genome.fa.s36.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold36
Parameters: 2 7 7 80 10 50 1000
Length:  4808052

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   

This is table  23  of  28  ( 3342 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3486143--3486235	19	5.1	18	65	23	52	56	3	0	39	1.15
3493017--3493066	24	2.1	23	79	17	57	44	4	12	40	1.60
3502236--3502266	3	10.3	3	92	0	53	64	0	3	32	1.09
3502421--3502512	33	2.8	31	76	9	78	45	2	0	52	1.13
3502506--3502558	20	2.6	20	78	3	61	56	0	0	43	0.99
3503519--3503572	27	2.1	26	83	10	67	57	0	1	40	1.09
3505819--3505859	17	2.5	16	88	11	57	29	2	2	65	1.18
3506699--3506756	15	3.9	15	71	10	57	48	0	0	51	1.00
3506692--3506750	24	2.5	24	83	8	75	52	0	0	47	1.00
3506711--3506755	20	2.2	20	84	7	56	48	0	0	51	1.00
3506692--3506761	29	2.4	29	83	6	90	52	0	0	47	1.00
3507922--3507955	12	2.8	12	90	0	59	73	0	26	0	0.83
3510688--3510734	13	3.6	13	80	5	51	36	0	0	63	0.94
3510686--3510743	30	1.9	30	82	0	71	41	0	0	58	0.98
3510798--3510832	17	2.2	16	90	10	54	42	0	0	57	0.99
3515778--3515805	2	14.0	2	100	0	56	50	0	0	50	1.00
3516035--3516102	20	3.8	18	76	17	54	42	0	0	57	0.98
3516028--3516102	28	2.8	26	75	18	73	42	0	0	57	0.98
3523170--3523220	17	3.0	17	82	5	68	47	0	1	50	1.12
3527865--3528312	227	2.0	226	95	0	806	27	17	15	39	1.90
3532119--3532154	18	2.1	18	89	5	56	47	2	0	50	1.15
3539132--3539160	14	2.0	15	93	6	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3545425--3545463	3	13.0	3	100	0	78	66	0	0	33	0.92
3545643--3545704	20	3.0	22	71	20	60	54	0	0	45	0.99
3545852--3545883	16	2.1	16	94	5	57	53	0	0	46	1.00
3546148--3546186	17	2.4	17	86	4	53	53	0	0	46	1.00
3546827--3546853	2	13.5	2	100	0	54	48	0	0	51	1.00
3556499--3556531	3	11.3	3	93	6	59	30	0	0	69	0.88
3557741--3557784	16	2.8	15	79	6	52	54	0	0	45	0.99
3557758--3557850	5	18.4	5	68	16	50	58	1	2	38	1.17
3557763--3557848	25	3.7	23	69	26	65	58	1	2	38	1.19
3565624--3565656	2	16.5	2	93	0	57	45	3	0	51	1.16
3571638--3571668	2	15.5	2	100	0	62	48	0	0	51	1.00
3572156--3572198	19	2.3	19	84	8	52	27	2	2	67	1.15
3572262--3572319	21	2.8	22	84	7	68	43	0	0	56	0.99
3572274--3572319	20	2.2	22	84	7	60	43	0	0	56	0.99
3572527--3572557	16	1.9	16	93	0	53	54	0	0	45	0.99
3573473--3573507	17	1.9	19	88	11	56	60	0	0	40	0.97
3574710--3574739	3	10.0	3	92	0	51	63	0	3	33	1.11
3574987--3575020	11	3.1	11	86	0	50	47	0	0	52	1.00
3575415--3575480	6	10.8	6	73	20	57	60	1	0	37	1.06
3575436--3575480	11	4.1	11	91	0	72	64	0	0	35	0.94
3575384--3575458	35	2.1	34	80	9	80	57	2	0	40	1.13
3578000--3578050	24	2.1	24	85	0	66	35	1	1	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3578058--3578087	16	1.9	16	93	6	53	70	0	0	30	0.88
3578368--3578407	21	2.0	21	90	5	64	82	0	5	12	0.82
3584789--3584830	2	21.0	2	100	0	84	50	0	0	50	1.00
3586374--3586434	25	2.6	24	79	18	67	42	0	4	52	1.23
3591237--3591279	7	6.1	7	84	10	61	39	0	0	60	0.97
3591198--3591278	28	3.0	28	79	20	93	39	0	1	59	1.05
3591196--3591283	21	4.5	19	75	14	81	39	0	1	59	1.05
3591267--3591306	21	2.0	20	85	14	55	52	2	0	45	1.14
3591245--3591326	22	3.8	23	78	13	61	46	2	0	51	1.14
3591458--3591516	30	2.0	30	83	6	75	52	0	1	45	1.10
3591508--3591557	23	2.1	24	78	14	59	58	4	0	38	1.17
3591991--3592024	13	2.7	13	95	4	61	50	0	0	50	1.00
3592103--3592138	11	3.4	11	88	7	56	50	0	0	50	1.00
3593745--3593781	2	18.5	2	100	0	74	51	0	0	48	1.00
