15	30	1.88
1512306--1512825	28	18.7	28	83	5	583	30	28	16	24	1.97
1512703--1512825	30	4.2	29	89	6	171	33	31	15	19	1.93
1512703--1512825	58	2.1	58	86	8	171	33	31	15	19	1.93
1513523--1513555	15	2.2	15	94	0	57	60	0	33	6	1.21
1513551--1513593	22	2.0	22	86	8	63	39	2	25	32	1.69
1514121--1514170	19	2.5	20	84	12	68	30	14	12	44	1.81
1514236--1514321	13	7.5	13	68	28	70	32	12	18	36	1.89
1514220--1514321	33	3.1	33	91	2	161	31	12	19	36	1.90
1514252--1514319	20	3.8	20	74	25	78	32	11	19	36	1.88
1515065--1515105	20	2.0	21	90	9	66	41	19	17	21	1.90
1515651--1515694	23	1.9	23	81	9	54	29	4	22	43	1.73
1516527--1516551	13	1.9	13	100	0	50	32	16	16	36	1.90
1516683--1516735	20	2.7	20	100	0	106	33	15	15	35	1.88
1518250--1518286	3	12.3	3	88	0	56	40	0	29	29	1.57
1519242--1519266	13	1.9	13	100	0	50	32	16	16	36	1.90
1519338--1519400	19	3.6	19	76	24	84	34	19	15	30	1.93
1519357--1519413	13	3.9	13	76	24	60	33	17	15	33	1.92
1519337--1519436	32	3.1	32	94	1	164	35	18	15	32	1.91
1523500--1523529	15	2.0	15	93	0	51	50	16	20	13	1.78
1523489--1523529	15	2.7	16	81	11	50	46	17	19	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525600--1525636	13	2.8	13	95	0	65	35	16	16	32	1.91
1527645--1527781	68	2.0	69	84	4	179	35	16	22	25	1.95
1527733--1527852	51	2.4	51	98	0	231	32	17	25	25	1.97
1527863--1528248	51	7.4	52	71	14	237	31	12	27	29	1.93
1527863--1528086	52	4.3	52	79	6	224	31	12	26	29	1.93
1529197--1529292	43	2.2	43	94	0	165	8	23	36	31	1.85
1529240--1529360	55	2.2	55	84	0	152	8	23	37	31	1.84
1529668--1529819	26	5.9	26	96	0	279	11	28	7	51	1.65
1529839--1529890	24	2.2	24	83	12	72	19	0	0	80	0.71
1529839--1529889	20	2.5	20	84	12	68	19	0	0	80	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12