genome.fa.s44.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Length:  3265628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  6  of  17  ( 1994 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840260--840332	11	7.6	10	76	15	66	86	13	0	0	0.58
840260--840337	1	78.0	1	71	0	57	85	12	1	0	0.65
840588--840639	1	52.0	1	76	0	50	88	7	3	0	0.62
840587--840645	16	3.6	17	76	19	63	84	8	6	0	0.77
840587--840639	18	3.0	17	88	2	70	86	9	3	0	0.68
840588--840642	23	2.4	23	85	11	78	87	7	5	0	0.68
841695--841740	23	2.0	23	95	0	83	28	32	21	17	1.96
841735--842143	33	12.4	33	91	4	657	28	33	18	20	1.96
842143--842573	49	9.1	49	79	11	468	24	25	18	31	1.97
842280--842564	52	6.1	43	76	13	228	23	26	18	31	1.98
842138--842573	92	4.6	92	87	5	586	23	26	18	31	1.97
843431--843455	13	1.9	13	100	0	50	36	16	16	32	1.90
843411--843476	32	2.0	33	88	2	98	33	12	15	39	1.84
843518--843663	52	2.8	50	87	6	211	34	18	17	29	1.94
847544--847577	15	2.3	15	94	0	59	85	0	14	0	0.60
848549--848888	61	5.5	61	84	4	443	25	27	19	28	1.98
848890--848994	41	2.5	42	84	7	135	17	26	8	47	1.76
848978--849091	34	3.3	34	81	6	140	19	28	14	36	1.92
852075--852622	79	7.0	79	81	4	561	28	25	13	31	1.94
852082--852621	158	3.4	156	83	5	633	28	26	13	31	1.94
852556--852668	51	2.2	51	83	0	136	29	27	11	31	1.92
852475--852752	130	2.1	130	81	2	308	26	25	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852397--852777	209	1.8	209	82	7	488	26	25	14	32	1.95
852605--852787	79	2.3	79	82	9	221	24	25	16	32	1.96
853800--854022	87	2.6	87	84	3	270	44	17	17	19	1.87
853889--854026	43	3.2	43	69	10	138	44	18	18	19	1.87
853867--854027	87	1.9	86	96	1	295	44	18	19	18	1.88
853858--854000	44	3.2	44	69	10	130	45	18	19	16	1.86
855033--855082	20	2.4	21	74	16	50	2	26	2	70	1.09
858508--859029	155	3.4	154	75	7	457	39	21	16	22	1.92
1040284--1040336	20	2.7	20	85	8	72	41	16	13	28	1.86
1046481--1046505	13	1.9	13	100	0	50	32	20	16	32	1.94
1046617--1046662	21	2.2	20	81	11	58	32	19	4	43	1.71
1048275--1048342	29	2.3	29	94	0	118	33	2	20	42	1.67
1049070--1049122	20	2.7	20	85	8	72	41	16	13	28	1.86
1050475--1050605	34	3.9	34	96	0	244	41	37	0	20	1.53
1050480--1050582	25	4.4	23	65	26	65	40	38	0	20	1.53
1055307--1055353	20	2.3	20	96	0	85	38	40	0	21	1.53
1055285--1055387	53	2.0	49	90	7	161	39	39	0	20	1.53
1055327--1055425	34	3.0	34	94	4	168	41	39	0	19	1.51
1056645--1056671	12	2.2	12	100	0	54	22	7	11	59	1.56
1056747--1056805	30	2.0	30	93	3	102	40	8	22	28	1.83
1057371--1057427	19	2.9	19	86	2	78	33	17	14	35	1.90
1057473--1057524	13	4.5	13	71	26	53	32	11	17	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058177--1058264	19	4.9	19	80	18	100	32	11	19	36	1.87
1058217--1058241	13	1.9	13	100	0	50	36	16	16	32	1.90
1058198--1058261	32	2.0	32	96	0	119	34	12	17	35	1.87
1058282--1058306	13	1.9	13	100	0	50	32	16	16	36	1.90
1058315--1058439	52	2.4	52	94	0	214	36	17	17	28	1.93
1063145--1063183	13	3.0	13	88	0	60	35	15	15	33	1.89
1063577--1063612	18	2.0	18	94	0	63	27	19	16	36	1.93
1075726--1075962	118	2.0	118	97	0	447	45	10	16	28	1.79
1077009--1077034	13	2.0	13	100	0	52	38	15	15	30	1.88
1077058--1077115	20	2.9	20	97	0	107	46	10	8	34	1.69
1077103--1077127	13	1.9	13	100	0	50	44	16	0	40	1.47
1077083--1077146	33	1.9	33	87	0	92	42	12	7	37	1.72
1086418--1086553	48	2.8	48	78	1	137	33	12	25	28	1.92
1086473--1086719	88	2.8	88	84	0	332	31	15	23	29	1.96
1086743--1086957	32	6.8	32	82	5	247	18	20	33	28	1.96
1087084--1087381	62	4.9	64	74	12	209	32	12	32	22	1.91
