genome.fa.s36.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Length:  4808052

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  19  of  28  ( 3342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2845151--2845219	20	3.5	20	76	11	72	49	0	0	50	1.00
2845153--2845290	33	4.3	32	68	18	92	49	0	0	50	1.00
2845196--2845257	12	5.4	12	70	14	51	51	0	0	48	1.00
2845802--2845868	21	3.2	20	82	14	75	47	0	0	52	1.00
2845854--2845912	18	3.2	18	75	17	59	50	0	0	49	1.00
2845859--2845914	19	2.9	19	79	10	62	51	0	0	48	1.00
2845896--2845951	28	2.0	27	86	10	78	51	0	0	48	1.00
2846179--2846216	12	3.2	12	88	7	51	31	0	0	68	0.90
2846224--2846274	22	2.2	24	86	10	70	33	0	1	64	1.05
2846787--2846867	27	2.9	26	79	17	74	43	0	1	55	1.07
2846814--2846864	17	3.0	18	83	11	63	45	0	0	54	0.99
2846814--2846882	32	2.1	34	83	5	88	46	1	0	52	1.09
2846904--2846958	21	2.7	21	75	13	53	40	1	1	56	1.21
2847051--2847090	21	1.9	21	89	0	62	55	0	0	45	0.99
2848181--2848220	7	5.9	7	82	5	55	50	0	0	50	1.00
2848180--2848220	13	3.1	13	89	3	64	48	0	0	51	1.00
2849087--2849137	23	2.2	24	85	3	68	54	0	0	45	0.99
2849850--2849892	22	2.0	22	86	9	61	60	0	0	39	0.97
2851417--2851460	21	2.0	22	82	4	54	40	0	2	56	1.11
2851451--2851498	15	3.1	15	78	3	51	64	0	0	35	0.94
2851452--2851506	20	2.6	22	80	16	71	60	0	0	40	0.97
2851463--2851506	22	1.9	24	90	9	74	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2851930--2852086	2	85.0	2	72	17	117	47	2	3	47	1.32
2851937--2852083	25	5.5	26	73	13	102	46	2	3	46	1.33
2851934--2852085	27	5.6	27	69	16	91	46	2	3	47	1.32
2851996--2852098	27	3.9	27	78	13	76	55	2	2	38	1.30
2852236--2852279	22	2.0	22	95	0	79	27	15	22	34	1.95
2852415--2852464	25	2.0	25	84	0	64	36	0	0	64	0.94
2852399--2852471	10	6.9	10	79	18	69	32	0	0	67	0.91
2857879--2857944	27	2.4	27	82	2	69	50	18	4	27	1.66
2857980--2858026	23	2.0	23	100	0	94	46	25	8	19	1.77
2859005--2859138	22	6.0	22	67	20	66	57	0	0	41	1.04
2859093--2859133	16	2.5	16	88	4	55	63	0	0	36	0.95
2859075--2859142	27	2.5	28	86	11	97	61	0	0	38	0.96
2859015--2859149	27	5.1	27	72	16	95	57	0	0	42	0.98
2859051--2859152	31	3.5	31	74	18	101	55	0	0	44	0.99
2859347--2859414	20	3.5	19	71	9	57	36	0	2	60	1.12
2859808--2859864	26	2.1	26	84	12	71	45	0	5	49	1.24
2862760--2862794	15	2.2	16	90	5	54	45	0	8	45	1.34
2862823--2862874	26	2.0	26	82	14	63	46	1	3	48	1.31
2866891--2866937	21	2.2	21	88	0	67	48	2	0	48	1.13
2869769--2869828	28	2.1	28	100	0	120	40	0	20	40	1.52
2874424--2874477	20	2.8	18	75	21	56	46	0	3	50	1.19
2878530--2878585	2	28.0	2	100	0	112	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2884587--2884633	18	2.5	19	80	16	53	44	0	0	55	0.99
2887324--2887393	34	2.1	34	89	5	106	27	15	25	31	1.96
2888141--2888178	19	1.9	19	89	5	58	47	0	0	52	1.00
2889408--2889460	19	2.9	19	78	18	58	45	0	0	54	0.99
2889429--2889476	17	2.8	16	77	22	53	41	0	0	58	0.98
2889390--2889514	16	7.5	17	69	22	63	37	0	0	60	1.08
2889951--2890001	19	2.7	20	78	9	61	41	0	0	58	0.98
2889963--2890015	17	3.0	19	78	10	51	49	0	0	50	1.00
2890016--2890078	14	4.4	14	78	9	56	47	3	1	47	1.27
2889992--2890078	29	3.0	29	69	15	72	50	2	1	45	1.21
2905561--2905642	43	1.9	42	83	14	105	56	1	0	42	1.07
2905563--2905641	22	3.7	20	71	15	68	56	1	0	41	1.07
2905651--2905708	21	2.6	22	78	13	66	51	18	1	27	1.56
2907369--2907658	103	2.7	104	81	6	325	28	14	17	39	1.89
