genome.fa.s511.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  9  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224631--1224696	32	2.0	33	88	2	98	33	12	15	39	1.84
1224737--1224761	13	1.9	13	100	0	50	32	16	16	36	1.90
1224770--1224898	52	2.5	52	93	0	222	34	17	17	30	1.94
1238578--1238603	13	2.0	13	100	0	52	38	15	15	30	1.88
1238560--1238623	32	2.0	33	87	3	94	40	14	17	28	1.88
1240820--1240864	21	2.1	21	84	8	56	53	4	20	22	1.63
1242586--1242616	15	2.1	15	93	0	53	48	16	22	12	1.80
1244695--1244720	13	2.0	13	100	0	52	30	15	15	38	1.88
1244841--1244886	21	2.2	20	81	11	58	32	19	4	43	1.71
1246520--1246563	14	3.4	14	75	18	58	34	4	13	47	1.63
1246512--1246563	25	2.1	25	100	0	104	36	3	11	48	1.58
1246631--1246690	30	2.0	30	100	0	120	36	6	26	30	1.82
1247333--1247358	13	2.0	13	100	0	52	38	15	15	30	1.88
1247315--1247378	32	2.0	33	87	3	94	40	17	14	28	1.88
1248619--1248726	33	3.3	32	85	12	141	82	14	0	1	0.81
1248624--1248726	47	2.2	47	84	8	129	82	15	0	1	0.76
1248618--1248719	38	2.7	38	81	4	125	82	14	0	1	0.81
1248636--1248707	1	72.0	1	71	0	54	86	11	0	2	0.68
1250151--1250440	29	9.6	30	76	11	197	28	27	15	27	1.96
1250211--1250263	27	2.0	27	92	0	88	33	33	16	15	1.90
1250302--1250376	35	2.2	34	82	2	96	24	29	9	37	1.86
1250367--1250490	28	4.3	29	83	9	139	37	29	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250510--1250711	49	3.9	52	83	7	250	25	23	15	35	1.94
1251520--1251544	13	1.9	13	100	0	50	36	16	16	32	1.90
1251500--1251565	32	2.0	33	88	2	98	33	12	15	39	1.84
1251606--1251631	13	2.0	13	100	0	52	30	15	15	38	1.88
1251619--1251747	52	2.5	52	92	0	213	34	17	17	31	1.92
1254146--1255458	672	2.0	663	88	2	1977	29	23	18	29	1.98
1257700--1257944	123	2.0	123	92	1	411	31	12	15	40	1.85
1258652--1258683	16	2.0	16	100	0	64	43	12	12	31	1.80
1268093--1268165	34	2.1	35	85	7	96	16	16	12	54	1.70
1269530--1269556	13	2.1	13	100	0	54	29	14	14	40	1.86
1270981--1271025	19	2.4	19	92	0	72	28	8	20	42	1.82
1271070--1271095	13	2.0	13	100	0	52	30	15	15	38	1.88
1273430--1273555	48	2.6	48	94	2	216	25	25	13	35	1.92
1273617--1273690	28	2.7	26	81	18	89	21	29	20	28	1.98
1273483--1273666	81	2.4	75	80	9	208	25	26	14	34	1.94
1273675--1273792	51	2.3	51	88	2	175	32	27	10	29	1.90
1275821--1275849	4	7.2	4	100	0	58	24	0	0	75	0.80
1283090--1283139	19	2.6	19	96	0	91	32	12	18	38	1.87
1283168--1283295	52	2.5	52	88	2	186	35	18	19	26	1.95
1297109--1297228	29	4.0	30	82	12	131	83	14	2	0	0.75
1297109--1297222	48	2.4	48	85	11	162	83	14	2	0	0.75
1297109--1297228	44	2.8	44	86	9	167	83	14	2	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1297111--1297216	1	106.0	1	69	0	68	84	12	2	0	0.72
1298648--1298816	28	6.0	28	83	9	200	31	31	17	19	1.95
1298648--1298816	58	3.0	55	85	6	196	31	31	17	19	1.95
1298797--1298886	32	2.8	33	82	3	119	20	32	14	33	1.92
1298926--1299026	35	2.9	35	81	10	109	18	29	13	37	1.90
1299257--1299629	39	8.6	40	72	16	241	25	25	19	29	1.98
1299158--1299492	136	2.5	136	92	0	546	25	25	18	31	1.98
1299330--1299677	87	4.0	87	92	0	570	25	25	18	29	1.98
1300579--1300603	13	1.9	13	100	0	50	32	16	16	36	1.90
1301435--1301460	13	2.0	13	100	0	52	30	15	15	38	1.88
1309283--1309411	52	2.5	52	96	0	231	30	17	17	34	1.93
1309283--1309431	52	2.9	51	89	4	219	31	17	17	33	1.93
1309420--1309444	13	1.9	13	100	0	50	36	16	16	32	1.90
1309420--1309499	34	2.4	34	97	0	151	33	12	20	33	1.90
1309522--1309585	33	1.9	33	87	0	92	42	15	12	29	1.84
1311840--1311902	1	63.0	1	77	0	63	88	9	1	0	0.57