3593969--3593993	10	2.5	10	100	0	50	48	0	0	52	1.00
3594425--3594480	17	3.2	17	80	7	51	32	0	1	66	1.03
3595450--3595487	16	2.4	16	91	4	60	36	0	2	60	1.11
3595477--3595517	21	2.0	22	90	9	68	53	0	0	46	1.00
3595543--3595593	17	3.2	15	75	22	50	54	1	0	43	1.11
3598648--3598686	16	2.5	15	87	8	51	84	0	0	15	0.62
3598736--3598800	34	1.9	32	82	14	78	58	1	3	36	1.23
3599060--3599168	38	2.9	38	84	2	130	34	28	7	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3599071--3599214	76	1.9	76	81	5	175	34	26	9	29	1.88
3609022--3609066	22	2.0	22	87	8	65	37	0	0	62	0.96
3610188--3610219	2	16.5	2	93	6	57	50	0	0	50	1.00
3611927--3611961	7	4.9	7	93	6	61	57	0	0	42	0.99
3612349--3612397	12	4.2	12	78	5	55	0	14	4	81	0.83
3612349--3612397	5	8.3	6	80	17	50	0	14	4	81	0.83
3612356--3612397	18	2.4	18	96	4	77	0	16	4	78	0.91
3618217--3618243	14	1.9	14	100	0	54	48	0	0	51	1.00
3618575--3618613	15	2.5	15	87	8	51	48	0	0	51	1.00
3618572--3618615	23	1.9	23	90	0	70	50	0	0	50	1.00
3618771--3618828	29	2.0	28	90	3	89	41	0	0	58	0.98
3618902--3618941	21	1.9	21	85	10	55	57	0	0	42	0.98
3619566--3619617	23	2.3	22	86	3	68	44	5	1	48	1.38
3624038--3624079	18	2.2	20	79	12	52	45	0	4	50	1.23
3624373--3624403	2	15.5	2	100	0	62	48	0	51	0	1.00
3624690--3624721	2	16.0	2	100	0	64	0	50	0	50	1.00
3624721--3624748	2	14.0	2	100	0	56	50	0	0	50	1.00
3625363--3625388	13	2.0	13	100	0	52	53	0	0	46	1.00
3627542--3627582	17	2.5	16	84	7	55	48	0	2	48	1.14
3627930--3627992	2	33.0	2	83	15	80	47	1	1	49	1.20
3628167--3628209	22	1.9	24	86	13	65	32	0	0	67	0.91
3630561--3630597	12	3.0	12	92	4	56	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3631556--3631600	3	15.0	3	100	0	90	33	0	0	66	0.92
3632876--3632919	21	2.1	21	87	4	63	47	2	0	50	1.13
3635150--3635178	2	14.5	2	100	0	58	51	0	0	48	1.00
3638983--3639038	23	2.4	23	88	5	78	35	0	1	62	1.06
3639979--3640046	20	3.2	22	76	21	74	51	1	0	47	1.09
3640149--3640188	3	13.0	3	89	5	62	32	0	2	65	1.06
3640859--3641064	104	2.0	103	81	0	241	28	7	16	48	1.73
3643623--3643657	17	1.9	19	88	11	56	2	11	5	80	1.00
3648464--3648492	2	14.5	2	100	0	58	48	0	0	51	1.00
3649637--3650350	228	3.1	228	82	1	786	29	25	23	20	1.99
3649637--3650535	228	3.9	226	80	3	744	30	24	23	21	1.99
3651397--3651467	12	5.9	12	71	19	51	42	1	2	53	1.24
3651468--3651522	17	3.2	16	84	7	65	49	0	0	50	1.00
3651473--3651527	21	2.8	21	78	15	64	45	0	0	54	0.99
3651475--3651527	17	3.1	17	86	5	72	45	0	0	54	0.99
3652593--3652631	3	13.0	3	94	0	69	35	0	30	33	1.58
3653790--3653834	23	2.0	23	83	8	58	40	2	2	55	1.24
3654332--3654379	22	2.3	20	89	10	71	54	0	0	45	0.99
3654326--3654379	20	2.7	21	83	13	69	51	0	0	48	1.00
3654311--3654378	35	2.0	33	83	11	84	52	0	0	47	1.00
3654684--3654736	26	2.0	28	92	7	92	37	0	0	62	0.96
3654853--3654896	22	2.0	22	90	0	70	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3654874--3654928	25	2.2	26	83	3	67	61	0	1	36	1.06
3655105--3655188	18	5.0	16	73	24	59	42	3	0	53	1.18
3655128--3655210	18	4.7	18	79	10	66	39	1	0	59	1.05
3655190--3655241	23	2.3	23	80	6	61	34	0	0	65	0.93
3655731--3655771	14	3.0	14	76	16	50	48	0	0	51	1.00
3656357--3656391	17	2.1	17	88	0	52	34	0	5	60	1.21
3656972--3657021	25	2.0	24	84	3	64	64	2	0	34	1.05
3658204--3658244	18	2.2	19	83	12	50	34	0	0	65	0.93
3661841--3661887	24	2.0	24	83	8	60	53	0	0	46	1.00
3662159--3662210	26	2.0	26	85	7	70	38	0	1	59	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28