genome.fa.s44.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Length:  3265628

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  7  of  17  ( 1994 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134911--1134953	22	2.0	22	90	0	68	41	27	0	30	1.56
1138018--1138169	79	1.9	79	89	0	232	30	13	29	26	1.94
1138103--1138222	51	2.4	51	84	2	161	27	12	30	30	1.93
1138024--1138278	130	2.0	130	81	3	307	31	13	26	28	1.94
1138995--1139096	33	3.1	31	84	10	123	37	18	13	30	1.90
1139736--1139787	22	2.4	22	93	0	86	25	34	3	36	1.74
1147583--1147618	6	5.7	6	93	6	54	69	2	0	27	1.02
1147761--1147842	41	2.0	41	97	0	155	50	12	21	15	1.77
1148172--1148224	18	2.9	18	82	0	70	33	26	20	18	1.96
1148232--1148362	55	2.4	55	85	2	183	32	38	21	8	1.83
1148302--1148362	18	3.3	18	75	11	61	32	39	21	6	1.79
1148310--1148405	43	2.2	43	88	0	138	32	36	20	10	1.87
1148482--1148515	17	2.0	17	94	0	59	79	2	17	0	0.86
1151864--1151916	20	2.7	19	85	5	61	33	16	13	35	1.88
1160382--1160425	23	1.9	24	86	9	65	40	20	6	31	1.79
1160946--1160972	13	2.1	13	100	0	54	40	14	14	29	1.86
1165595--1165657	33	1.9	33	83	6	83	31	15	14	38	1.88
1171100--1171301	78	2.6	79	82	3	228	29	16	29	24	1.97
1171257--1171324	28	2.4	28	87	0	91	25	19	32	23	1.97
1171313--1171646	52	6.3	52	68	17	188	32	12	25	29	1.92
1171469--1171537	27	2.5	27	88	6	95	23	21	30	24	1.99
1171199--1171591	107	3.7	105	73	11	332	31	14	26	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171246--1171651	212	1.9	212	89	3	629	31	13	26	28	1.94
1171528--1171646	51	2.3	53	84	7	145	33	10	22	32	1.89
1174003--1174028	13	2.0	13	100	0	52	38	15	15	30	1.88
1173982--1174048	33	2.0	33	88	0	98	43	16	14	25	1.86
1174068--1174135	19	3.9	18	76	23	83	38	14	11	35	1.83
1174090--1174114	13	1.9	13	100	0	50	32	16	16	36	1.90
1174071--1174133	32	2.0	32	96	0	117	36	15	12	34	1.86
1174195--1174220	13	2.0	13	100	0	52	15	7	0	76	0.99
1176490--1176514	13	1.9	13	100	0	50	32	16	16	36	1.90
1178808--1178833	13	2.0	13	100	0	52	38	15	15	30	1.88
1178790--1178854	34	2.0	33	90	6	105	46	15	10	27	1.79
1186499--1186699	52	3.9	52	94	1	332	30	17	18	33	1.94
1186688--1186712	13	1.9	13	100	0	50	36	16	16	32	1.90
1186753--1186819	33	2.0	33	88	0	98	40	13	11	34	1.81
1186775--1186799	13	1.9	13	100	0	50	32	16	16	36	1.90
1187713--1188262	43	12.1	43	78	11	535	30	17	26	25	1.97
1187713--1188262	92	6.0	92	89	2	844	30	17	26	25	1.97
1187713--1188262	184	3.0	184	95	1	959	30	17	26	25	1.97
1188307--1188433	32	4.0	32	85	7	170	16	18	36	28	1.93
1188419--1188481	33	1.9	33	83	6	83	36	15	25	22	1.94
1188431--1188512	35	2.4	35	81	4	96	36	10	31	20	1.88
1188480--1188683	27	7.1	27	76	13	158	27	14	34	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1188507--1188728	62	3.7	60	78	7	225	28	15	33	22	1.94
1188512--1188728	120	1.8	119	83	4	292	27	15	34	22	1.95
1190099--1190209	1	111.0	1	70	0	69	0	0	14	84	0.67
1190099--1190211	27	4.3	27	80	14	128	0	0	15	84	0.68
1190100--1190209	50	2.2	49	87	12	156	0	0	14	84	0.67
1199027--1199057	15	2.1	15	93	0	53	48	16	22	12	1.80
1201140--1201177	13	2.9	13	92	0	58	31	18	18	31	1.95
1203725--1203750	13	2.0	13	100	0	52	38	15	15	30	1.88
1203707--1203771	34	2.0	32	87	6	94	46	16	12	24	1.82
1205157--1205241	20	4.7	20	72	20	78	37	21	10	30	1.87
1205176--1205243	33	2.1	33	97	0	127	35	22	11	30	1.90
1210690--1211797	97	11.4	97	91	1	1751	29	16	26	26	1.97
1211877--1212335	35	13.8	34	82	10	481	33	13	33	18	1.91
1211877--1212335	69	6.9	68	88	6	499	33	13	33	18	1.91
1212178--1212289	27	3.9	27	74	17	89	30	14	34	20	1.92
