genome.fa.s36.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Length:  4808052

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  8  of  28  ( 3342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1266033--1266081	18	2.8	18	76	14	57	48	0	0	51	1.00
1266594--1266651	21	2.8	22	76	19	63	74	5	0	20	1.01
1267295--1267327	16	2.1	16	88	5	50	57	3	21	18	1.53
1267571--1267608	10	3.5	11	85	10	51	31	0	5	63	1.17
1267604--1267667	26	2.5	25	78	12	76	21	4	0	73	1.01
1277715--1277742	2	14.0	2	100	0	56	50	0	0	50	1.00
1285655--1285696	15	2.9	14	89	10	66	78	0	16	4	0.91
1285657--1285695	20	2.0	20	89	0	60	76	0	17	5	0.96
1285689--1285728	19	2.3	16	87	12	53	60	0	40	0	0.97
1286497--1286546	3	16.7	3	95	0	91	68	2	0	30	1.01
1286720--1286744	2	12.5	2	100	0	50	52	0	0	48	1.00
1287016--1287075	20	3.0	20	79	18	63	55	1	0	43	1.10
1290023--1290097	26	2.9	25	79	15	82	40	1	2	56	1.22
1290210--1290243	17	2.0	17	88	11	52	35	2	11	50	1.54
1290356--1290380	9	2.8	9	100	0	50	80	0	0	20	0.72
1290709--1290745	16	2.4	15	90	4	56	45	0	0	54	1.00
1292220--1292252	3	11.0	3	100	0	66	66	0	0	33	0.92
1295753--1296043	97	3.0	97	98	0	573	27	18	18	35	1.94
1297557--1297612	22	2.3	23	79	14	69	46	0	1	51	1.11
1297570--1297619	21	2.4	20	87	12	66	50	0	0	50	1.00
1298409--1298467	28	2.1	27	84	12	75	59	0	0	40	0.97
1298403--1298482	32	2.6	28	74	22	72	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299111--1299150	19	2.2	18	86	4	53	27	5	12	55	1.58
1299373--1299410	18	2.1	18	95	0	67	34	18	15	31	1.92
1301101--1301214	19	5.8	19	72	15	61	62	1	3	32	1.22
1301051--1301348	9	33.2	9	66	22	107	64	2	2	30	1.19
1301101--1301298	82	2.5	80	77	10	192	65	2	2	29	1.19
1301100--1301305	63	3.4	59	76	16	158	65	2	2	30	1.19
1301164--1301216	19	2.8	18	91	8	88	60	1	0	37	1.08
1301303--1301350	25	2.0	24	84	12	62	60	4	0	35	1.16
1301351--1301408	29	2.0	30	83	10	75	31	1	0	67	1.01
1301369--1301417	10	4.9	10	80	7	55	32	0	0	67	0.91
1301428--1301537	9	12.0	9	66	24	61	28	0	6	65	1.17
1301453--1301503	19	2.4	22	78	21	63	25	0	9	64	1.24
1301513--1301596	33	2.6	32	81	10	91	27	3	3	65	1.26
1301898--1301945	25	1.9	25	82	0	60	37	22	8	31	1.84
1302099--1302131	17	1.9	17	88	11	50	12	6	3	78	1.04
1306544--1306671	60	2.1	60	80	0	148	24	20	27	28	1.99
1306663--1306847	53	3.5	54	86	3	252	31	15	28	24	1.95
1306714--1306850	27	5.1	27	63	9	84	32	14	27	25	1.95
1306726--1306807	26	3.1	26	64	10	67	29	15	29	25	1.96
1307650--1307937	150	1.9	150	89	1	452	26	21	24	28	1.99
1312293--1312421	52	2.5	52	92	0	222	28	17	17	36	1.93
1312430--1312454	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1312507--1312571	19	3.7	19	75	23	79	40	15	10	33	1.82
1312500--1312569	32	2.2	32	94	0	122	38	15	11	34	1.84
1317098--1317133	18	2.0	18	88	0	54	27	2	2	66	1.19
1317707--1317740	16	2.1	16	100	0	68	44	0	17	38	1.49
1320764--1320827	33	1.9	33	90	0	101	40	1	6	51	1.36
1321347--1321423	31	2.4	32	82	6	95	32	5	0	62	1.17
1321767--1321826	25	2.4	25	80	11	68	48	0	0	51	1.00
1321784--1321822	20	1.9	21	89	5	62	51	0	0	48	1.00
1321897--1321949	13	4.1	14	76	11	51	60	1	0	37	1.08
1321943--1321981	18	2.2	18	85	0	51	43	2	2	51	1.29
1324627--1324667	17	2.4	18	92	8	68	51	0	9	39	1.35
1325419--1325523	36	2.7	39	75	8	108	52	4	1	40	1.33
1325480--1325600	38	3.2	37	78	13	149	52	2	2	42	1.28
1325418--1325611	73	2.6	73	83	10	225	52	3	3	41	1.33
1325408--1325614	38	5.5	37	65	23	110	53	2	2	41	1.31
