genome.fa.s330.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Length:  1763736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024889--1025459	92	6.1	92	81	8	618	23	28	15	32	1.95
1024897--1025433	282	1.9	282	94	0	950	24	27	15	32	1.95
1025336--1025666	27	10.6	33	76	11	222	22	30	13	33	1.92
1025426--1025673	61	4.1	60	75	14	238	21	31	12	33	1.91
1025398--1025627	122	1.9	121	90	0	370	22	30	13	33	1.92
1024897--1025511	282	2.2	280	88	3	772	23	28	15	31	1.95
1025548--1025673	60	2.1	62	83	3	157	21	30	11	36	1.89
1025486--1025666	95	1.9	94	85	1	245	21	30	13	34	1.92
1025653--1025747	28	3.2	29	81	13	88	34	26	17	21	1.95
1025694--1025752	31	2.0	27	87	12	82	33	23	18	23	1.97
1025781--1026586	48	17.4	48	74	16	516	25	25	18	30	1.98
1025913--1026198	39	6.9	39	74	13	248	26	27	19	26	1.99
1025864--1026282	87	4.8	87	84	7	514	26	26	18	28	1.98
1025864--1026383	174	3.0	167	83	8	531	25	25	19	29	1.98
1026164--1026586	52	8.7	48	78	10	416	24	24	18	31	1.98
1026308--1026383	39	1.9	39	97	0	143	26	25	22	26	2.00
1026131--1026585	101	4.7	93	82	11	449	24	25	19	30	1.98
1026214--1026484	140	1.9	137	87	5	391	24	24	18	31	1.98
1026132--1026537	192	2.1	187	88	2	587	24	25	19	30	1.98
1026347--1026590	49	4.9	49	78	4	254	24	24	18	31	1.98
1026347--1026682	101	3.3	100	80	4	349	24	25	19	31	1.98
1027424--1027477	19	2.7	21	82	5	76	40	12	14	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027505--1027610	20	4.8	20	69	24	79	33	16	13	37	1.87
1031662--1031693	15	2.1	15	94	0	55	31	37	0	31	1.58
1033385--1033440	19	2.9	19	86	2	76	33	17	17	30	1.94
1033425--1033451	13	2.1	13	100	0	54	40	14	14	29	1.86
1034525--1034551	13	2.1	13	100	0	54	29	14	14	40	1.86
1034506--1034570	32	2.0	33	90	3	105	29	15	13	41	1.86
1034535--1034591	19	2.9	19	86	2	78	33	15	15	35	1.90
1034634--1034665	13	2.4	14	85	15	50	37	15	12	34	1.85
1034620--1034686	33	2.0	33	91	5	109	34	13	14	37	1.86
1041370--1041425	19	2.9	19	86	2	76	33	17	17	30	1.94
1041410--1041436	13	2.1	13	100	0	54	40	14	14	29	1.86
1042510--1042536	13	2.1	13	100	0	54	29	14	14	40	1.86
1042491--1042555	32	2.0	33	90	3	105	29	15	13	41	1.86
1042520--1042576	19	2.9	19	86	2	78	33	15	15	35	1.90
1042619--1042650	13	2.4	14	85	15	50	37	15	12	34	1.85
1042605--1042671	33	2.0	33	91	5	109	34	13	14	37	1.86
1049355--1049410	19	2.9	19	86	2	76	33	17	17	30	1.94
1049395--1049421	13	2.1	13	100	0	54	40	14	14	29	1.86
1050495--1050521	13	2.1	13	100	0	54	29	14	14	40	1.86
1050476--1050540	32	2.0	33	90	3	105	29	15	13	41	1.86
1050505--1050561	19	2.9	19	86	2	78	33	15	15	35	1.90
1050604--1050635	13	2.4	14	85	15	50	37	15	12	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050590--1050656	33	2.0	33	91	5	109	34	13	14	37	1.86
1058202--1058249	22	2.2	21	88	3	69	33	2	33	31	1.70
1058236--1058274	19	2.1	18	90	4	60	38	2	23	35	1.68
1058209--1058282	22	3.6	21	83	14	100	37	1	32	28	1.66
1058834--1058889	19	2.9	19	83	2	67	35	16	12	35	1.86
1058920--1058985	20	3.7	20	73	26	83	36	15	15	33	1.88
1058919--1059018	33	3.0	33	94	2	166	35	13	16	36	1.87
1058933--1058998	13	5.5	13	76	20	72	36	15	15	33	1.88
1064176--1064207	16	2.0	16	93	0	55	18	0	3	78	0.89
1064190--1064215	11	2.4	11	100	0	52	19	0	7	73	1.07
1065156--1065215	31	1.9	31	89	0	93	25	21	36	16	1.94
1065761--1065826	31	2.1	31	86	5	89	16	25	19	37	1.93
1066431--1067313	42	21.3	42	78	7	734	37	18	30	14	1.90
1066421--1067297	84	10.6	84	82	5	872	37	18	29	14	1.90
1066421--1067313	126	7.2	126	82	4	911	37	18	30	14	1.90
