genome.fa.s330.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Length:  1763736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32885--33035	42	3.5	41	87	8	187	19	25	16	37	1.93
32852--33123	44	6.4	42	77	14	247	18	27	15	38	1.91
33619--33843	61	3.7	61	84	3	301	22	25	20	30	1.98
33839--34093	43	5.8	43	76	13	216	18	27	12	40	1.88
33857--34093	89	2.7	85	84	7	264	20	26	13	39	1.90
31755--35680	972	4.1	971	91	1	6243	25	24	16	32	1.96
34591--34815	61	3.7	60	84	2	288	24	25	21	28	1.99
34591--34815	122	1.9	121	88	2	344	24	25	21	28	1.99
34790--35065	43	6.4	43	77	14	243	19	27	15	37	1.92
34790--35065	89	3.2	88	79	10	288	19	27	15	37	1.92
35083--35169	40	2.2	40	81	8	97	18	27	11	42	1.85
35561--35677	61	1.9	61	87	3	173	25	25	17	31	1.97
37071--37164	30	3.5	28	70	27	87	39	10	20	29	1.86
37100--37184	20	3.8	20	69	26	62	42	9	17	30	1.81
37071--37194	50	2.5	50	95	0	221	40	9	20	29	1.84
37117--37198	20	3.3	24	70	26	73	42	8	19	29	1.81
38257--38765	28	17.9	28	84	4	610	24	17	26	31	1.97
38775--38847	26	2.8	26	76	15	78	34	16	12	36	1.86
53656--53697	19	2.2	19	95	0	75	30	28	16	23	1.96
53678--54522	404	2.1	404	85	3	1121	38	14	16	30	1.89
54159--55576	476	3.0	471	81	4	1620	36	13	17	31	1.89
58794--58868	20	3.8	20	80	0	96	33	13	12	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69612--69688	20	3.8	20	85	0	100	45	12	9	32	1.74
69615--69759	40	3.8	40	70	18	139	43	14	11	30	1.81
69632--69770	71	2.0	71	92	0	233	44	14	12	28	1.81
69586--69759	91	1.9	92	85	1	242	44	14	12	28	1.82
69703--69759	20	2.8	20	81	0	69	43	15	10	29	1.80
71796--71870	32	2.3	32	88	0	105	32	16	16	36	1.90
72152--72223	22	3.3	22	94	3	119	38	8	4	48	1.53
72351--72375	13	1.9	13	100	0	50	36	16	16	32	1.90
72441--72493	13	4.5	13	73	26	64	32	13	16	37	1.88
72429--72493	33	2.0	33	90	6	105	32	13	18	35	1.90
76352--76605	119	2.1	119	98	0	492	31	15	17	35	1.91
78943--78981	20	1.9	21	94	5	71	30	15	2	51	1.57
81317--81370	20	2.8	19	83	5	72	29	12	20	37	1.90
86236--86260	2	12.5	2	100	0	50	48	0	0	52	1.00
86387--86464	40	2.0	40	94	0	138	21	28	25	24	1.99
86659--86704	11	3.9	12	76	23	53	45	4	0	50	1.21
86658--86705	24	2.0	24	92	8	80	45	4	0	50	1.21
88440--88488	20	2.4	21	86	3	64	40	12	14	32	1.83
88530--88662	52	2.6	52	87	0	185	27	15	13	43	1.84
91139--91180	15	2.6	16	85	14	59	76	16	7	0	1.00
92584--93275	63	11.4	61	71	11	275	28	29	13	29	1.94
92584--93439	89	9.5	88	74	8	507	27	29	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92571--93439	29	29.0	29	75	7	479	27	29	12	29	1.93
93508--93678	33	5.3	33	73	11	120	33	25	13	27	1.93
93443--93720	64	4.3	64	79	5	220	32	25	13	27	1.94
93476--93750	32	8.5	32	72	5	171	33	26	14	26	1.94
93759--93998	59	4.1	59	83	6	301	27	28	12	31	1.93
93783--93998	60	3.7	59	80	11	264	27	28	12	31	1.93
93759--93998	119	2.0	119	86	6	337	27	28	12	31	1.93
93961--94369	52	7.8	52	79	3	396	25	24	14	35	1.93
95064--95180	53	2.2	53	85	8	150	32	11	11	43	1.78
98917--99154	81	3.0	78	76	7	237	34	13	23	28	1.93
101538--101563	13	2.0	13	100	0	52	38	15	15	30	1.88
101616--101667	21	2.6	21	90	6	81	32	15	13	38	1.86
102391--102493	42	2.5	41	83	3	116	48	12	23	15	1.79
102498--102785	60	4.8	61	87	3	379	26	20	26	25	1.99
102680--102969	154	1.9	151	87	7	420	25	20	28	25	1.99
102620--103025	214	1.9	214	86	4	577	26	19	27	26	1.99
