genome.fa.s44.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Length:  3265628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1994 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3154268--3154310	13	2.9	14	81	18	52	37	16	16	30	1.91
3161227--3161254	3	9.3	3	100	0	56	32	35	0	32	1.58
3162807--3162834	13	2.2	13	100	0	56	39	17	14	28	1.89
3162883--3162943	19	3.1	20	84	11	90	32	16	14	36	1.89
3162924--3162950	13	2.1	13	100	0	54	40	14	14	29	1.86
3165668--3165708	21	2.0	21	85	9	57	41	9	7	41	1.66
3165807--3165857	20	2.6	20	84	3	59	27	15	13	43	1.85
3165921--3165970	19	2.6	19	87	9	66	34	12	22	32	1.90
3170611--3170650	20	2.0	20	85	9	55	30	42	22	5	1.75
3172804--3172854	20	2.6	19	87	3	75	31	11	11	45	1.77
3172903--3172966	33	2.0	32	90	3	101	35	10	18	34	1.86
3172901--3172987	20	4.8	18	73	20	58	35	10	19	34	1.86
3181102--3181148	20	2.3	20	96	0	85	21	21	10	46	1.81
3182096--3182263	79	2.1	79	82	2	203	30	13	24	31	1.93
3182197--3182317	51	2.4	51	88	2	181	27	8	29	34	1.86
3182251--3182499	79	3.2	77	80	6	277	31	10	26	31	1.90
3182151--3182393	130	1.9	130	86	3	346	31	9	26	32	1.88
3182457--3182527	28	2.5	28	86	8	92	28	19	28	23	1.99
3182302--3182687	186	2.1	186	82	5	451	31	13	26	28	1.94
3182487--3182798	79	3.9	79	84	0	356	33	12	26	27	1.93
3182487--3182781	158	1.9	158	86	0	428	31	13	27	27	1.94
3185738--3185850	43	2.6	42	75	9	129	43	10	25	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3185640--3185800	77	2.1	75	81	10	179	41	11	24	21	1.87
3185737--3186010	42	6.8	41	71	13	138	41	11	25	21	1.86
3185718--3186011	157	1.9	158	83	5	389	41	11	25	21	1.86
3185893--3186010	44	2.8	42	82	11	134	44	11	23	20	1.83
3188775--3188819	21	2.1	21	84	8	56	53	4	20	22	1.63
3190623--3190653	15	2.1	15	93	0	53	48	16	22	12	1.80
3192737--3192774	20	1.9	20	94	0	67	23	15	10	50	1.75
3192709--3192766	28	2.1	28	100	0	116	20	15	10	53	1.71
3192760--3192824	13	5.0	13	94	0	112	30	18	15	35	1.92
3192761--3192824	26	2.5	26	100	0	128	31	18	15	34	1.93
3194595--3194630	14	2.6	14	90	0	54	50	5	13	30	1.65
3194604--3194632	14	2.1	14	100	0	58	41	6	13	37	1.72
3195391--3195417	13	2.1	13	100	0	54	40	14	14	29	1.86
3196172--3196991	62	13.4	60	79	5	750	31	19	24	25	1.98
3196172--3196991	124	6.7	123	81	4	852	31	19	24	25	1.98
3196169--3196994	186	4.5	185	82	5	847	30	19	24	25	1.98
3200214--3200468	79	3.2	78	77	8	241	29	24	12	32	1.93
3207097--3207122	13	2.0	13	100	0	52	38	15	15	30	1.88
3207835--3207974	62	2.3	62	81	9	162	37	11	22	29	1.89
3207884--3208009	61	2.1	61	83	0	153	35	11	25	27	1.90
3209025--3209099	20	3.7	20	77	13	89	37	13	17	32	1.88
3209046--3209112	22	3.1	22	75	16	86	35	13	20	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3209026--3209117	42	2.2	42	94	0	166	38	11	19	30	1.88
3212206--3212260	21	2.6	21	85	0	65	18	21	0	60	1.37
3212221--3212264	21	2.1	21	91	0	70	20	18	0	61	1.35
3212686--3212726	21	2.0	21	85	0	55	19	24	7	48	1.74
3214557--3214629	20	3.6	20	81	3	101	35	13	19	31	1.91
3214575--3214650	21	3.7	21	80	3	100	42	11	17	28	1.84
3214557--3214650	41	2.3	41	98	0	179	39	12	18	29	1.88
3214689--3214714	13	2.0	13	100	0	52	38	15	15	30	1.88
3218776--3218806	15	2.1	15	93	0	53	48	16	22	12	1.80
3220862--3220900	20	2.0	20	89	0	60	23	12	10	53	1.69
3220886--3220924	13	3.0	13	96	0	69	30	17	15	35	1.91
3223327--3223399	20	3.6	20	81	3	101	35	13	19	31	1.91
3223345--3223420	21	3.7	21	80	3	100	42	11	17	28	1.84
3223327--3223420	41	2.3	41	98	0	179	39	12	18	29	1.88
3223459--3223484	13	2.0	13	100	0	52	38	15	15	30	1.88
3224340--3224411	20	3.6	20	96	0	135	34	13	15	36	1.87
3224412--3224442	10	3.1	10	95	0	53	41	3	29	25	1.71
3224854--3224982	52	2.5	52	85	2	170	33	17	25	23	1.96
3225383--3225470	33	2.7	33	94	0	149	21	21	29	27	1.99
3226564--3226644	24	3.4	23	79	18	85	17	0	8	74	1.06
3226564--3226643	26	3.4	25	80	19	91	17	0	8	73	1.07
3226591--3226641	21	2.3	23	90	10	79	13	0	9	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3241127--3241205	20	3.9	19	78	14	77	36	10	17	35	1.84
3241229--3241253	13	1.9	13	100	0	50	24	16	20	40	1.91
3254401--3254473	28	2.6	27	87	8	94	24	17	32	24	1.97
3254478--3254580	53	1.9	54	92	2	172	36	9	23	30	1.87
3256867--3256933	33	2.0	33	85	0	89	43	17	14	23	1.87
3256953--3257020	19	3.9	18	76	23	83	38	14	11	35	1.83
3256975--3256999	13	1.9	13	100	0	50	32	16	16	36	1.90
3256956--3257018	32	2.0	32	96	0	117	36	15	12	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!