genome.fa.s44.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Length:  3265628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  15  of  17  ( 1994 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2863289--2863456	35	4.9	35	79	5	168	34	11	22	31	1.90
2864414--2864467	19	2.7	20	91	5	83	37	18	14	29	1.91
2864437--2864501	33	2.0	32	84	3	85	38	15	15	30	1.88
2871293--2871349	24	2.4	24	93	0	96	8	28	8	54	1.61
2873165--2873195	13	2.4	13	94	0	53	35	12	16	35	1.87
2873145--2873211	33	2.0	33	88	11	102	32	17	13	35	1.89
2873242--2873296	19	2.8	19	86	5	74	36	14	16	32	1.89
2878117--2878167	13	3.8	13	82	17	52	82	5	7	3	0.94
2878117--2878168	23	2.4	21	81	9	59	82	5	7	3	0.93
2881993--2882138	20	6.8	20	77	17	150	33	16	10	39	1.84
2885639--2885712	19	3.7	19	82	8	78	29	16	17	36	1.92
2885742--2885794	20	2.7	20	85	5	72	37	13	18	30	1.89
2893432--2893457	13	2.0	13	100	0	52	30	15	15	38	1.88
2896646--2897030	199	2.0	191	86	8	535	51	12	10	24	1.71
2899382--2899475	17	5.2	17	72	22	59	42	0	2	55	1.12
2899403--2899473	16	4.1	16	76	10	61	43	0	2	53	1.15
2899637--2899667	16	1.9	16	93	0	53	25	0	0	74	0.82
2899624--2899670	11	4.3	11	81	8	51	27	0	0	72	0.85
2899624--2899667	5	8.2	5	87	7	52	27	0	0	72	0.85
2900392--2900425	18	2.0	16	88	11	50	55	2	0	41	1.15
2900392--2900430	16	2.4	17	87	8	55	51	5	0	43	1.24
2900852--2900878	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2901565--2901596	14	2.1	16	88	11	50	25	0	3	71	1.00
2902638--2902836	75	2.6	74	80	5	211	28	16	15	39	1.89
2904985--2905449	165	2.8	161	80	9	503	29	12	10	47	1.73
2906002--2906043	13	3.3	12	83	9	57	83	0	16	0	0.65
2905999--2906044	16	2.9	17	81	15	62	82	0	17	0	0.67
2906007--2906036	14	2.1	15	93	6	53	83	0	16	0	0.65
2906000--2906044	17	2.8	17	80	19	60	82	0	17	0	0.68
2906003--2906044	15	2.7	16	85	7	59	83	0	16	0	0.65
2906095--2906131	12	3.2	12	92	3	58	2	18	8	70	1.25
2908841--2908878	20	1.9	20	100	0	76	28	18	10	42	1.83
2924062--2924673	28	22.1	27	79	6	437	27	28	18	24	1.98
2924071--2924706	56	11.5	56	82	6	530	27	28	19	24	1.98
2924062--2924680	84	7.4	84	78	7	543	27	28	18	24	1.98
2924331--2924763	56	7.6	56	84	4	410	27	29	19	23	1.98
2924367--2924803	28	15.2	31	73	12	128	27	29	18	24	1.98
2925621--2925697	20	3.8	20	83	6	102	31	15	12	40	1.85
2929965--2930026	32	1.9	32	96	0	115	41	12	8	37	1.73
2929963--2930025	19	3.6	19	70	24	66	39	12	9	38	1.76
2936666--2936706	16	2.6	16	85	14	59	73	7	12	7	1.25
2936944--2937064	56	2.1	56	89	1	179	43	26	11	18	1.84
2938038--2938305	34	8.0	32	79	14	299	19	29	11	39	1.88
2938038--2938305	101	2.7	101	87	6	375	19	29	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938312--2938623	32	9.7	32	81	8	332	29	32	18	19	1.96
2938311--2938623	96	3.2	96	86	2	423	29	32	18	19	1.96
2938685--2938929	52	4.7	53	77	5	234	25	21	16	36	1.94
2938701--2938929	104	2.2	104	84	0	287	25	21	16	36	1.94
2938927--2939249	52	6.1	52	75	10	231	24	23	14	38	1.92
2938845--2939016	87	2.0	87	81	2	202	25	22	18	33	1.97
2939194--2939320	61	2.1	61	89	0	191	24	25	12	37	1.91
2939209--2939390	60	3.0	60	82	5	199	24	25	12	37	1.91
2941433--2941458	13	2.0	13	100	0	52	38	15	15	30	1.88
2943653--2943697	21	2.1	21	84	8	56	53	4	20	22	1.63
2945501--2945531	15	2.1	15	93	0	53	48	16	22	12	1.80
2947610--2947648	13	3.0	13	88	0	60	30	20	12	35	1.90
2949510--2949553	14	3.4	14	75	18	58	34	4	13	47	1.63
2949502--2949553	25	2.1	25	100	0	104	36	3	11	48	1.58
2950283--2950308	13	2.0	13	100	0	52	38	15	15	30	1.88
2952500--2952566	22	3.1	22	75	16	68	34	20	8	35	1.84
