genome.fa.s330.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Length:  1763736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336699--336749	21	2.4	21	86	0	66	15	19	1	62	1.41
338345--338428	32	2.5	33	88	9	125	33	22	14	29	1.93
338302--338428	32	3.9	31	80	17	123	33	21	12	33	1.91
339113--339156	20	2.1	21	91	8	72	38	6	6	47	1.57
345904--346018	51	2.3	51	87	3	169	28	26	11	33	1.91
345829--346100	130	2.1	130	87	1	393	27	25	12	34	1.92
345957--346255	79	3.8	78	79	1	310	27	24	12	35	1.92
346189--346305	51	2.3	51	82	5	139	29	20	12	36	1.90
345957--346254	157	1.9	158	82	0	382	27	24	12	35	1.92
346207--346335	51	2.5	51	81	5	161	30	20	8	40	1.83
356527--356552	13	2.0	13	100	0	52	30	15	15	38	1.88
357425--358030	49	12.9	49	75	13	357	31	17	25	25	1.97
357628--357973	43	7.9	39	73	15	136	28	18	26	26	1.98
357579--358022	87	5.0	86	80	9	439	29	18	26	26	1.98
357755--358025	43	5.8	48	81	9	242	30	17	26	25	1.97
357381--358034	150	4.7	134	77	12	486	30	17	26	25	1.97
358030--358258	34	6.8	34	83	4	270	34	12	34	19	1.89
358226--358279	27	2.0	27	88	0	81	29	9	33	27	1.88
358192--358313	61	2.0	61	86	0	172	33	11	31	23	1.90
358294--358603	30	10.0	31	82	6	312	31	15	29	23	1.95
358273--358603	92	3.5	91	81	6	385	32	15	29	22	1.95
358413--358592	32	5.7	33	86	4	142	33	16	27	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358357--358592	127	1.9	123	89	5	366	32	16	27	23	1.96
373383--373612	49	4.6	49	82	6	257	32	18	25	23	1.97
373383--373614	101	2.3	99	83	6	299	32	18	25	23	1.97
373633--373975	33	10.5	33	76	8	308	38	12	29	19	1.89
373857--373909	27	2.0	27	96	0	97	28	15	33	22	1.94
373877--373975	34	2.9	34	83	4	128	40	12	27	20	1.87
373690--374028	95	3.6	93	80	7	301	36	14	30	19	1.91
373947--374122	31	5.9	30	80	9	182	31	16	27	24	1.96
373911--374122	62	3.5	61	85	5	243	32	15	28	23	1.95
374099--374300	29	7.0	29	85	3	273	23	18	28	29	1.98
374099--374301	85	2.3	86	88	2	300	23	18	29	29	1.97
389683--389757	20	3.7	19	80	16	80	37	16	13	33	1.87
389674--389737	21	3.1	20	79	20	78	35	18	12	32	1.89
389674--389762	41	2.2	41	87	4	126	34	19	12	33	1.89
393372--393429	13	4.9	13	70	23	56	31	17	15	36	1.91
393352--393450	33	3.0	32	91	2	117	31	16	14	38	1.88
393384--393449	20	3.7	20	69	26	74	30	16	15	37	1.90
395090--395128	21	1.9	20	94	5	69	35	15	12	35	1.86
395249--395274	13	2.0	13	100	0	52	30	15	15	38	1.88
395313--395407	20	4.8	19	82	7	109	28	17	13	40	1.88
397887--397961	28	2.7	28	83	8	82	25	30	20	24	1.98
397811--398010	107	1.9	107	85	2	276	28	25	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397946--398063	51	2.3	51	85	5	159	31	26	11	30	1.92
397997--398216	79	2.8	78	86	4	289	27	23	15	34	1.94
397709--398169	237	1.9	237	84	5	610	28	24	14	32	1.94
399446--399511	22	3.0	22	75	8	71	80	7	7	4	1.02
400482--400994	61	8.3	61	84	3	514	27	24	17	30	1.97
400482--400920	183	2.4	182	85	1	590	27	25	16	30	1.97
400876--401045	65	2.5	66	83	6	200	24	25	16	34	1.95
401469--401542	21	3.6	19	75	10	58	43	12	14	29	1.82
404092--404417	79	4.2	77	81	5	334	28	23	13	34	1.92
404090--404417	78	4.2	75	79	9	300	28	23	13	34	1.93
411335--411401	20	3.4	19	87	4	89	29	16	17	35	1.92
411348--411401	19	2.8	20	91	2	83	29	14	18	37	1.91
411431--411488	20	2.9	20	100	0	116	32	10	20	36	1.87
411472--411510	13	3.0	13	92	0	69	30	15	20	33	1.94
411764--411803	18	2.2	19	86	4	55	30	17	10	42	1.82
