genome.fa.s330.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold330
Parameters: 2 7 7 80 10 50 1000
Length:  1763736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883290--884033	33	23.4	33	75	13	571	35	12	31	20	1.90
883315--883879	34	17.9	28	73	17	170	35	12	31	20	1.89
883290--883973	128	5.4	127	79	9	669	35	12	31	19	1.90
883297--883907	163	3.8	162	75	13	502	36	12	31	19	1.89
883290--883941	94	6.9	94	79	9	621	35	12	31	19	1.89
883828--883880	27	2.0	27	100	0	106	26	15	35	22	1.93
883911--884482	31	18.3	31	83	5	620	31	15	29	23	1.95
883914--884482	122	4.6	122	84	5	646	31	15	29	23	1.95
883895--884482	61	9.4	61	84	6	583	31	14	29	23	1.95
885773--885812	19	2.2	18	86	4	53	2	2	10	85	0.80
898947--899004	13	4.6	12	81	12	64	79	17	3	0	0.87
898945--899005	26	2.3	26	86	10	81	78	18	3	0	0.88
898956--899005	17	3.0	17	77	11	59	80	16	4	0	0.87
899922--899946	13	1.9	13	100	0	50	44	16	24	16	1.86
900205--900243	14	2.9	13	85	7	51	33	12	15	38	1.85
900252--900814	28	20.0	28	79	8	495	30	26	18	24	1.98
900398--900487	47	1.9	47	93	0	153	34	22	17	25	1.96
906382--906406	13	1.9	13	100	0	50	36	16	16	32	1.90
910167--910191	13	1.9	13	100	0	50	36	16	16	32	1.90
911184--911224	21	2.0	21	90	4	66	19	12	17	51	1.76
913482--913753	54	5.0	54	89	0	319	31	25	14	29	1.95
913487--913822	162	2.1	162	81	1	386	32	26	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920224--920483	129	2.0	129	96	0	484	34	13	18	33	1.90
920519--920593	20	3.8	19	78	7	87	41	12	13	33	1.81
920516--920593	40	2.0	39	89	2	120	41	12	12	33	1.82
921153--922164	29	34.4	29	84	7	1181	22	17	31	28	1.97
921152--922164	57	17.2	57	82	7	1079	22	17	31	28	1.97
923314--923357	1	44.0	1	81	0	52	0	2	6	90	0.51
923303--923358	19	2.8	19	86	10	69	1	3	8	85	0.78
937373--937443	20	3.5	20	76	0	61	40	14	12	32	1.83
938328--938366	19	1.9	19	85	10	51	15	12	5	66	1.41
939378--939402	13	1.9	13	100	0	50	36	16	16	32	1.90
939358--939423	32	2.0	33	94	2	116	34	12	16	36	1.86
939497--939677	52	3.5	52	97	0	335	35	17	17	29	1.93
946858--946910	11	4.5	11	75	15	52	84	3	11	0	0.73
946841--946917	12	6.4	11	76	18	64	83	5	10	1	0.86
947848--948128	32	9.1	30	80	10	253	22	29	15	32	1.95
948008--948060	27	2.0	27	88	0	79	24	32	15	28	1.95
947926--948162	122	1.9	124	87	5	347	22	30	14	32	1.93
947985--948456	34	14.7	33	74	15	298	21	33	12	32	1.91
948228--948422	65	3.0	65	89	3	268	21	33	12	31	1.91
947979--948451	165	2.9	162	84	8	524	21	33	12	31	1.92
948458--948596	64	2.2	64	90	5	226	28	33	17	20	1.95
948463--948594	32	4.0	32	87	6	194	28	33	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948640--949053	43	9.1	43	79	12	425	25	25	17	31	1.97
948589--949053	92	5.1	92	93	2	774	25	25	17	31	1.97
949979--950003	13	1.9	13	100	0	50	36	16	16	32	1.90
949959--950024	32	2.0	33	94	2	116	34	12	16	36	1.86
950065--950089	13	1.9	13	100	0	50	32	16	16	36	1.90
954633--954659	14	1.9	14	100	0	54	55	0	0	44	0.99
955012--955045	5	6.8	5	93	0	59	41	2	0	55	1.15
955514--955565	17	3.1	17	83	5	70	57	3	1	36	1.28
955520--955565	16	2.8	16	86	3	65	58	2	2	36	1.22
957426--957461	3	12.0	3	93	0	63	33	2	0	63	1.08
957810--957871	21	2.8	22	83	9	74	69	4	3	22	1.22
959218--959257	3	13.3	3	100	0	80	0	32	0	67	0.91
961330--961362	2	16.5	2	100	0	66	0	0	48	51	1.00
962026--962087	31	2.0	31	96	0	115	29	8	22	40	1.82
964782--964928	58	2.6	54	72	16	147	59	2	2	36	1.21
