genome.fa.s36.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Length:  4808052

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  28  of  28  ( 3342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4645104--4645131	2	14.0	2	100	0	56	50	0	0	50	1.00
4646090--4646355	48	5.5	48	89	0	379	20	24	20	35	1.96
4646086--4646319	24	9.8	24	65	10	111	20	23	20	36	1.95
4652955--4653030	32	2.4	31	81	16	77	48	3	0	47	1.20
4654404--4654457	25	2.1	26	86	10	76	46	1	0	51	1.11
4654452--4654493	18	2.4	17	88	11	59	69	0	2	28	1.01
4656234--4656308	28	2.7	28	91	2	116	45	4	1	49	1.29
4656227--4656319	28	3.3	27	81	16	109	45	4	1	49	1.29
4656397--4656441	23	2.0	23	82	4	56	51	2	0	46	1.13
4657007--4657041	5	7.0	5	93	0	61	37	0	62	0	0.95
4657101--4657127	6	4.5	6	100	0	54	14	18	48	18	1.82
4662113--4662165	2	27.0	2	78	17	58	49	0	5	45	1.26
4664658--4664687	3	10.0	3	100	0	60	66	0	0	33	0.92
4665317--4665356	6	6.1	7	85	11	50	27	17	55	0	1.43
4666976--4667010	2	17.5	2	93	0	61	48	0	2	48	1.16
4669831--4669856	11	2.4	11	100	0	52	38	19	7	34	1.80
4679069--4679097	2	14.5	2	100	0	58	51	0	0	48	1.00
4679471--4679505	2	17.5	2	87	0	52	45	0	5	48	1.26
4681507--4681603	17	5.9	16	69	12	63	53	1	2	43	1.19
4681747--4681798	16	3.3	15	73	10	50	80	5	0	13	0.88
4681748--4681800	22	2.6	21	80	13	58	79	5	0	15	0.91
4681869--4681920	18	2.9	18	75	13	54	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4682982--4683022	7	6.0	7	91	5	57	29	48	0	21	1.50
4687102--4687139	17	2.1	19	85	9	53	63	0	0	36	0.95
4687890--4687923	3	11.3	3	100	0	68	67	0	32	0	0.91
4693858--4693888	12	2.6	12	100	0	62	16	29	16	38	1.90
4693968--4694158	99	1.9	97	92	4	321	27	8	16	47	1.76
4701206--4701232	3	9.0	3	100	0	54	66	0	0	33	0.92
4701231--4701267	3	12.3	3	94	0	65	35	2	0	62	1.10
4705640--4705664	6	4.2	6	100	0	50	48	0	20	32	1.50
4714875--4714902	3	9.3	3	100	0	56	67	0	0	32	0.91
4715736--4715779	6	7.0	6	92	2	61	47	22	0	29	1.51
4716463--4716497	16	2.2	16	90	10	54	40	0	0	60	0.97
4718560--4718591	2	16.0	2	100	0	64	50	0	0	50	1.00
4722269--4722304	2	18.0	2	88	0	54	44	0	5	50	1.25
4722552--4722644	16	5.9	15	82	9	89	40	0	2	56	1.11
4722593--4722635	22	2.0	22	86	9	61	37	0	2	60	1.10
4722637--4722671	16	2.2	16	100	0	70	25	0	11	62	1.28
4722539--4722644	32	3.3	32	78	10	110	40	0	3	55	1.18
4722557--4722649	48	2.0	47	87	6	134	39	0	1	59	1.05
4722579--4722680	48	2.1	48	78	7	109	36	0	4	57	1.27
4723481--4723538	16	3.6	16	79	11	64	34	1	8	55	1.41
4724129--4724159	5	6.2	5	92	0	53	0	22	0	77	0.77
4733027--4733070	3	14.7	3	90	0	70	0	27	34	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4733518--4733563	23	2.0	23	86	0	65	63	0	2	34	1.07
4733577--4733624	12	4.1	12	78	5	53	54	0	4	41	1.20
4733946--4733985	19	2.2	18	87	12	64	62	5	5	27	1.37
4733960--4734082	6	20.5	6	68	22	55	58	1	0	39	1.14
4733948--4733989	18	2.3	19	95	4	77	61	4	4	28	1.36
4734034--4734081	11	4.5	11	77	15	55	62	0	0	37	0.95