102833--103534	171	4.1	172	87	5	896	24	20	28	26	1.99
102833--103533	55	12.3	55	83	6	746	24	20	28	26	1.99
105775--105973	79	2.5	78	80	4	213	30	16	28	24	1.96
105932--106004	27	2.7	27	80	2	83	21	19	34	24	1.96
105991--106121	51	2.5	52	80	8	149	32	10	25	31	1.90
108470--108495	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108449--108515	33	2.0	33	88	0	98	43	16	14	25	1.86
108625--108682	21	2.8	21	100	0	116	37	20	10	31	1.86
109405--110576	55	20.3	59	86	7	1378	23	21	29	26	1.99
109405--110576	177	6.8	174	86	7	1470	23	21	29	26	1.99
123896--124132	79	3.0	79	83	5	291	33	14	25	26	1.94
126630--126679	21	2.5	21	90	6	77	34	16	12	38	1.85
128594--128620	13	2.1	13	100	0	54	40	14	14	29	1.86
128664--128716	19	2.7	19	83	13	72	33	18	13	33	1.90
133024--133090	33	2.0	33	85	5	91	32	14	14	37	1.88
140167--140196	3	10.0	3	92	0	51	33	36	0	30	1.58
141801--141831	13	2.4	13	94	0	53	35	12	16	35	1.87
141781--141847	33	2.0	33	88	5	100	32	16	14	35	1.90
141877--141903	13	2.1	13	100	0	54	40	14	14	29	1.86
147296--147349	20	2.7	20	88	0	72	33	16	12	37	1.87
153395--153440	22	2.1	22	88	11	69	36	2	6	54	1.39
154466--154518	22	2.4	22	90	0	88	16	20	20	41	1.90
154811--154877	27	2.4	28	75	9	66	13	22	2	61	1.46
155333--155401	33	2.2	31	82	10	77	33	0	1	65	1.02
157935--158057	1	123.0	1	77	0	93	0	7	6	86	0.72
157948--158043	16	5.8	17	77	15	112	0	8	6	85	0.74
157934--158051	33	3.7	32	91	6	186	0	7	6	85	0.74
166959--166998	18	2.2	18	90	0	62	52	12	2	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168739--168773	18	1.9	18	94	0	61	42	14	0	42	1.45
168742--168781	18	2.2	18	86	0	53	50	15	0	35	1.44
169726--169784	17	3.4	17	71	17	50	40	3	3	52	1.35
170501--170580	29	2.9	25	73	21	70	56	1	1	41	1.15
170538--170586	23	2.2	21	85	7	62	57	0	2	40	1.10
170929--170981	11	4.8	11	76	6	54	35	0	0	64	0.94
170929--170991	21	2.9	21	88	9	90	39	0	0	60	0.97
176305--176483	92	1.9	92	95	0	322	26	12	27	32	1.93
186271--186347	28	2.7	28	80	9	84	44	6	18	31	1.75
186294--186450	85	1.8	85	82	5	201	43	10	15	30	1.80
186946--186994	25	2.0	25	100	0	98	40	0	30	28	1.57
188688--188833	72	2.0	72	97	0	274	34	20	18	26	1.95
194025--194153	52	2.5	52	93	0	222	28	17	17	36	1.93
194162--194186	13	1.9	13	100	0	50	36	16	16	32	1.90
194229--194281	20	2.7	20	91	2	90	39	16	11	32	1.85
195069--195215	58	2.5	58	94	0	258	30	18	29	21	1.97
195284--196821	43	33.1	43	77	14	1332	31	18	25	24	1.98
195182--195805	96	6.5	96	85	7	770	30	18	26	23	1.98
195717--196821	92	12.1	92	93	1	1776	31	18	25	25	1.98
196507--196572	22	3.0	22	64	27	59	31	21	22	24	1.98
196504--196567	21	3.0	21	64	28	53	31	18	23	26	1.98
196826--196986	32	5.0	32	87	4	193	19	18	33	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196826--196978	65	2.4	65	90	3	229	17	18	33	30	1.95
196989--197481	100	5.0	97	77	12	406	32	13	32	20	1.92
196993--197340	133	2.6	135	89	5	541	32	13	33	19	1.91
197052--197475	33	13.0	30	72	15	195	31	13	33	20	1.92
197356--197481	30	4.0	31	80	13	125	31	15	29	23	1.95
197579--197616	16	2.3	17	86	4	51	26	5	23	44	1.74
205719--205743	13	1.9	13	100	0	50	36	16	16	32	1.90
205786--205883	19	5.8	18	71	28	90	36	17	12	33	1.87
205781--205881	32	3.1	32	97	1	184	35	17	11	34	1.87
205805--205861	13	3.9	13	76	24	60	33	17	14	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14