966164--966243	33	2.4	33	100	0	160	35	17	15	32	1.91
966164--966227	13	5.4	13	75	21	68	34	15	15	34	1.90
966177--966242	20	3.7	20	73	26	83	33	18	15	33	1.92
966298--966352	13	3.8	13	75	25	56	38	10	16	34	1.84
966298--966370	32	2.2	33	92	2	121	38	13	17	30	1.89
966883--966929	16	2.9	16	72	12	51	46	10	10	31	1.73
966947--966990	16	2.8	16	75	0	52	54	2	6	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969240--969322	12	6.5	13	70	22	50	56	0	0	43	0.99
969240--969371	18	6.9	19	68	17	69	59	0	0	40	0.97
969326--969377	21	2.5	20	81	9	61	65	0	0	34	0.93
969248--969403	27	5.6	28	74	17	121	57	0	0	42	0.99
970074--970109	15	2.3	16	90	4	56	61	8	5	25	1.46
970073--970110	16	2.4	17	82	13	53	63	7	5	23	1.42
972579--972605	14	1.9	14	100	0	54	44	7	0	48	1.31
975797--975863	33	2.0	33	88	0	98	34	11	13	40	1.81
975817--975841	13	1.9	13	100	0	50	36	16	16	32	1.90
975906--975930	13	1.9	13	100	0	50	32	16	16	36	1.90
975939--976059	52	2.3	52	97	0	224	34	18	18	28	1.94
980330--980360	10	3.1	10	100	0	62	19	29	9	41	1.83
980392--980428	17	2.2	17	90	0	56	29	24	5	40	1.77
980409--980458	24	2.1	24	88	0	73	26	24	8	42	1.82
980456--980492	13	2.8	13	87	0	56	32	21	13	32	1.92
985076--985114	16	2.4	17	91	8	71	35	10	25	28	1.89
986111--986147	17	2.2	17	90	0	56	29	24	5	40	1.77
986128--986177	24	2.1	24	88	0	73	26	24	8	42	1.82
986175--986212	13	2.9	13	88	0	58	31	21	15	31	1.94
987014--987067	20	2.7	20	94	0	90	37	20	12	29	1.90
987096--987151	19	2.9	19	83	2	67	37	16	14	32	1.88
987136--987162	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987120--987181	32	1.9	32	90	3	97	41	14	14	29	1.85
995922--995981	19	3.0	21	85	9	90	36	16	13	33	1.88
995962--995988	13	2.1	13	100	0	54	40	14	14	29	1.86
995943--996007	32	2.0	33	90	3	105	40	13	16	29	1.88
998234--998258	13	1.9	13	100	0	50	36	16	16	32	1.90
999149--999207	29	2.1	28	83	3	73	37	16	5	40	1.71
999826--999873	23	2.1	23	100	0	96	29	8	8	54	1.60
1000363--1000456	48	1.9	50	86	4	138	14	15	9	59	1.60
1000824--1000868	3	15.7	3	81	9	58	33	0	2	64	1.06
1001427--1001572	43	3.4	42	75	12	118	42	16	26	15	1.87
1001675--1002142	42	11.2	42	75	8	165	42	17	24	15	1.88
1001719--1002159	84	5.3	85	75	11	326	42	18	24	15	1.88
1001740--1002168	42	10.3	42	74	11	280	43	17	23	15	1.87
1001699--1002142	126	3.5	124	74	9	357	42	18	23	15	1.88
1002242--1002797	88	6.3	87	84	3	569	40	14	23	21	1.90
1002239--1002481	44	5.5	43	68	11	127	40	16	22	20	1.91
1002293--1002794	44	11.4	44	65	9	182	39	13	24	22	1.90
1002807--1003045	48	5.0	48	74	7	173	41	18	21	18	1.91
1003073--1003237	48	3.4	47	77	5	152	40	15	22	21	1.91
1003462--1003630	89	1.9	90	82	6	218	25	14	30	29	1.95
1005066--1005108	21	2.0	21	82	8	52	2	13	2	81	0.89
1006141--1006199	20	2.8	20	79	5	64	38	15	11	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009335--1009397	28	2.2	28	100	0	126	30	15	25	28	1.96
1011157--1011198	13	3.2	13	93	0	75	28	16	16	38	1.91
1013713--1013739	13	2.1	13	100	0	54	29	14	14	40	1.86
1013713--1013890	33	5.5	33	71	22	128	29	15	20	34	1.94
1013790--1013853	20	3.5	20	68	27	70	29	15	21	32	1.95
1013805--1013890	13	7.5	13	67	28	61	32	13	18	34	1.90
1018443--1018507	33	2.0	33	82	11	80	32	18	16	32	1.94
1020832--1020881	21	2.4	21	83	9	59	48	0	20	32	1.50
1020839--1020881	21	2.0	22	86	4	61	51	0	20	27	1.48
1024892--1025423	31	17.1	30	82	8	543	23	28	15	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14