Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2
Parameters: 2 7 7 80 10 50 1000
Length:  5794061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  38  of  38  ( 4457 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5783356--5783446
29
3.1
28
67
17
69
51
12
6
29
1.64
5783349--5783529
58
3.1
56
78
7
157
49
12
7
30
1.69
5783412--5783588
58
3.1
58
79
1
167
48
12
6
31
1.68
5784409--5784560
78
1.9
78
82
5
191
39
15
10
34
1.82
5786208--5786232
11
2.3
11
100
0
50
8
16
0
76
1.02
5786765--5786831
1
67.0
1
89
0
89
92
0
1
5
0.44
5786762--5786833
24
3.1
24
86
11
105
86
0
2
11
0.68
5786765--5786831
33
2.0
33
91
0
107
92
0
1
5
0.44
5786836--5786892
21
2.7
21
97
0
105
33
10
19
36
1.86
5786948--5787015
19
3.9
19
78
21
85
35
11
14
38
1.83
5786969--5786993
13
1.9
13
100
0
50
36
16
16
32
1.90
5786950--5787012
32
2.0
32
96
0
117
34
12
15
36
1.86
5787055--5787080
13
2.0
13
100
0
52
30
15
15
38
1.88
5787035--5787101
33
2.0
33
88
0
98
25
14
16
43
1.86
5789441--5789722
102
2.8
102
84
6
365
29
25
12
32
1.92
5789441--5789728
153
1.9
153
82
5
359
28
26
12
32
1.92
5789442--5789728
51
5.6
50
83
4
308
28
26
12
32
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38

The End!