genome.fa.s330.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Length:  1763736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190047--1190355	61	5.4	56	79	12	303	26	27	21	24	1.99
1190211--1190510	155	1.9	155	93	1	512	25	29	19	25	1.99
1190100--1190770	265	2.5	263	84	6	875	25	28	20	25	1.99
1190375--1190614	55	4.3	55	82	11	297	27	28	21	22	1.99
1190631--1190775	62	2.5	57	80	12	168	25	28	21	24	1.99
1190757--1190911	42	3.6	43	82	12	176	18	29	15	36	1.92
1190886--1191056	94	1.8	94	94	0	306	26	30	21	22	1.98
1190980--1191111	62	2.3	58	84	9	162	26	28	21	23	1.99
1191141--1191335	46	4.4	46	79	13	212	20	28	13	36	1.91
1190545--1191247	342	2.1	340	90	5	1109	22	28	17	30	1.97
1191099--1191368	42	6.2	42	72	18	171	19	27	12	40	1.88
1191118--1191336	89	2.5	88	86	7	327	19	28	12	39	1.88
1191918--1192015	21	4.7	21	92	0	160	35	11	15	37	1.83
1192074--1192136	19	3.7	18	76	24	73	33	12	17	36	1.88
1192093--1192117	13	1.9	13	100	0	50	36	16	16	32	1.90
1192072--1192144	32	2.3	32	97	0	137	34	12	17	35	1.88
1192161--1192202	21	2.0	21	95	0	75	45	9	16	28	1.79
1192189--1192214	13	2.0	13	100	0	52	30	15	15	38	1.88
1194580--1194698	53	2.3	53	88	5	172	31	25	11	31	1.91
1194682--1194756	27	2.7	28	89	2	107	24	34	20	21	1.96
1194825--1194978	51	3.0	51	82	5	170	27	26	11	33	1.91
1195043--1195120	27	2.8	29	84	9	101	23	34	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1195103--1195323	51	4.3	50	81	8	221	29	26	11	32	1.92
1195103--1195323	102	2.1	103	83	4	268	29	26	11	32	1.92
1196358--1196413	19	2.8	20	89	5	87	32	16	17	33	1.92
1196463--1196511	13	4.2	13	75	24	63	32	12	18	36	1.88
1196442--1196511	33	2.1	34	89	7	108	32	12	20	34	1.90
1204069--1204099	12	2.7	11	90	9	53	90	6	0	3	0.55
1207049--1207303	125	2.0	125	93	0	438	21	5	35	37	1.76
1208257--1208367	44	2.5	43	85	5	134	36	17	24	21	1.94
1208594--1208716	28	4.4	28	74	4	95	22	20	30	26	1.98
1208575--1208715	56	2.5	56	83	6	185	24	19	30	25	1.98
1208630--1208729	28	3.4	31	73	14	104	21	19	32	28	1.97
1208714--1208963	28	8.9	28	86	0	302	28	19	26	26	1.99
1208678--1208963	56	5.0	55	81	4	295	27	19	26	26	1.99
1215100--1215166	33	2.0	33	88	0	98	34	11	13	40	1.81
1215120--1215144	13	1.9	13	100	0	50	36	16	16	32	1.90
1215210--1215234	13	1.9	13	100	0	50	32	16	16	36	1.90
1215243--1215363	52	2.3	52	97	0	224	34	18	18	28	1.94
1223544--1223589	22	2.1	21	92	4	74	71	8	8	10	1.30
1224584--1224658	32	2.3	32	97	0	141	25	28	32	14	1.95
1227835--1227891	20	2.8	20	87	7	80	38	14	14	33	1.85
1229124--1229281	28	5.7	27	80	7	165	30	29	15	24	1.96
1229124--1229281	55	2.8	55	81	7	185	30	29	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231811--1232224	101	4.1	101	88	4	540	23	25	17	33	1.97
1231878--1232224	154	2.3	153	83	5	414	22	25	17	33	1.96
1232927--1232997	13	5.0	13	79	18	79	35	16	16	30	1.92
1236898--1237018	52	2.3	52	97	0	224	28	18	18	34	1.94
1236898--1237038	52	2.7	51	90	4	212	30	17	18	33	1.94
1237027--1237051	13	1.9	13	100	0	50	36	16	16	32	1.90
1237117--1237141	13	1.9	13	100	0	50	32	16	16	36	1.90
1237954--1238080	67	1.9	68	85	1	175	37	11	25	24	1.90
1238094--1238941	49	17.7	49	82	7	1019	31	18	25	25	1.98
1238084--1238946	92	9.1	93	86	7	993	31	17	25	25	1.97
1238089--1238941	141	5.9	141	86	5	1003	30	18	25	25	1.97
1238941--1239047	33	3.2	33	90	7	173	19	16	36	27	1.93
1239049--1239681	34	19.6	33	79	10	493	33	13	32	20	1.91
1239218--1239309	33	3.1	27	77	18	94	32	15	33	18	1.92
1239347--1239658	62	5.0	62	84	6	327	32	13	32	22	1.92
