genome.fa.s511.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626522--1626662	52	2.7	52	87	4	196	30	17	18	34	1.94
1626651--1626675	13	1.9	13	100	0	50	36	16	16	32	1.90
1626741--1626765	13	1.9	13	100	0	50	32	16	16	36	1.90
1626719--1626785	33	2.0	33	88	0	98	40	13	11	34	1.81
1626823--1626864	21	2.0	21	90	0	66	35	14	14	35	1.86
1627585--1627976	168	2.3	171	92	4	673	36	14	24	24	1.93
1627760--1627976	64	3.7	62	79	9	180	35	14	23	25	1.93
1627880--1628116	43	5.1	47	78	14	274	31	18	25	24	1.97
1627890--1628124	92	2.5	93	92	4	393	32	18	25	24	1.97
1628144--1628236	33	2.8	33	92	6	154	15	20	36	27	1.92
1628238--1628431	35	5.5	35	87	10	272	35	12	34	18	1.88
1628241--1628431	71	2.7	70	92	3	305	35	12	34	18	1.88
1628440--1628589	33	4.3	36	83	9	204	35	12	32	19	1.89
1628354--1628523	87	1.9	88	92	1	288	32	14	33	19	1.91
1628442--1628593	70	2.2	70	97	0	286	35	12	32	19	1.89
1628284--1629180	157	5.9	156	86	9	1195	33	12	33	20	1.90
1628597--1628746	33	4.3	36	81	9	195	36	12	32	19	1.88
1628512--1628680	87	1.9	87	96	0	311	35	13	31	19	1.90
1628599--1629822	70	16.8	70	75	14	567	33	12	33	20	1.90
1628669--1628837	87	1.9	87	95	0	302	34	13	32	19	1.90
1628754--1629217	34	13.3	34	83	10	546	32	12	34	20	1.90
1629226--1629375	33	4.3	36	80	9	186	35	11	32	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1629138--1629309	87	2.0	88	95	1	310	33	12	33	19	1.90
1629236--1629796	157	3.8	146	82	9	695	33	12	33	20	1.90
1629298--1629464	87	1.9	87	96	0	307	35	13	31	19	1.91
1629383--1629890	34	14.9	33	79	12	528	32	12	34	20	1.90
1629694--1629915	61	3.5	62	82	11	245	30	13	35	21	1.91
1629905--1629971	31	2.2	31	97	0	125	23	16	34	25	1.95
1630958--1630989	16	1.9	17	93	6	57	0	6	9	84	0.78
1631229--1631300	12	6.7	11	84	15	98	0	0	9	90	0.46
1631229--1631298	31	2.3	31	97	0	131	0	0	10	90	0.47
1631229--1631303	1	75.0	1	81	0	87	0	0	9	90	0.45
1638193--1638311	52	2.3	52	97	0	220	28	17	18	35	1.94
1638193--1638333	52	2.7	52	87	4	196	30	17	18	34	1.94
1638322--1638346	13	1.9	13	100	0	50	36	16	16	32	1.90
1638412--1638436	13	1.9	13	100	0	50	32	16	16	36	1.90
1638390--1638456	33	2.0	33	88	0	98	40	13	11	34	1.81
1638494--1638535	21	2.0	21	90	0	66	35	14	14	35	1.86
1639256--1639647	168	2.3	171	92	4	673	36	14	24	24	1.93
1639431--1639647	64	3.7	62	79	9	180	35	14	23	25	1.93
1639551--1639787	43	5.1	47	78	14	274	31	18	25	24	1.97
1639561--1639795	92	2.5	93	92	4	393	32	18	25	24	1.97
1639810--1639903	33	2.8	34	92	6	149	18	20	36	25	1.95
1647353--1647407	22	2.5	22	100	0	110	61	9	10	18	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1648321--1648395	20	3.8	20	80	3	80	40	12	13	34	1.81
1648318--1648395	40	2.0	39	87	2	111	39	12	12	34	1.82
1648769--1648886	49	2.5	46	78	8	130	31	20	27	20	1.97
1648921--1649013	31	3.0	31	89	7	143	19	17	33	30	1.95
1648943--1649093	80	1.9	79	93	4	259	18	19	30	31	1.96
1649022--1649911	32	29.2	31	86	6	932	19	18	32	29	1.96
1649894--1650331	27	16.0	27	89	1	633	29	14	33	23	1.94
1649894--1650331	82	5.3	81	89	1	633	29	14	33	23	1.94
1657776--1657830	22	2.5	22	100	0	110	61	9	10	18	1.54
1658744--1658818	20	3.8	20	80	3	80	40	12	13	34	1.81
1658741--1658818	40	2.0	39	87	2	111	39	12	12	34	1.82
1660792--1660829	20	2.0	20	94	5	69	36	15	10	36	1.82
1660864--1660916	20	2.7	20	91	2	81	33	22	13	30	1.92
1660944--1661000	19	2.9	19	84	2	78	35	17	15	31	1.92
1665327--1665351	13	1.9	13	100	0	50	36	16	16	32	1.90
1665307--1665373	33	2.0	33	88	0	98	32	11	14	40	1.83
1665414--1665438	13	1.9	13	100	0	50	32	16	16	36	1.90
1665427--1665564	52	2.7	53	85	4	174	35	15	16	31	1.91
1665453--1665566	52	2.2	52	91	0	183	38	16	16	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!