genome.fa.s511.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071604--1072262	61	11.3	61	69	15	369	35	14	25	23	1.93
1071850--1071901	22	2.3	23	93	6	90	25	21	26	26	1.99
1071991--1072491	52	9.3	51	72	16	311	36	15	23	23	1.94
1071732--1072314	113	5.1	113	80	6	603	35	14	25	24	1.94
1072287--1072491	103	2.0	103	83	5	263	39	15	21	22	1.91
1072086--1072491	155	2.5	159	75	10	400	37	15	23	24	1.93
1072514--1072933	31	13.2	31	79	8	371	20	17	30	31	1.95
1072514--1072925	63	6.5	62	77	7	389	20	16	30	32	1.95
1072557--1072921	64	5.7	64	78	8	241	21	16	30	32	1.95
1072926--1073046	33	3.7	33	84	4	154	38	12	28	20	1.89
1073034--1073178	30	4.8	30	72	16	120	33	14	28	23	1.94
1078042--1078100	20	2.9	21	76	5	66	37	11	11	38	1.79
1079205--1079239	17	2.1	17	89	5	54	51	2	0	45	1.16
1085355--1085426	21	3.5	20	79	5	72	38	13	13	33	1.85
1085602--1085629	14	2.0	14	100	0	56	28	21	7	42	1.79
1087347--1087840	141	3.5	143	80	5	558	42	11	11	33	1.78
1088760--1088784	13	1.9	13	100	0	50	40	8	20	32	1.81
1091427--1091465	13	3.0	13	100	0	78	38	15	15	30	1.88
1093314--1093344	15	2.1	15	93	0	53	12	22	16	48	1.80
1095148--1095192	21	2.1	21	84	8	56	22	20	4	53	1.63
1097409--1097434	13	2.0	13	100	0	52	30	15	15	38	1.88
1097389--1097452	32	2.0	33	87	3	94	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098473--1098512	10	3.9	10	83	3	53	2	15	0	82	0.77
1098472--1098524	22	2.5	22	81	3	63	1	20	0	77	0.87
1098483--1098525	12	3.6	12	83	0	59	0	23	0	76	0.78
1099175--1099508	165	2.0	165	82	6	399	53	8	11	25	1.66
1100609--1100754	44	3.3	44	69	5	107	39	10	27	22	1.88
1101134--1101159	13	2.0	13	100	0	52	30	15	15	38	1.88
1103478--1103656	51	3.5	51	83	2	200	30	25	10	34	1.90
1103640--1104007	76	4.8	76	81	5	348	27	24	13	34	1.93
1103592--1104049	79	5.9	77	78	8	342	28	25	13	32	1.94
1105036--1106045	44	22.9	44	75	7	537	38	16	25	19	1.92
1105036--1106046	89	11.4	89	76	7	639	38	16	25	19	1.92
1105035--1106160	132	8.5	134	77	7	743	38	16	25	19	1.92
1106147--1106269	35	3.5	35	90	0	192	42	11	24	21	1.86
1106147--1106295	35	4.3	35	88	0	190	41	11	23	23	1.87
1106127--1106294	70	2.4	70	82	0	192	42	11	23	22	1.86
1107604--1107747	43	3.3	43	70	6	128	50	12	15	21	1.76
1109174--1109219	7	6.6	7	92	7	76	0	0	13	86	0.56
1112546--1112589	22	2.0	22	86	0	61	36	2	9	52	1.46
1113033--1113349	165	1.9	165	84	0	418	28	11	10	50	1.71
1113549--1113581	14	2.3	15	94	5	59	33	3	0	63	1.10
1113872--1113912	13	3.2	12	83	12	55	73	0	26	0	0.84
1113866--1113907	20	2.2	18	87	8	57	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114844--1115202	141	2.5	143	85	4	501	34	10	12	42	1.77
1115575--1116236	155	4.3	154	79	6	614	22	18	20	38	1.94
1115594--1116145	154	3.6	152	82	5	515	23	18	21	37	1.94
1119432--1119560	52	2.5	52	93	0	231	28	18	18	34	1.95
1119569--1119593	13	1.9	13	100	0	50	36	16	16	32	1.90
1119638--1119708	32	2.2	32	92	0	115	38	16	12	32	1.87
1121621--1122138	142	3.7	138	81	6	513	44	11	10	33	1.75
1122887--1122941	28	1.9	29	82	10	69	52	23	7	16	1.68
1123037--1123088	21	2.5	21	85	11	72	1	19	1	76	0.97
1123753--1124029	154	1.8	153	81	6	337	48	9	10	32	1.68
1128768--1128899	38	3.5	38	79	8	99	41	19	11	27	1.86
1131745--1131791	21	2.3	20	78	10	51	42	4	19	34	1.70
1131911--1131936	13	2.0	13	100	0	52	30	23	15	30	1.95
1138249--1138590	58	5.9	58	74	7	255	46	14	11	26	1.79
1138313--1138639	174	1.9	174	82	5	419	47	14	12	26	1.79
1139777--1139815	15	2.6	15	88	8	53	66	0	33	0	0.92
