genome.fa.s511.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569294--569595	61	4.8	60	76	16	216	20	35	12	31	1.90
569368--569491	27	4.1	27	75	17	86	21	36	12	29	1.90
568975--569595	293	2.1	291	85	9	810	21	34	12	32	1.90
569130--569648	105	5.2	103	78	14	516	21	35	11	31	1.89
569633--569774	33	4.4	33	88	10	206	28	37	18	16	1.92
569637--569767	65	2.0	66	92	5	221	28	36	19	16	1.93
569767--570135	49	7.8	48	84	8	461	25	26	18	29	1.98
569767--570135	92	3.9	90	83	9	386	25	26	18	29	1.98
570045--570198	52	2.9	53	79	4	184	24	23	15	36	1.94
570148--570274	67	1.9	68	86	1	184	23	25	12	38	1.90
570876--570929	21	2.7	21	82	5	67	33	14	12	38	1.85
571733--571883	49	3.2	47	73	14	150	37	14	23	24	1.93
571694--571928	92	2.5	91	87	4	319	35	14	23	25	1.94
571753--571923	43	3.8	43	77	10	173	32	16	24	25	1.96
571986--572275	57	5.0	58	85	5	320	23	16	29	30	1.97
571991--572276	29	9.9	29	80	6	321	23	17	29	30	1.97
571945--572276	86	3.8	85	86	5	346	22	16	29	31	1.96
571979--572270	143	2.0	144	92	2	480	22	17	29	31	1.96
576660--576788	52	2.5	52	94	0	222	29	17	17	35	1.93
576849--576946	32	3.0	32	89	1	142	37	16	9	36	1.80
577343--577410	1	68.0	1	79	0	73	0	0	10	89	0.48
577328--577412	11	7.8	12	78	15	62	0	0	15	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577325--577407	6	13.8	6	80	14	91	0	0	14	85	0.60
577325--577412	9	9.8	9	82	14	85	0	0	14	85	0.60
577337--577410	11	6.7	11	87	9	98	0	0	12	87	0.53
577325--577410	41	2.1	42	89	6	131	0	0	13	86	0.58
591389--591440	19	2.6	21	87	6	72	32	17	13	36	1.89
592441--592488	21	2.3	20	82	10	62	41	0	18	39	1.51
600592--600629	12	3.2	12	88	0	58	28	28	0	42	1.56
602229--602254	13	2.0	13	100	0	52	38	15	15	30	1.88
602552--602653	41	2.5	41	96	0	186	36	7	7	48	1.61
604715--604946	112	2.1	112	100	0	464	40	15	13	30	1.86
610764--610840	20	3.8	20	86	6	111	40	12	15	31	1.85
611522--611711	61	3.1	61	79	6	204	22	20	11	45	1.82
611646--611843	79	2.5	79	77	8	204	22	18	12	46	1.82
612663--612718	20	2.6	22	88	8	80	32	14	14	39	1.86
614197--614221	13	1.9	13	100	0	50	24	8	0	68	1.16
626630--626715	33	2.5	32	81	14	91	80	12	3	3	0.97
628153--628215	28	2.2	28	91	2	99	22	33	17	26	1.96
628189--628317	34	3.8	34	92	0	213	19	34	12	34	1.89
628285--628364	27	3.0	27	96	0	151	21	36	16	26	1.94
628397--628485	28	3.0	30	79	14	103	32	26	17	22	1.97
628773--628908	52	2.6	52	86	6	170	25	25	18	30	1.98
628687--628856	91	1.9	87	83	7	216	24	24	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628641--628997	143	2.6	138	84	7	429	25	25	19	30	1.98
628922--629365	49	9.5	48	74	14	320	25	23	18	32	1.97
628818--629259	88	4.9	88	85	5	530	26	24	18	31	1.98
628958--629123	39	4.0	39	73	15	127	30	24	18	27	1.98
630094--630156	19	3.6	19	74	24	75	33	9	19	38	1.84
630092--630163	32	2.2	32	95	0	126	34	9	18	37	1.83
630186--630242	20	2.8	20	89	5	80	31	14	14	40	1.85
630208--630273	33	2.0	33	93	0	114	27	12	16	43	1.83
636554--636651	16	6.2	16	78	4	83	5	16	34	43	1.70
637162--637204	18	2.4	19	80	11	54	37	0	4	58	1.19
637345--637656	156	2.0	156	90	2	493	25	11	15	48	1.78
638186--638225	16	2.5	16	95	0	71	0	22	37	40	1.54
638266--638304	16	2.4	16	91	0	60	20	23	23	33	1.97
639358--639388	13	2.4	13	88	0	53	35	12	16	35	1.87
639339--639403	33	2.0	33	82	11	80	33	20	12	33	1.89
643809--643880	28	2.6	28	88	0	99	23	19	34	22	1.96