2908532--2908608	24	3.0	24	70	21	57	44	0	1	54	1.08
2910850--2910914	24	2.7	24	80	0	76	36	0	50	12	1.40
2910880--2910919	12	3.3	12	89	0	53	37	0	52	10	1.35
2916722--2917045	134	2.4	134	82	2	384	29	29	8	32	1.87
2921044--2921109	22	2.7	24	76	21	66	51	0	0	48	1.00
2925654--2925691	15	2.4	16	86	4	51	18	7	0	73	1.06
2926500--2926528	13	2.1	14	93	6	51	17	0	0	82	0.66
2926923--2926970	19	2.5	20	76	10	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926937--2927016	24	3.2	26	74	12	69	45	0	0	55	0.99
2927489--2927537	19	2.6	19	80	0	62	40	0	2	57	1.10
2929905--2929934	15	1.9	16	93	6	53	43	10	0	46	1.37
2931797--2931896	34	3.0	32	80	11	80	43	0	2	55	1.11
2932915--2932971	25	2.3	23	78	18	62	36	0	0	63	0.95
2932984--2933028	19	2.4	19	85	10	58	40	0	0	60	0.97
2932945--2933019	8	9.4	8	68	21	50	38	0	1	60	1.06
2933597--2933659	10	6.3	10	74	18	51	60	0	1	38	1.07
2933642--2933683	15	2.7	15	96	3	75	57	0	0	42	0.99
2933604--2933688	15	5.6	14	77	15	64	58	0	1	40	1.05
2933595--2933696	33	3.2	33	78	9	104	60	0	0	38	1.03
2933964--2933991	2	14.0	2	100	0	56	50	0	0	50	1.00
2934188--2934220	2	16.5	2	93	0	57	51	0	3	45	1.16
2937311--2937349	20	1.9	21	89	5	62	43	0	0	56	0.99
2937338--2937380	21	2.0	21	91	8	70	44	0	0	55	0.99
2937356--2937413	29	2.1	27	84	12	73	53	0	0	46	1.00
2937329--2937439	51	2.2	50	80	13	113	51	0	0	48	1.00
2937405--2937430	5	5.2	5	100	0	52	57	0	0	42	0.98
2942336--2942360	13	1.9	13	100	0	50	76	0	24	0	0.80
2943161--2943230	18	3.9	17	73	12	52	54	0	0	45	0.99
2945532--2945570	2	19.5	2	100	0	78	51	0	48	0	1.00
2947033--2947059	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2952742--2952775	18	2.0	16	88	11	50	0	44	0	55	0.99
2956153--2956178	2	13.0	2	100	0	52	50	0	0	50	1.00
2958863--2958912	17	2.8	18	81	6	57	78	8	10	4	1.09
2959170--2959240	33	2.1	34	82	5	83	45	0	1	53	1.09
2961049--2961077	3	9.7	3	100	0	58	31	0	0	68	0.89
2961275--2961309	18	1.9	18	88	0	52	14	22	28	34	1.93
2964015--2964049	2	17.5	2	100	0	70	48	0	0	51	1.00
2966154--2966185	12	2.7	12	95	0	55	40	9	0	50	1.35
2966771--2966821	14	3.6	14	81	5	66	60	0	3	35	1.15
2967083--2967144	28	2.2	27	81	13	72	58	0	0	41	0.98
2967100--2967158	30	2.1	30	84	15	81	52	0	3	44	1.17
2967208--2967251	3	14.7	3	100	0	88	31	0	0	68	0.90
2967940--2967969	15	1.9	16	93	6	53	83	0	16	0	0.65
2968778--2968853	25	3.0	25	80	14	75	51	0	0	48	1.00
2968812--2968863	12	4.2	13	78	9	54	51	0	0	48	1.00
2969033--2969104	17	4.3	16	71	7	54	50	1	0	48	1.09
2969078--2969210	30	4.6	29	74	7	119	55	1	1	41	1.18
2969192--2969225	17	2.1	16	88	5	50	52	2	0	44	1.16
2969078--2969213	59	2.3	60	80	12	158	55	1	1	41	1.18
2979911--2979951	20	2.0	20	85	4	55	51	0	0	48	1.00
2979914--2979957	21	2.1	22	91	8	74	47	0	0	52	1.00
2980473--2980497	4	6.2	4	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2982284--2982312	6	4.8	6	100	0	58	0	34	17	48	1.47
2982832--2982870	2	20.0	2	94	5	71	51	0	0	48	1.00
2983135--2983177	17	2.5	17	80	3	50	60	0	11	27	1.31
2983626--2983659	18	1.9	18	88	5	52	70	0	0	29	0.87
2985936--2985991	21	2.7	23	73	15	59	50	0	1	48	1.11
2986572--2986601	15	2.0	15	93	0	51	56	0	0	43	0.99
2990905--2990933	3	9.7	3	100	0	58	68	0	0	31	0.89
2991425--2991500	35	2.2	35	83	9	93	52	1	0	46	1.08
2992038--2992068	16	1.9	16	93	0	53	22	0	0	77	0.77
2996566--2996617	14	3.8	14	70	14	54	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28