1141039--1141085	16	3.1	15	85	8	53	42	6	0	51	1.27
1141051--1141091	16	2.5	16	88	4	55	39	4	0	56	1.21
1141180--1141206	14	1.9	14	100	0	54	37	0	0	62	0.95
1156422--1156503	33	2.8	28	75	18	76	34	9	24	31	1.88
1156441--1156502	33	1.9	32	93	3	106	35	8	22	33	1.84
1157072--1157125	19	2.8	19	85	2	63	31	11	18	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158439--1158482	21	2.2	20	84	8	54	61	0	11	27	1.30
1158886--1158915	16	1.9	16	93	6	53	50	13	6	30	1.67
1160443--1160759	107	3.0	105	83	2	391	37	8	23	29	1.85
1160785--1161122	168	2.0	169	94	0	588	41	14	15	28	1.86
1163996--1164053	21	2.8	19	80	17	55	41	5	18	34	1.73
1165482--1165648	84	2.0	85	79	4	185	35	9	22	32	1.87
1167502--1167614	54	2.1	53	83	8	149	46	15	15	23	1.84
1167904--1167949	20	2.2	21	80	7	58	80	8	8	2	0.99
1169093--1169546	158	2.9	155	80	5	520	39	11	12	36	1.80
1169521--1169557	17	2.2	16	95	4	65	78	0	0	21	0.75
1174687--1174712	13	2.0	13	100	0	52	30	15	15	38	1.88
1174751--1174826	21	3.7	21	80	3	100	28	17	11	42	1.84
1174772--1174844	20	3.6	20	81	3	101	31	19	13	35	1.91
1174751--1174844	41	2.3	41	98	0	179	29	18	12	39	1.88
1177261--1177299	13	3.0	13	96	0	69	35	15	17	30	1.91
1177285--1177363	20	3.7	20	75	18	70	45	15	13	25	1.83
1179378--1179408	15	2.1	15	93	0	53	12	22	16	48	1.80
1182737--1182762	13	2.0	13	100	0	52	30	15	15	38	1.88
1182801--1182876	21	3.7	21	80	3	100	28	17	11	42	1.84
1182822--1182894	20	3.6	20	81	3	101	31	19	13	35	1.91
1182801--1182894	41	2.3	41	98	0	179	29	18	12	39	1.88
1190524--1190555	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191990--1192084	43	2.2	44	83	5	113	16	28	13	41	1.87
1192016--1192211	87	2.3	87	79	3	207	17	33	14	34	1.90
1192208--1192964	42	18.4	42	73	11	415	14	23	18	42	1.88
1192260--1192336	36	2.1	37	85	7	104	12	19	20	46	1.83
1192208--1192884	125	5.5	126	77	8	475	14	23	18	43	1.87
1192235--1192884	167	4.0	162	76	10	511	14	23	19	42	1.88
1192798--1192946	38	3.8	38	76	10	120	16	23	22	38	1.93
1192672--1192983	80	3.9	80	78	5	279	15	24	20	40	1.90
1192699--1192972	122	2.2	121	77	13	283	14	24	20	40	1.90
1194146--1194202	26	2.2	26	84	9	71	66	15	12	5	1.41
1195287--1195733	162	2.8	159	76	8	442	38	10	13	37	1.79
1195717--1195754	17	2.2	17	90	0	58	76	0	2	21	0.91
1200989--1201042	20	2.7	20	91	2	90	31	16	11	40	1.84
1201664--1201771	52	2.1	52	83	0	135	34	19	20	25	1.96
1201706--1201942	52	4.6	50	75	7	172	31	15	23	29	1.95
1201713--1201947	103	2.3	103	81	0	274	31	14	24	29	1.95
1202027--1202148	33	3.7	33	85	3	158	31	14	24	28	1.95
1202020--1202148	66	2.0	65	86	4	179	31	15	24	29	1.95
1202649--1202719	35	2.0	35	97	0	133	38	12	18	30	1.88
1202870--1202896	14	1.9	14	100	0	54	29	7	33	29	1.85
1206262--1206302	20	2.0	20	100	0	82	24	19	14	41	1.89
1214858--1214925	19	3.9	19	78	21	85	35	11	14	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214879--1214903	13	1.9	13	100	0	50	36	16	16	32	1.90
1214860--1214922	32	2.0	32	96	0	117	34	12	15	36	1.86
1214965--1214991	13	2.1	13	100	0	54	29	14	14	40	1.86
1217459--1217527	27	2.5	27	88	2	93	24	31	21	21	1.98
1217404--1217796	107	3.7	105	71	12	307	27	27	14	30	1.95
1217514--1217682	52	3.3	53	76	12	172	28	25	13	32	1.93
1217671--1217739	28	2.5	28	87	0	93	21	31	20	26	1.98
1219582--1219645	27	2.4	27	100	0	128	17	18	40	23	1.91
1221719--1221774	19	2.8	19	83	5	67	41	12	17	28	1.86
1224651--1224675	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12