genome.fa.s36.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Length:  4808052

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  17  of  28  ( 3342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2600853--2600914	32	1.9	32	93	0	106	33	0	11	54	1.36
2600847--2600949	16	6.4	16	73	10	68	34	1	10	52	1.47
2600856--2600965	32	3.4	32	79	7	89	34	1	11	51	1.49
2600891--2600969	16	4.9	16	74	10	63	32	2	12	51	1.53
2600923--2600994	32	2.2	32	80	0	81	26	1	18	54	1.52
2603299--2603342	8	5.6	8	78	5	54	13	2	0	84	0.73
2603557--2603604	8	6.2	8	77	18	57	37	0	0	62	0.95
2604027--2604071	20	2.3	19	81	11	54	31	0	4	64	1.13
2605489--2605528	20	2.0	20	85	9	55	57	0	0	42	0.98
2607966--2607990	2	12.5	2	100	0	50	48	0	0	52	1.00
2608374--2608429	18	2.9	20	76	10	62	42	0	0	57	0.99
2611806--2611851	2	23.0	2	100	0	92	50	0	0	50	1.00
2613586--2613646	3	20.3	3	89	0	95	62	4	0	32	1.17
2614110--2614183	28	2.7	27	82	12	89	37	6	2	52	1.42
2614950--2614982	13	2.5	13	85	14	50	54	12	0	33	1.37
2616012--2616051	20	2.1	20	86	9	57	42	0	0	57	0.98
2616034--2616096	20	2.8	23	79	13	69	49	0	0	50	1.00
2618762--2618841	38	2.1	37	81	9	90	31	2	2	63	1.20
2618798--2618844	12	4.0	11	81	15	51	27	2	0	70	0.99
2619280--2619565	154	1.9	153	87	2	367	40	7	5	46	1.56
2622052--2622085	17	2.1	15	89	10	50	29	5	2	61	1.34
2624201--2624238	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2625880--2625919	20	2.0	20	90	0	62	52	0	2	45	1.14
2626169--2626194	8	3.2	8	100	0	52	42	11	0	46	1.40
2627796--2627917	20	5.7	21	71	19	83	58	1	0	40	1.08
2627798--2627855	18	3.3	18	76	21	52	63	0	0	36	0.94
2630201--2630247	24	1.9	25	91	4	78	46	0	2	51	1.13
2632310--2632359	23	2.2	23	85	7	66	52	0	0	48	1.00
2632310--2632401	37	2.5	37	76	11	93	48	0	0	51	1.00
2632332--2632360	13	2.1	14	93	6	51	48	0	0	51	1.00
2634624--2634659	2	18.0	2	100	0	72	50	0	0	50	1.00
2636539--2636577	2	19.5	2	100	0	78	51	0	0	48	1.00
2637396--2637422	6	4.5	6	100	0	54	70	0	0	29	0.88
2639678--2639750	30	2.4	30	78	15	78	43	2	0	53	1.15
2639620--2639771	14	10.9	14	69	16	59	41	3	0	54	1.21
2639935--2639984	2	25.0	2	91	0	73	46	2	4	48	1.32
2645129--2645162	18	1.9	17	88	5	50	47	2	0	50	1.16
2645799--2645847	11	4.5	11	82	7	55	38	0	0	61	0.96
2645821--2645887	17	3.7	17	73	16	55	37	2	0	59	1.13
2645836--2645892	20	2.8	20	81	5	62	38	3	0	57	1.16
2645806--2645894	36	2.6	36	79	13	89	39	2	0	58	1.11
2646209--2646267	22	2.8	22	80	17	63	57	1	0	40	1.09
2647560--2647588	2	14.5	2	100	0	58	48	0	0	51	1.00
2647868--2647904	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648113--2648139	2	13.5	2	100	0	54	51	0	0	48	1.00
2648139--2648166	2	14.0	2	100	0	56	50	50	0	0	1.00
2649242--2649275	14	2.4	14	90	0	50	52	8	0	38	1.33
2649253--2649284	2	16.0	2	93	0	55	50	3	0	46	1.17
2649607--2649632	2	13.0	2	100	0	52	50	50	0	0	1.00
2650157--2650208	2	26.0	2	100	0	104	50	50	0	0	1.00
2650794--2650846	20	2.6	20	77	20	56	49	0	3	47	1.19
2650901--2650937	16	2.3	16	85	0	56	56	5	5	32	1.45
2656409--2656461	20	2.6	21	80	14	67	62	0	1	35	1.06
2656418--2656481	30	2.1	30	86	11	87	70	0	1	28	0.97
2657041--2657102	28	2.1	30	82	11	76	59	3	1	35	1.23
2657569--2657619	26	2.0	26	84	7	68	41	0	3	54	1.19
2657877--2657931	17	3.4	17	70	25	55	54	0	1	43	1.10
2658341--2658386	23	2.0	23	86	0	65	50	0	0	50	1.00
2658984--2659013	13	2.3	13	94	0	51	63	0	0	36	0.95