413113--413137	3	8.3	3	100	0	50	32	0	36	32	1.58
417450--417518	32	2.2	32	82	10	81	21	4	21	52	1.64
420145--420197	19	2.7	20	91	2	81	24	16	18	39	1.91
420145--420213	20	3.5	19	82	7	68	27	15	17	39	1.90
421017--421260	122	2.0	122	100	0	488	28	17	17	36	1.92
423625--423688	29	2.2	29	94	0	110	29	3	17	50	1.61
426957--427012	19	2.9	19	83	2	67	35	12	17	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427332--427383	12	4.3	11	77	20	50	86	7	0	5	0.70
427330--427438	26	4.0	27	73	10	89	77	11	1	8	1.05
427327--427381	18	3.1	17	75	17	58	83	9	0	7	0.81
427339--427372	14	2.4	14	85	0	50	88	8	0	2	0.62
427327--427382	19	3.1	18	72	25	55	83	8	0	7	0.80
428750--429248	89	5.6	88	78	8	306	29	25	15	29	1.96
428750--429393	59	10.7	58	76	11	473	28	25	15	29	1.96
428825--429393	88	6.3	87	76	12	447	28	25	15	29	1.96
428750--429248	30	16.9	29	80	6	443	29	25	15	29	1.96
429210--429292	42	2.0	42	100	0	166	26	24	14	34	1.94
429252--429402	28	5.2	28	88	2	185	27	25	15	31	1.96
429122--429376	130	2.0	128	90	4	406	27	25	16	30	1.96
430166--430287	51	2.4	51	84	0	136	30	13	14	41	1.84
431299--431342	17	2.5	17	92	3	70	22	22	6	47	1.75
435794--435828	18	2.0	18	88	5	54	60	0	8	31	1.27
445793--445825	12	2.6	13	90	4	50	84	15	0	0	0.61
445805--445873	25	2.9	24	79	12	72	73	10	10	5	1.23
447049--447152	30	3.4	31	78	10	90	22	30	17	29	1.96
447080--447209	30	4.2	31	77	12	140	20	32	16	30	1.95
447080--447224	64	2.3	61	82	5	148	21	31	16	30	1.95
447205--447615	34	13.2	31	72	13	240	22	30	11	35	1.90
447220--447566	187	1.9	185	88	3	527	21	31	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447175--447563	62	6.3	61	72	13	246	22	32	12	32	1.91
447432--447568	28	4.6	28	76	9	121	21	33	12	32	1.90
447538--447615	32	2.4	34	82	4	97	20	25	10	43	1.83
447241--447576	90	3.7	90	76	7	352	22	31	11	34	1.90
454634--454707	21	3.6	20	79	3	67	31	16	12	40	1.85
457480--457541	32	1.9	33	83	9	83	53	1	1	43	1.20
457526--457571	19	2.3	20	85	10	60	63	2	0	34	1.07
457608--457647	21	2.0	20	85	5	53	55	0	0	45	0.99
463560--463727	20	7.8	20	68	18	81	42	11	16	29	1.83
463603--463778	51	3.7	50	73	18	185	42	11	17	28	1.84
463511--463807	91	3.3	91	90	2	436	42	11	17	28	1.84
464689--464714	13	2.0	13	100	0	52	30	15	15	38	1.88
464775--464847	20	3.6	20	81	3	101	31	19	13	35	1.91
464753--464847	41	2.3	42	96	1	174	29	17	12	40	1.87
465454--465499	16	2.8	16	93	6	74	30	39	2	28	1.69
467305--467343	13	3.0	13	96	0	69	35	15	17	30	1.91
467329--467407	20	3.7	20	70	20	70	45	16	12	25	1.82
469426--469463	15	2.5	15	91	0	58	13	21	15	50	1.78
473523--473548	13	2.0	13	100	0	52	30	15	15	38	1.88
473609--473681	20	3.6	20	81	3	101	31	19	13	35	1.91
473587--473681	41	2.3	42	96	1	174	29	17	12	40	1.87
474788--475575	393	2.0	394	91	1	1267	44	16	12	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479679--479703	13	1.9	13	100	0	50	32	16	16	36	1.90
480120--480213	8	10.7	9	72	18	65	75	10	1	12	1.10
480120--480204	25	3.6	25	75	16	83	74	10	1	14	1.14
480170--480247	20	3.7	19	75	18	75	76	12	3	6	1.11
480187--480264	34	2.3	34	81	16	92	74	10	6	8	1.22
480300--480337	19	2.0	20	89	5	60	81	13	2	2	0.90
481650--481700	21	2.7	18	72	16	57	39	52	7	0	1.30
481656--481695	21	1.9	21	89	0	62	37	55	7	0	1.29
485883--485918	18	2.0	18	88	0	54	33	22	8	36	1.84
488068--488092	10	2.5	10	100	0	50	92	8	0	0	0.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14