4733995--4734085	19	4.7	20	70	18	59	58	0	0	41	0.98
4734535--4734589	20	2.5	23	80	16	64	54	0	0	45	0.99
4739325--4739361	3	12.3	3	100	0	74	32	0	0	67	0.91
4739434--4739476	21	2.0	21	82	8	52	39	0	2	58	1.11
4739779--4739803	13	1.9	13	100	0	50	48	0	0	52	1.00
4740118--4740217	16	6.1	16	73	9	85	60	0	0	40	0.97
4740119--4740214	2	51.0	2	72	12	60	59	0	0	40	0.97
4740224--4740290	27	2.4	27	80	11	75	56	0	0	43	0.99
4741595--4741627	12	2.8	12	95	0	57	54	3	12	30	1.52
4743908--4743983	26	3.1	24	78	14	75	40	0	1	57	1.07
4744475--4744512	2	19.0	2	100	0	76	50	0	0	50	1.00
4748688--4748722	3	12.0	3	93	6	63	68	0	0	31	0.90
4749822--4749849	9	3.1	9	100	0	56	53	10	0	35	1.36
4753430--4753460	4	7.8	4	100	0	62	48	0	0	51	1.00
4756828--4756963	70	1.9	70	90	0	218	34	24	8	33	1.85
4761105--4761162	25	2.3	24	82	8	71	20	1	5	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4761188--4761236	25	1.9	26	87	4	73	28	2	0	69	1.00
4763115--4763168	20	2.7	20	91	5	83	31	12	18	37	1.89
4769461--4769513	20	2.6	19	85	8	61	30	20	0	49	1.50
4771024--4771162	44	3.1	44	92	2	224	37	2	26	33	1.71
4771815--4771951	20	6.8	19	69	17	82	32	16	16	34	1.92
4771898--4771951	20	2.7	20	91	5	83	31	12	18	37	1.89
4776375--4776399	7	3.6	7	100	0	50	48	36	0	16	1.46
4778862--4778901	2	20.0	2	94	0	71	47	0	0	52	1.00
4783983--4784142	16	10.0	16	81	5	130	37	26	18	17	1.93
4783989--4784141	32	4.8	32	77	8	150	37	26	18	17	1.93
4783969--4784142	48	3.6	46	77	12	147	37	26	17	18	1.93
4785233--4785291	16	3.7	16	77	8	57	55	15	3	25	1.55
4785200--4785284	32	2.6	32	77	14	77	55	17	5	21	1.63
4791191--4791228	2	19.0	2	100	0	76	50	0	0	50	1.00
4791566--4791612	22	2.1	22	84	7	60	65	0	17	17	1.27
4792658--4792691	16	2.1	16	94	0	59	38	8	20	32	1.84
4792669--4792762	32	2.9	32	76	9	93	40	8	15	35	1.78
4793434--4793459	2	13.0	2	100	0	52	50	0	0	50	1.00
4793593--4793665	26	2.8	26	89	2	112	47	10	2	38	1.53
4794088--4794447	178	2.0	178	92	0	603	34	17	12	35	1.87
4799326--4799352	2	13.5	2	100	0	54	51	0	0	48	1.00
4801948--4807729	22	258.7	23	73	22	1551	5	15	40	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4801845--4807740	7	802.3	7	74	20	4254	5	15	40	38	1.69
4801009--4807740	14	459.6	14	75	19	4387	4	13	42	39	1.65
4802254--4807470	76	68.7	75	70	22	609	5	15	40	38	1.69
4802652--4807637	52	96.5	53	72	21	503	5	15	40	38	1.69
4800464--4807740	7	981.2	8	72	20	1617	4	12	43	39	1.63
4805248--4805319	6	11.3	6	80	17	67	2	13	38	44	1.59
4807827--4807934	7	14.4	7	73	21	78	4	79	2	12	0.99
4807827--4807934	18	5.9	18	74	16	71	4	79	2	12	0.99
4807843--4807936	15	5.9	16	75	16	81	6	78	3	11	1.05
4807827--4807934	53	2.0	53	85	7	148	4	79	2	12	0.99
4807968--4808045	6	12.5	6	77	8	75	3	80	2	12	0.95
4807951--4808045	13	6.8	13	80	19	95	5	78	3	12	1.03
4807999--4808052	13	4.2	12	84	11	54	0	81	5	12	0.85
4807952--4808045	20	4.4	20	77	15	91	5	78	3	12	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28

The End!