1212145--1212361	62	3.5	63	92	0	348	31	13	34	20	1.92
1212240--1212361	27	4.1	27	72	18	82	31	13	33	21	1.92
1212303--1212361	27	2.1	28	90	3	93	28	15	35	20	1.93
1212367--1212610	31	8.0	31	82	11	267	29	16	29	24	1.96
1212395--1212605	31	6.9	30	85	10	279	28	17	29	24	1.97
1212710--1212747	16	2.3	17	86	4	51	26	5	23	44	1.74
1213905--1213943	20	1.9	21	84	5	53	2	2	15	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220827--1220952	52	2.4	52	97	0	234	26	19	18	35	1.94
1220827--1220969	52	2.8	52	92	2	207	27	18	18	34	1.95
1221026--1221079	19	2.8	19	85	0	81	33	20	14	31	1.93
1221921--1222493	48	11.8	48	87	2	781	30	17	26	25	1.97
1221866--1222493	97	6.4	97	90	2	918	30	17	26	25	1.97
1221921--1222536	145	4.3	145	87	5	862	30	17	26	25	1.97
1222573--1222969	34	11.8	34	83	7	454	34	13	33	18	1.90
1222573--1222969	138	3.0	132	83	6	469	34	13	33	18	1.90
1222875--1222935	27	2.3	27	94	0	104	27	14	39	18	1.90
1222842--1222995	62	2.5	62	92	1	245	29	14	37	18	1.91
1222902--1222970	35	2.0	35	88	0	102	31	13	39	15	1.86
1222937--1222995	27	2.1	28	84	3	75	28	15	35	20	1.93
1223017--1223398	31	12.5	30	81	10	384	31	15	27	24	1.96
1223036--1223393	123	2.9	122	90	3	506	30	16	27	25	1.97
1223005--1223393	154	2.5	152	87	6	520	30	16	27	25	1.97
1223498--1223535	16	2.3	17	86	4	51	26	5	23	44	1.74
1223796--1223820	13	1.9	13	100	0	50	36	16	16	32	1.90
1224369--1224431	19	3.3	18	83	12	81	34	15	17	31	1.92
1224343--1224404	32	1.9	33	90	3	99	30	17	14	37	1.90
1224370--1224425	20	2.8	20	89	7	80	32	17	17	32	1.94
1224470--1224522	13	4.5	13	73	26	64	32	13	16	37	1.88
1224454--1224522	33	2.1	33	91	5	113	30	13	18	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227432--1227494	33	1.9	33	83	6	83	36	9	17	36	1.82
1232227--1232709	156	3.1	152	78	6	438	39	19	15	24	1.91
1234314--1234350	11	3.2	12	85	11	51	2	16	0	81	0.81
1234812--1235217	166	2.4	167	83	6	477	52	6	10	30	1.60
1236340--1236727	84	4.5	85	77	10	251	44	12	22	20	1.85
1236559--1236730	88	2.0	87	86	3	238	44	12	22	21	1.85
1236778--1236965	43	4.3	43	78	3	171	39	17	25	17	1.91
1236768--1236972	86	2.4	86	80	2	214	38	17	24	19	1.93
1237039--1237231	41	4.7	41	84	1	208	37	10	30	20	1.87
1237041--1237253	41	5.2	40	81	4	167	38	11	30	19	1.87
1237106--1237677	164	3.5	164	77	6	477	41	13	25	18	1.88
1237236--1237677	41	10.8	42	66	14	165	42	14	24	18	1.87
1237205--1237677	82	5.8	81	76	7	420	42	14	24	18	1.87
1237724--1238690	88	11.1	87	73	10	515	41	14	22	22	1.89
1237680--1238690	132	7.7	132	78	5	881	41	14	22	21	1.89
1237724--1238694	44	22.2	43	69	13	371	41	14	22	22	1.89
1238706--1238805	35	2.9	35	83	1	112	43	11	25	21	1.85
1239026--1239392	89	4.1	88	83	5	411	28	14	27	29	1.95
1239026--1239392	177	2.1	177	82	5	438	28	14	27	29	1.95
1239671--1239901	88	2.6	87	77	2	248	45	12	16	25	1.83
1243657--1243720	19	3.7	18	75	25	75	31	12	17	39	1.87
1243659--1243726	32	2.1	32	94	0	118	32	11	17	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243678--1243702	13	1.9	13	100	0	50	36	16	16	32	1.90
1243807--1243935	52	2.5	52	96	0	240	34	17	18	28	1.94
1247410--1247547	68	2.0	68	98	0	267	30	27	14	27	1.95
1248445--1248496	20	2.6	20	84	0	59	1	15	5	76	1.05
1252378--1252405	13	2.2	13	100	0	56	28	14	17	39	1.89
1260491--1260545	16	3.5	15	87	7	83	87	12	0	0	0.55
1260492--1260545	17	3.2	17	92	7	85	88	11	0	0	0.50
1260492--1260536	1	45.0	1	81	0	54	91	8	0	0	0.43
1261987--1262222	27	8.7	27	71	13	171	23	35	13	27	1.92
1261990--1262192	53	3.8	52	76	15	184	23	34	13	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17