2660655--2660768	34	3.4	32	75	14	99	44	19	3	32	1.67
2660643--2660768	68	1.9	67	86	5	182	44	22	3	30	1.68
2665015--2665092	13	5.9	13	70	24	56	35	0	3	60	1.15
2666294--2666345	22	2.3	23	74	9	63	55	0	0	44	0.99
2666335--2666380	13	3.4	13	85	14	58	54	0	0	45	0.99
2666326--2666381	14	3.9	15	78	17	57	55	0	0	44	0.99
2667443--2667487	22	2.1	21	87	4	63	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2669003--2669083	22	4.5	19	73	26	61	46	0	0	53	1.00
2669027--2669074	16	3.0	16	75	19	55	50	0	0	50	1.00
2669030--2669083	18	3.2	18	67	20	53	50	0	0	50	1.00
2669414--2669483	20	3.5	20	71	11	63	51	0	0	48	1.00
2669413--2669479	19	3.4	20	81	8	75	53	0	0	46	1.00
2670337--2670427	29	3.1	29	71	14	89	54	0	0	45	0.99
2670372--2670418	14	3.3	14	80	14	60	48	0	0	51	1.00
2670344--2670459	57	2.1	56	80	8	128	51	3	0	44	1.18
2670558--2670610	24	2.5	19	80	20	52	43	0	1	54	1.11
2673256--2673290	2	17.5	2	93	0	61	48	0	2	48	1.16
2674245--2674288	23	2.0	22	83	12	56	54	0	0	45	0.99
2674503--2674600	48	2.0	48	96	0	178	38	6	12	42	1.67
2674626--2674689	30	2.2	30	83	8	78	45	0	14	40	1.44
2675538--2675582	23	2.1	22	84	12	58	75	2	20	2	1.01
2675533--2675586	24	2.2	24	77	9	65	75	1	20	1	0.98
2676685--2676710	2	13.0	2	100	0	52	50	0	0	50	1.00
2676925--2676949	2	12.5	2	100	0	50	0	0	48	52	1.00
2677205--2677244	2	20.0	2	94	0	71	50	2	0	47	1.14
2679292--2679338	16	2.9	17	75	18	55	42	0	0	57	0.98
2679220--2679361	77	1.9	76	80	7	171	36	2	4	57	1.30
2680865--2680908	18	2.6	17	82	7	54	50	0	0	50	1.00
2684007--2684036	14	2.2	13	94	5	51	43	13	20	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2684237--2684306	35	2.0	35	83	5	88	57	0	0	42	0.99
2686170--2686217	14	3.3	14	80	8	60	33	0	4	62	1.14
2686172--2686255	13	6.0	13	71	16	53	33	0	4	61	1.17
2689745--2689794	22	2.3	21	79	3	55	56	2	0	42	1.11
2689800--2689870	27	2.8	25	74	16	65	47	0	1	50	1.09
2694210--2694243	17	2.0	17	88	0	50	44	8	0	47	1.34
2694560--2694681	26	4.6	25	68	14	75	62	3	0	33	1.17
2695032--2695073	21	2.0	21	86	9	59	54	0	2	42	1.13
2695040--2695115	40	2.0	38	82	12	95	55	0	1	43	1.08
2695053--2695101	15	3.4	14	78	10	55	55	0	0	44	0.99
2695057--2695115	14	4.4	14	76	18	54	57	0	0	42	0.98
2695067--2695139	18	4.1	18	73	22	64	53	0	0	46	1.00
2695418--2695491	19	4.1	18	87	6	62	36	5	0	58	1.21
2695438--2695493	19	2.9	19	97	0	103	42	5	0	51	1.24
2695436--2695511	10	7.8	10	73	14	61	42	3	0	53	1.19
2695438--2695511	19	3.8	19	90	1	76	43	4	0	52	1.20
2695733--2695764	16	1.9	17	93	6	57	25	3	0	71	1.00
2696637--2696662	12	2.2	12	100	0	52	76	0	0	23	0.78
2696653--2696707	16	3.4	17	80	7	69	54	0	0	45	0.99
2699851--2699897	25	1.9	24	83	12	60	31	2	0	65	1.04
2699964--2699995	2	16.0	2	100	0	64	50	0	0	50	1.00
2703317--2703372	24	2.3	24	79	11	62	35	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2703365--2703397	14	2.3	15	90	10	52	45	0	3	51	1.16
2704600--2704656	29	2.0	29	82	6	71	33	5	3	57	1.38
2704566--2704679	37	3.1	37	74	12	85	35	4	1	57	1.29
2705301--2705370	32	2.2	33	87	7	99	60	0	2	37	1.12
2706149--2706200	25	2.1	24	82	3	59	38	0	1	59	1.08
2706446--2706484	2	19.5	2	89	0	60	43	0	5	51	1.24
2707455--2707498	15	3.0	15	83	12	56	43	0	0	56	0.99
2707682--2707754	31	2.4	31	86	4	103	54	2	0	42	1.14
2708547--2708573	2	13.5	2	100	0	54	48	0	0	51	1.00
2710327--2710425	41	2.4	41	94	3	171	53	9	6	31	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28