1311842--1311902	16	3.7	16	86	4	86	88	9	1	0	0.58
1317256--1317383	52	2.5	52	94	1	222	30	17	17	35	1.93
1317455--1317512	20	3.0	20	84	2	73	46	13	10	29	1.77
1317548--1317596	21	2.2	21	85	10	62	40	10	14	34	1.79
1318228--1318255	13	2.2	13	100	0	56	39	17	14	28	1.89
1318307--1318359	20	2.6	21	84	3	72	28	16	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318347--1318375	13	2.2	13	100	0	58	37	13	17	31	1.89
1318361--1318411	20	2.5	20	80	0	57	35	15	13	35	1.87
1320699--1320739	22	2.0	21	86	13	59	41	4	21	31	1.74
1320870--1320908	13	3.0	13	80	0	51	28	15	17	38	1.91
1323474--1323518	22	2.0	22	95	0	81	17	28	11	42	1.84
1325069--1325141	27	2.7	27	86	2	92	23	32	21	21	1.98
1325124--1325345	52	4.3	51	79	2	219	29	25	12	33	1.92
1325333--1325395	28	2.2	28	85	0	81	22	30	20	26	1.98
1326954--1327314	34	11.3	33	73	13	196	20	32	14	32	1.93
1326933--1327110	33	5.6	31	70	9	137	21	31	15	31	1.94
1326933--1327157	63	3.6	63	92	2	346	21	32	15	31	1.94
1327092--1327315	34	6.9	34	79	11	247	20	34	12	32	1.90
1326933--1327191	126	2.1	127	84	6	341	21	32	14	31	1.93
1327092--1327333	95	2.5	95	86	8	326	20	34	12	32	1.90
1327165--1327281	61	1.9	61	94	3	209	22	35	13	28	1.92
1327315--1327681	33	11.2	33	91	3	598	27	34	18	19	1.95
1327315--1327681	98	3.7	99	94	2	607	27	34	18	19	1.95
1327300--1327681	131	2.9	129	91	5	608	27	34	18	19	1.95
1327727--1328000	43	6.1	43	81	11	325	25	24	17	31	1.97
1327676--1328053	92	4.1	92	92	3	596	25	25	16	32	1.97
1327840--1327907	21	3.2	21	63	19	50	26	27	16	29	1.97
1327954--1328107	52	2.9	53	80	6	186	25	23	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328865--1328889	13	1.9	13	100	0	50	36	16	16	32	1.90
1328845--1328906	32	1.9	33	96	3	117	33	11	19	35	1.87
1328844--1328927	19	4.7	19	77	18	99	33	10	17	38	1.85
1328970--1328997	13	2.2	13	100	0	56	28	14	17	39	1.89
1329003--1329130	52	2.5	52	96	0	238	35	17	18	28	1.94
1332220--1332644	41	10.3	41	71	8	243	16	25	14	43	1.87
1332219--1332644	42	10.3	42	70	10	234	16	25	14	43	1.87
1332374--1332642	123	2.2	123	81	4	301	17	24	14	43	1.86
1333403--1333428	13	2.0	13	100	0	52	30	15	15	38	1.88
1333488--1333560	20	3.6	20	81	3	101	31	19	13	35	1.91
1333467--1333560	41	2.3	41	96	0	170	30	18	12	38	1.88
1333467--1333542	21	3.7	21	78	3	91	30	17	11	40	1.85
1335990--1336028	13	3.0	13	96	0	69	35	15	17	30	1.91
1336014--1336092	20	3.7	20	75	18	70	45	15	13	25	1.83
1338108--1338138	15	2.1	15	93	0	53	12	22	16	48	1.80
1342202--1342227	13	2.0	13	100	0	52	30	15	15	38	1.88
1342287--1342359	20	3.6	20	81	3	101	31	19	13	35	1.91
1342266--1342359	41	2.3	41	96	0	170	30	18	12	38	1.88
1342266--1342341	21	3.7	21	78	3	91	30	17	11	40	1.85
1342652--1342787	42	3.2	42	78	6	116	16	25	16	42	1.87
1342721--1342810	42	2.2	41	82	6	110	14	24	18	42	1.88
1343078--1343119	20	2.1	20	86	0	57	33	14	7	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1348782--1348999	115	1.9	115	91	1	357	31	12	16	39	1.86
1350077--1350130	25	2.3	23	84	12	65	55	12	18	12	1.69
1350556--1350667	57	2.0	55	86	6	154	8	19	15	57	1.63
1359477--1359553	20	3.8	20	77	6	84	40	14	15	29	1.87
1360396--1360452	26	2.2	26	81	6	62	26	7	19	47	1.74
1360408--1360625	115	1.9	115	90	3	350	30	13	16	39	1.87
1361747--1361808	25	2.6	23	82	14	65	58	11	19	11	1.62
1361725--1361826	51	2.0	51	83	7	127	53	13	20	11	1.71
1362257--1362371	57	2.1	55	85	6	151	8	17	15	58	1.62
1365555--1365608	20	2.7	20	85	8	74	38	9	18	33	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12