1087225--1087642	27	14.2	27	75	17	318	31	13	33	21	1.92
1087225--1087608	63	6.6	54	77	15	313	31	13	33	21	1.92
1087307--1087701	27	12.7	34	76	16	194	32	13	33	21	1.92
1087280--1087402	62	2.0	61	89	7	187	33	13	33	19	1.91
1087171--1087418	116	2.1	116	85	2	329	31	12	33	22	1.92
1087368--1087642	63	4.6	61	82	7	303	33	13	32	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087099--1087640	269	2.0	269	85	3	734	33	13	31	22	1.92
1087576--1087701	34	3.7	34	91	1	180	31	12	35	19	1.90
1088910--1088957	22	2.2	23	82	14	57	4	2	14	79	0.98
1091319--1091392	20	3.8	20	81	12	91	33	16	13	36	1.88
1091341--1091393	19	2.7	20	88	2	81	30	16	15	37	1.90
1091422--1091474	20	2.7	19	88	11	72	33	15	18	32	1.92
1092938--1093087	80	1.9	81	83	4	196	35	8	23	33	1.84
1094381--1094433	19	2.7	19	85	8	72	33	11	20	33	1.88
1096223--1096333	53	2.1	53	88	1	170	40	15	16	27	1.88
1096278--1096455	73	2.4	73	87	0	266	40	14	16	28	1.88
1096400--1096454	20	2.7	19	83	8	65	41	10	18	29	1.84
1096515--1096566	20	2.5	21	78	9	63	30	17	15	36	1.91
1097449--1097556	33	3.2	32	69	10	83	17	24	16	41	1.89
1097317--1097562	66	3.7	66	77	10	223	16	21	17	43	1.87
1098583--1098976	151	2.6	150	81	10	430	34	7	7	50	1.61
1099104--1099159	24	2.3	25	78	12	62	26	3	1	67	1.16
1099792--1099825	16	2.1	16	100	0	68	23	5	11	58	1.55
1100918--1101356	158	2.8	155	80	6	431	27	13	18	40	1.88
1101009--1101356	156	2.2	158	81	5	402	27	13	18	39	1.89
1103289--1103345	13	3.9	13	76	24	60	35	14	17	33	1.90
1103269--1103364	32	3.0	32	98	1	183	34	12	18	34	1.89
1103268--1103383	19	6.7	19	75	22	121	33	11	18	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103405--1103429	13	1.9	13	100	0	50	32	16	16	36	1.90
1103438--1103566	52	2.5	52	96	0	231	35	17	18	27	1.94
1107123--1107164	8	5.9	7	81	13	50	85	2	11	0	0.68
1107132--1107162	10	2.9	11	90	9	55	87	0	12	0	0.55
1107131--1107165	16	2.2	16	95	5	63	88	0	11	0	0.51
1108150--1108203	20	2.7	20	100	0	108	29	11	20	38	1.87
1108252--1108277	13	2.0	13	100	0	52	38	15	15	30	1.88
1108233--1108297	33	2.0	33	87	6	96	41	16	13	27	1.87
1111768--1111798	15	2.1	15	93	0	53	48	16	22	12	1.80
1113862--1113900	13	3.0	13	96	0	69	30	17	15	35	1.91
1114012--1114057	21	2.2	20	81	11	58	32	19	4	43	1.71
1116389--1116414	13	2.0	13	100	0	52	38	15	15	30	1.88
1116370--1116434	33	2.0	33	87	6	96	41	16	13	27	1.87
1117263--1117567	88	3.5	87	79	5	283	24	16	11	47	1.80
1117287--1117540	44	5.8	44	67	8	113	24	16	12	47	1.80
1118458--1118486	14	2.1	14	100	0	58	27	10	20	41	1.85
1118670--1118760	41	2.2	41	84	0	110	16	26	18	38	1.92
1118846--1119254	41	10.0	41	66	7	193	18	24	14	41	1.89
1118794--1119060	82	3.3	82	77	9	231	19	23	14	42	1.88
1118846--1119254	82	5.0	81	78	4	281	18	24	14	41	1.89
1119021--1119312	82	3.6	82	80	5	236	17	25	15	41	1.88
1119558--1120521	41	23.7	41	70	7	464	19	24	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119506--1119772	82	3.3	82	77	9	231	19	23	14	42	1.88
1118689--1120025	712	1.9	712	99	0	2656	19	23	15	42	1.89
1120019--1120134	40	2.9	41	80	5	110	17	23	16	43	1.88
1119927--1120158	122	1.9	122	80	5	272	16	22	16	43	1.87
1120249--1120593	41	8.5	39	71	13	137	20	22	14	43	1.87
1120249--1120562	123	2.5	121	75	9	294	19	23	14	42	1.87
1120008--1120562	164	3.4	162	79	8	529	19	23	14	42	1.88
1121482--1121752	145	1.9	144	89	2	427	39	8	7	44	1.63
1123991--1124042	24	2.2	24	100	0	104	21	3	15	59	1.52
1134248--1134322	20	3.8	20	92	3	125	34	16	20	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17