1239085--1239602	198	2.7	194	84	8	610	33	13	33	20	1.91
1239421--1239658	28	7.9	28	76	14	190	29	13	33	23	1.93
1240671--1240702	16	2.0	16	93	0	55	0	6	9	84	0.78
1240943--1241012	19	3.6	19	88	1	104	0	0	11	88	0.51
1240943--1241012	1	70.0	1	76	0	68	0	0	11	88	0.51
1247891--1248011	52	2.3	52	97	0	224	28	18	18	34	1.94
1247891--1248031	52	2.7	51	90	4	212	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1248020--1248044	13	1.9	13	100	0	50	36	16	16	32	1.90
1248110--1248134	13	1.9	13	100	0	50	32	16	16	36	1.90
1254831--1254879	23	2.0	23	84	7	62	79	6	12	2	0.99
1255371--1255515	33	4.4	33	92	0	220	27	30	18	23	1.98
1255515--1256269	49	15.8	49	78	10	778	24	25	18	31	1.97
1255510--1256269	92	8.0	92	91	2	998	24	26	18	31	1.97
1255653--1255720	22	3.1	22	62	19	52	23	30	14	30	1.94
1257020--1257095	32	2.4	32	89	8	111	32	13	17	36	1.88
1257135--1257159	13	1.9	13	100	0	50	32	16	16	36	1.90
1257148--1257276	52	2.5	51	85	9	172	33	19	17	29	1.95
1257175--1257296	52	2.3	52	87	5	183	38	18	16	26	1.92
1264465--1264522	16	3.6	16	79	6	55	81	8	10	0	0.89
1265340--1265377	16	2.3	17	86	4	51	44	23	5	26	1.74
1265472--1265789	31	10.1	30	77	13	286	22	30	15	31	1.95
1265765--1265810	23	2.0	23	95	0	83	28	32	21	17	1.96
1265790--1266646	100	8.5	100	95	0	1457	20	34	13	31	1.91
1266661--1266820	33	4.9	32	82	5	178	30	32	17	20	1.95
1266653--1266820	65	2.6	64	81	2	210	29	32	16	21	1.95
1266657--1266820	32	5.1	32	84	0	193	29	31	17	21	1.96
1266822--1267668	49	17.8	49	78	10	868	24	25	18	31	1.97
1266817--1267668	92	9.0	92	92	2	1157	24	25	18	31	1.97
1267344--1267407	21	3.0	22	63	28	55	25	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267379--1267766	52	7.5	50	78	7	278	23	26	17	32	1.96
1268417--1268481	19	3.8	18	75	24	77	32	12	16	38	1.86
1268419--1268494	32	2.4	32	95	0	134	32	14	17	35	1.90
1268438--1268495	13	4.0	13	74	23	53	34	15	15	34	1.89
1268534--1268558	13	1.9	13	100	0	50	32	16	16	36	1.90
1268598--1268650	20	2.7	20	96	0	97	37	15	15	32	1.88
1274005--1274035	14	2.1	15	94	5	55	12	3	0	83	0.75
1274522--1274577	18	2.9	19	84	10	62	44	1	1	51	1.22
1276470--1276569	32	3.1	32	94	0	173	35	11	17	37	1.85
1276489--1276545	13	3.9	13	72	24	51	35	12	17	35	1.87
1276468--1276564	19	5.8	18	69	27	79	34	11	16	38	1.84
1276607--1276631	13	1.9	13	100	0	50	32	16	16	36	1.90
1276640--1276768	52	2.5	52	96	0	240	34	19	18	27	1.95
1281571--1281601	12	2.6	12	94	0	53	32	25	16	25	1.96
1282781--1282822	22	1.9	22	100	0	84	28	0	0	71	0.86
1282782--1282827	22	2.0	22	91	4	74	30	0	0	69	0.89
1283545--1283591	22	2.0	24	88	8	71	48	4	0	46	1.21
1283594--1283629	18	1.9	19	88	5	56	36	5	11	47	1.63
1283618--1283651	2	17.0	2	100	0	68	50	0	0	50	1.00
1287498--1287544	20	2.3	20	82	7	60	23	14	17	44	1.85
1287525--1287715	92	2.1	92	81	8	219	37	16	9	35	1.82
1287689--1287736	21	2.3	21	100	0	96	47	18	8	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1287988--1288037	23	2.2	23	85	7	66	44	4	16	36	1.66
1288006--1288053	23	2.1	23	84	7	62	50	6	14	29	1.67
1291332--1291366	18	1.9	18	88	0	52	48	8	5	37	1.58
1294806--1294835	2	15.0	2	100	0	60	50	0	0	50	1.00
1295058--1295123	14	4.2	16	72	20	50	50	0	1	48	1.10
1303638--1303685	16	3.0	16	71	0	51	47	0	0	52	1.00
1303630--1303697	32	2.1	33	88	2	102	45	0	0	54	0.99
1303631--1303689	24	2.6	23	74	15	59	47	0	0	52	1.00
1304291--1304339	18	2.9	17	88	11	66	40	0	4	55	1.19
1307581--1307666	37	2.3	38	83	4	111	29	11	19	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14