2952606--2952665	22	2.5	25	76	18	72	30	26	8	35	1.86
2952618--2952665	22	2.1	23	92	3	80	29	25	10	35	1.89
2955559--2955599	16	2.6	16	85	14	59	73	7	12	7	1.25
2955837--2955957	56	2.1	56	87	4	172	44	26	10	18	1.82
2956931--2957198	34	8.0	32	79	14	299	19	29	11	39	1.88
2956931--2957198	101	2.7	101	87	6	375	19	29	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2957205--2957516	32	9.7	32	81	8	332	29	32	18	19	1.96
2957204--2957516	96	3.2	96	86	2	423	29	32	18	19	1.96
2957578--2957822	52	4.7	53	77	5	234	25	21	16	36	1.94
2957594--2957822	104	2.2	104	84	0	287	25	21	16	36	1.94
2957738--2957909	87	2.0	87	82	2	211	26	22	18	33	1.97
2957989--2958142	52	3.0	52	86	1	202	24	23	16	36	1.94
2957932--2958130	104	1.9	103	82	5	249	23	23	15	38	1.92
2958087--2958213	61	2.1	61	89	0	191	24	25	12	37	1.91
2958102--2958283	60	3.0	60	82	5	199	24	25	12	37	1.91
2960235--2960287	20	2.6	21	87	3	72	39	13	16	30	1.87
2960326--2960351	13	2.0	13	100	0	52	38	15	15	30	1.88
2962545--2962589	21	2.1	21	84	8	56	53	4	20	22	1.63
2964393--2964423	15	2.1	15	93	0	53	48	16	22	12	1.80
2966502--2966540	13	3.0	13	88	0	60	30	20	12	35	1.90
2968402--2968445	14	3.4	14	75	18	58	34	4	13	47	1.63
2968394--2968445	25	2.1	25	100	0	104	36	3	11	48	1.58
2969175--2969200	13	2.0	13	100	0	52	38	15	15	30	1.88
2971392--2971458	22	3.1	22	75	16	68	34	20	8	35	1.84
2971498--2971557	22	2.5	25	76	18	72	30	26	8	35	1.86
2971510--2971557	22	2.1	23	92	3	80	29	25	10	35	1.89
2976544--2976601	20	2.9	19	84	7	71	36	12	17	34	1.87
2980621--2980659	19	2.1	19	95	0	69	23	5	33	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2982666--2982838	79	2.2	80	85	1	231	34	14	22	28	1.93
2983037--2983102	28	2.4	26	78	14	71	31	21	24	22	1.98
2982868--2983180	110	2.9	106	85	7	405	33	16	23	26	1.96
2985613--2985642	13	2.3	13	100	0	60	40	13	16	30	1.87
2985624--2985678	20	2.8	20	88	0	83	41	14	16	27	1.87
2986319--2986415	39	2.5	40	81	11	119	42	10	28	18	1.83
2986319--2986418	41	2.5	40	82	6	123	43	10	29	18	1.82
2986446--2986521	40	1.9	40	86	0	107	42	14	21	22	1.89
2986438--2986743	129	2.4	125	81	6	337	40	12	27	19	1.88
2986435--2986786	42	8.1	42	74	15	233	39	13	27	19	1.88
2986466--2986786	87	3.7	85	79	11	271	37	13	28	20	1.91
2986830--2987024	45	4.4	45	80	8	227	35	12	30	21	1.91
2986606--2987129	238	2.2	235	87	4	734	34	13	30	20	1.92
2986963--2987218	105	2.4	106	87	3	367	30	15	30	23	1.95
2987167--2987365	45	4.6	45	70	9	144	35	12	29	23	1.91
2987167--2987365	87	2.3	88	80	7	210	35	12	29	23	1.91
2987347--2987472	60	2.1	60	85	5	175	23	20	30	25	1.99
2987440--2987527	45	2.0	44	90	2	140	28	14	27	29	1.95
2987484--2988363	61	14.5	61	84	4	1111	29	19	26	25	1.98
2987484--2988363	123	7.2	123	85	4	1167	29	19	26	25	1.98
2987484--2988363	184	4.8	184	85	4	1138	29	19	26	25	1.98
2988357--2988487	34	4.0	32	75	7	120	33	13	30	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2991830--2991865	17	2.1	17	89	0	54	8	33	11	47	1.69
2994704--2994859	79	2.0	80	81	7	185	37	13	22	26	1.91
2994881--2994949	28	2.5	28	95	0	120	28	13	34	23	1.92
2994868--2995207	107	3.2	106	82	4	292	33	15	25	26	1.95
2994955--2995200	107	2.3	106	87	2	348	35	15	21	26	1.94
2995144--2995321	51	3.5	50	81	5	198	33	12	24	28	1.93
2997669--2997698	13	2.3	13	100	0	60	40	13	16	30	1.87
2997622--2997744	62	2.0	63	83	4	160	39	16	16	28	1.90
3011309--3011483	77	2.2	77	84	4	217	17	25	13	44	1.85
3011391--3011482	43	2.2	43	88	2	132	15	26	15	43	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17