1325809--1325870	18	3.6	18	70	24	60	35	0	11	53	1.37
1325810--1325883	18	4.2	17	67	10	51	40	0	8	51	1.32
1326012--1326037	13	2.0	13	100	0	52	46	0	0	53	1.00
1326001--1326039	16	2.4	16	82	0	51	38	0	0	61	0.96
1330207--1330454	127	2.0	127	98	0	478	34	15	12	37	1.86
1331665--1331720	17	3.2	17	82	7	58	48	1	5	44	1.36
1331684--1331719	18	1.9	18	88	5	54	50	0	5	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331705--1331782	26	3.2	26	62	20	67	48	2	10	38	1.51
1331703--1331799	48	2.0	48	100	0	194	50	4	10	35	1.56
1335878--1335932	16	3.5	16	80	5	67	34	7	7	50	1.58
1335864--1335929	31	2.1	31	85	0	87	28	6	6	59	1.46
1337251--1337336	32	2.8	31	82	10	88	41	0	2	55	1.12
1337266--1337333	16	4.1	17	69	16	54	47	0	2	50	1.16
1337818--1338199	192	2.0	192	96	2	714	37	17	18	25	1.93
1338984--1339075	47	2.0	47	88	0	139	25	13	34	27	1.92
1339879--1340173	150	2.0	150	88	0	437	26	21	23	27	1.99
1345666--1345702	19	1.9	19	88	0	56	27	2	2	67	1.17
1347938--1347993	20	2.8	20	97	0	103	32	14	14	39	1.86
1350265--1350444	51	3.5	51	82	8	222	28	23	11	35	1.90
1350438--1350527	28	3.2	28	81	4	85	26	27	17	27	1.98
1350331--1350692	186	1.9	187	83	3	471	28	27	14	30	1.95
1350520--1350633	51	2.2	51	80	4	131	31	26	12	29	1.92
1350650--1350822	79	2.2	79	81	4	188	27	26	13	32	1.94
1354255--1354331	31	2.4	32	82	6	95	32	5	0	62	1.17
1354675--1354734	25	2.4	25	80	11	68	48	0	0	51	1.00
1354692--1354730	20	1.9	21	89	5	62	51	0	0	48	1.00
1354805--1354857	13	4.1	14	76	11	51	60	1	0	37	1.08
1354851--1354889	18	2.2	18	85	0	51	43	2	2	51	1.29
1357537--1357577	17	2.4	18	92	8	68	51	0	9	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358316--1358509	36	5.1	40	66	17	117	53	2	2	41	1.28
1358329--1358511	38	4.9	37	72	15	153	51	2	2	42	1.30
1358329--1358522	73	2.6	74	84	8	227	52	2	3	41	1.30
1358319--1358525	38	5.5	37	66	21	117	53	2	2	41	1.29
1358721--1358782	18	3.6	18	70	24	60	35	0	11	53	1.37
1358722--1358795	18	4.2	17	67	10	51	40	0	8	51	1.32
1358927--1358952	13	2.0	13	100	0	52	46	0	0	53	1.00
1363119--1363366	127	2.0	127	97	0	469	34	14	12	37	1.85
1364575--1364630	17	3.2	17	82	7	58	48	1	5	44	1.36
1364594--1364629	18	1.9	18	88	5	54	50	0	5	44	1.25
1364615--1364692	26	3.2	26	62	20	67	48	2	10	38	1.51
1364613--1364709	48	2.0	48	100	0	194	50	4	10	35	1.56
1368790--1368844	16	3.5	16	80	5	67	34	7	7	50	1.58
1368776--1368841	31	2.1	31	85	0	87	28	6	6	59	1.46
1370169--1370254	32	2.8	31	82	10	88	41	0	2	55	1.12
1370184--1370251	16	4.1	17	69	16	54	47	0	2	50	1.16
1370743--1371124	192	2.0	192	98	0	746	37	17	18	25	1.93
1376187--1376232	24	2.0	23	91	4	74	54	8	13	23	1.66
1381587--1381624	16	2.4	16	100	0	76	42	10	10	36	1.74
1384392--1384443	21	2.4	21	75	15	52	50	3	1	44	1.31
1385640--1385727	32	2.8	32	83	0	113	29	17	20	32	1.95
1390245--1390323	7	10.9	7	75	12	61	18	7	0	73	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1390245--1390323	15	5.4	14	72	13	61	18	7	0	73	1.06
1390404--1390448	20	2.2	20	84	8	54	28	0	8	62	1.25
1392920--1392962	21	2.2	20	87	8	61	55	2	0	41	1.12
1399271--1399313	17	2.5	17	81	11	52	11	2	4	81	0.93
1400647--1400677	3	10.3	3	100	0	62	32	0	0	67	0.91
1401894--1402253	195	1.9	193	83	3	472	46	5	6	41	1.52
1403112--1403142	16	1.9	16	93	0	53	58	3	0	38	1.15
1403876--1403917	20	2.1	20	90	0	66	50	0	2	47	1.14
1403977--1404032	9	6.3	9	77	10	53	42	3	0	53	1.18
1403978--1404029	18	3.1	17	83	8	70	40	3	0	55	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28