1080868--1080932	32	2.0	32	82	5	78	15	20	30	33	1.93
1080988--1081064	21	3.5	21	89	5	100	10	20	33	35	1.87
1081058--1081147	31	2.9	32	86	3	121	22	18	40	18	1.92
1086137--1086266	66	2.0	65	89	1	197	23	14	22	39	1.91
1089803--1090045	97	2.5	98	81	2	276	30	13	30	26	1.94
1092199--1092379	51	3.6	51	82	3	231	42	12	14	30	1.83
1092857--1092955	33	3.1	33	77	11	91	28	17	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095340--1095458	51	2.3	51	86	0	175	30	26	12	31	1.93
1095393--1095695	79	3.9	78	76	4	286	28	26	13	32	1.93
1098099--1098328	116	2.0	116	87	0	334	34	15	20	29	1.93
1106059--1106174	52	2.2	52	83	6	137	39	7	27	25	1.83
1106111--1106317	78	2.6	78	81	6	222	36	7	26	29	1.83
1106146--1106330	79	2.4	77	84	6	221	35	5	27	31	1.79
1107970--1107994	13	1.9	13	100	0	50	32	16	16	36	1.90
1107983--1108122	52	2.7	50	84	6	181	35	17	16	30	1.93
1112244--1112287	20	2.1	21	83	4	54	31	13	9	45	1.75
1116235--1116287	20	2.7	20	88	5	72	32	13	16	37	1.88
1120751--1120854	52	2.0	52	100	0	208	32	15	25	26	1.95
1123863--1124375	92	5.6	92	80	5	526	30	26	12	30	1.93
1123863--1124375	180	2.8	183	82	4	592	30	26	12	30	1.93
1123871--1124375	272	1.8	273	83	3	658	29	25	13	31	1.93
1124932--1125324	44	8.9	44	78	4	299	18	21	16	44	1.87
1124937--1125324	132	2.9	132	79	2	422	18	20	16	44	1.87
1125343--1125397	28	2.0	28	86	13	78	23	21	21	32	1.98
1125385--1125510	43	2.9	42	81	4	126	18	24	15	42	1.88
1126212--1126617	167	2.5	166	80	6	416	32	12	7	48	1.68
1126574--1126616	21	2.0	21	82	8	52	20	6	2	69	1.23
1127234--1127282	10	4.7	10	80	9	62	83	0	16	0	0.64
1127234--1127282	13	3.5	14	81	15	57	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128292--1128335	4	12.2	4	95	4	53	72	0	0	27	0.85
1128290--1128332	23	2.0	22	86	9	61	74	0	0	25	0.82
1129223--1129276	20	2.6	21	88	2	74	38	11	16	33	1.84
1129313--1129449	52	2.7	50	86	3	177	29	12	13	44	1.80
1131821--1131893	27	2.7	27	87	8	112	26	30	17	26	1.98
1142570--1142703	20	6.7	20	80	6	155	30	17	13	38	1.88
1142570--1142680	40	2.8	40	95	0	195	31	15	14	38	1.87
1142570--1142703	40	3.3	40	90	2	189	30	17	13	38	1.88
1156517--1156550	11	3.1	11	91	8	52	91	8	0	0	0.43
1156527--1156558	16	1.9	17	93	6	57	87	9	3	0	0.64
1157712--1157793	14	6.2	13	72	17	62	32	13	17	36	1.88
1157807--1158301	28	17.2	28	77	5	373	28	30	17	24	1.97
1157806--1158300	56	8.6	56	76	8	413	28	30	17	24	1.97
1158273--1158335	32	1.9	33	84	9	85	26	26	19	26	1.99
1159453--1159598	20	6.8	20	71	19	98	30	17	12	39	1.87
1159399--1159575	70	2.5	70	91	0	282	29	17	12	40	1.86
1159453--1159643	90	2.1	92	86	5	273	30	17	12	40	1.86
1167523--1167549	11	2.5	11	100	0	54	85	7	0	7	0.75
1169359--1169397	14	2.9	13	81	7	51	30	10	15	43	1.80
1169410--1169843	28	15.5	28	76	5	360	27	30	19	22	1.98
1169600--1169803	111	1.8	112	86	3	295	26	33	17	22	1.96
1176151--1176220	27	2.6	27	88	6	97	24	34	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1176173--1176347	79	2.2	79	84	4	219	26	25	15	32	1.96
1176329--1176449	51	2.4	51	90	2	181	29	27	12	30	1.93
1176385--1176532	79	1.9	76	83	4	188	26	28	15	29	1.96
1176507--1176584	27	2.8	28	88	1	104	23	35	20	20	1.96
1176433--1176635	103	1.9	104	86	3	282	25	29	17	28	1.97
1176567--1176787	51	4.3	51	82	4	237	29	25	11	33	1.91
1176775--1176850	28	2.7	27	86	8	91	25	32	14	27	1.94
1188927--1188967	10	3.9	10	81	12	55	85	9	2	2	0.78
1190046--1190329	54	5.0	54	82	8	327	26	27	21	24	1.99
1190071--1190614	116	4.9	113	74	15	467	25	28	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14