643869--644101	104	2.2	105	80	9	262	31	10	25	31	1.90
643869--644104	52	4.5	53	76	13	236	32	10	25	31	1.90
646463--646488	13	2.0	13	100	0	52	38	15	15	30	1.88
646442--646508	33	2.0	33	88	0	98	43	16	14	25	1.86
646528--646595	19	3.9	18	76	23	83	38	14	11	35	1.83
646550--646574	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646531--646593	32	2.0	32	96	0	117	36	15	12	34	1.86
653087--653140	20	2.7	20	77	5	56	42	20	7	29	1.79
656673--656784	52	2.1	52	83	8	136	35	16	22	25	1.95
656636--656784	55	2.8	55	79	5	162	33	16	23	26	1.96
656744--656826	42	2.0	42	90	4	132	26	20	24	28	1.99
656947--657205	30	8.8	30	79	8	223	25	16	29	28	1.97
658675--658785	1	111.0	1	78	0	96	0	0	12	87	0.55
658677--658785	16	6.4	17	80	13	118	0	0	12	87	0.55
658675--658785	28	3.9	28	85	11	145	0	0	12	87	0.55
658675--658785	50	2.3	47	89	9	163	0	0	12	87	0.55
662433--662458	13	2.0	13	100	0	52	30	15	15	38	1.88
664984--665009	13	2.0	13	100	0	52	38	15	15	30	1.88
664995--665094	20	4.8	20	81	11	110	46	14	14	26	1.81
668919--668963	21	2.1	21	84	8	56	22	20	4	53	1.63
671181--671206	13	2.0	13	100	0	52	30	15	15	38	1.88
678384--678410	10	2.7	10	100	0	54	77	22	0	0	0.76
682383--682452	19	3.6	19	86	1	95	38	20	15	25	1.92
688740--688924	93	2.0	92	92	1	307	22	22	17	36	1.95
690393--690457	32	2.0	33	87	3	96	43	13	12	30	1.81
694103--694190	29	3.0	27	73	12	68	39	17	17	26	1.91
694186--694377	58	3.4	57	80	7	219	52	10	12	24	1.70
708658--708713	23	2.6	21	83	13	69	83	8	5	1	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708658--708723	28	2.4	29	82	10	84	81	10	6	1	0.92
708682--708723	14	2.9	15	85	7	59	83	11	4	0	0.79
708672--708713	21	1.9	23	90	9	70	85	9	2	2	0.77
709745--709829	37	2.3	37	97	0	161	25	14	15	44	1.84
710194--710559	29	12.9	28	86	6	445	30	29	16	22	1.96
710194--710554	112	3.2	111	88	5	501	31	29	17	22	1.96
710188--710590	55	7.2	55	81	9	393	31	29	17	22	1.96
710194--710593	83	4.7	83	81	9	382	31	28	17	22	1.97
710194--710619	112	3.8	109	83	10	423	31	28	17	22	1.97
710667--710734	21	3.2	21	64	25	52	25	25	17	32	1.97
710649--710781	49	2.9	44	78	10	151	29	24	15	30	1.96
710647--711094	52	9.0	48	74	10	221	27	24	15	32	1.96
710689--711089	52	7.8	51	76	7	287	26	24	16	32	1.96
710689--711089	101	3.9	101	77	8	337	26	24	16	32	1.96
710689--711088	153	2.6	148	79	7	390	26	24	16	32	1.96
715088--715115	12	2.3	12	100	0	56	0	14	0	85	0.59
722162--722210	12	4.2	12	86	5	73	81	0	18	0	0.69
722160--722219	23	2.6	23	86	5	77	78	0	20	1	0.84
722930--722955	13	2.0	13	100	0	52	38	15	15	30	1.88
725175--725219	21	2.1	21	84	8	56	53	4	20	22	1.63
727023--727053	15	2.1	15	93	0	53	48	16	22	12	1.80
730968--731006	20	2.0	20	100	0	78	33	5	35	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731727--731752	13	2.0	13	100	0	52	38	15	15	30	1.88
735131--735254	59	2.1	60	90	3	205	25	32	17	24	1.97
735688--735741	20	2.7	20	85	0	63	33	12	12	40	1.82
737545--738254	355	2.0	355	95	0	1285	34	16	20	28	1.94
740615--740793	43	3.7	49	77	10	172	32	18	25	22	1.97
740498--740801	52	6.2	48	72	11	190	32	17	25	24	1.96
740810--741166	29	12.6	28	83	6	375	20	17	30	31	1.95
740810--741159	57	6.2	57	87	4	451	20	17	29	32	1.96
740810--741159	86	4.1	85	86	4	440	20	17	29	32	1.96
740810--741167	85	4.2	82	85	6	423	20	17	30	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12