genome.fa.s511.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905323--906334	49	21.0	49	75	10	795	23	25	17	32	1.97
905327--906281	101	10.0	96	87	4	1130	23	25	18	32	1.97
905529--906132	43	13.1	43	72	15	406	24	25	18	31	1.97
905763--905839	39	2.0	39	89	0	118	28	25	20	24	1.99
905802--906325	52	10.7	52	72	13	373	24	26	17	32	1.97
907086--907148	19	3.6	19	76	24	84	33	12	15	38	1.86
907105--907161	13	3.9	13	74	24	51	36	14	14	35	1.86
907084--907193	32	3.4	32	93	0	184	36	13	14	35	1.86
907232--907259	13	2.2	13	100	0	56	28	14	17	39	1.89
907212--907277	33	2.0	33	88	5	98	30	16	13	39	1.87
913049--913074	13	2.0	13	100	0	52	38	15	15	30	1.88
913031--913094	32	2.0	33	87	3	94	40	17	14	28	1.88
914744--914811	19	3.9	19	78	21	85	35	11	14	38	1.83
914746--914808	32	2.0	32	96	0	117	34	12	15	36	1.86
914765--914789	13	1.9	13	100	0	50	36	16	16	32	1.90
914851--914876	13	2.0	13	100	0	52	30	15	15	38	1.88
914831--914897	33	2.0	33	85	0	89	26	14	16	41	1.87
917340--917510	51	3.3	51	79	4	198	29	26	11	32	1.92
917493--917574	28	2.9	28	82	7	96	24	31	17	26	1.97
929975--930012	13	2.9	13	92	0	58	84	5	10	0	0.77
929976--930048	15	4.7	15	76	8	65	82	4	13	0	0.81
931009--931640	55	11.4	55	87	5	820	28	31	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931231--931316	26	3.2	26	66	15	66	29	33	18	18	1.95
931010--931640	110	5.7	110	88	5	923	28	31	20	19	1.97
931011--931640	165	3.8	165	88	4	914	28	31	20	19	1.97
931701--931768	19	3.9	19	78	21	85	35	11	14	38	1.83
931703--931765	32	2.0	32	96	0	117	34	12	15	36	1.86
931722--931746	13	1.9	13	100	0	50	36	16	16	32	1.90
931808--931833	13	2.0	13	100	0	52	30	15	15	38	1.88
931788--931854	33	2.0	33	85	0	89	26	14	16	41	1.87
940047--940085	16	2.6	14	85	14	60	89	5	0	5	0.58
941533--941885	34	11.0	33	78	12	289	20	33	13	33	1.91
941764--941844	27	3.0	27	87	0	117	22	35	14	27	1.93
941858--941952	28	3.3	28	91	2	145	35	31	16	15	1.91
941969--942615	52	12.8	49	78	7	548	24	24	17	33	1.96
941969--942615	101	6.4	100	79	5	644	24	24	17	33	1.96
943369--943422	21	2.7	21	85	5	76	37	12	16	33	1.87
943410--943435	13	2.0	13	100	0	52	38	15	15	30	1.88
946926--946962	16	2.3	16	90	0	56	2	2	8	86	0.76
946933--946963	16	1.9	16	100	0	62	0	0	12	87	0.55
950972--951025	20	2.7	20	88	0	72	33	11	16	38	1.84
952736--952803	19	3.9	19	78	21	85	35	11	14	38	1.83
952757--952781	13	1.9	13	100	0	50	36	16	16	32	1.90
952738--952800	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952843--952868	13	2.0	13	100	0	52	30	15	15	38	1.88
952823--952889	33	2.0	33	85	0	89	26	14	14	43	1.85
955335--955403	27	2.5	27	88	6	95	26	30	21	21	1.99
955359--955561	78	2.6	77	77	12	214	28	26	14	30	1.95
955430--955480	26	2.0	26	88	3	77	25	25	15	33	1.95
955281--955481	107	1.9	107	81	11	250	28	27	15	28	1.96
955517--955593	28	2.8	28	87	0	100	23	33	19	23	1.97
955468--955672	107	1.9	107	81	5	243	26	28	16	29	1.97
955547--955748	78	2.6	80	81	5	234	23	30	17	28	1.97
957649--957717	27	2.6	27	88	0	111	24	39	15	20	1.92
958736--958761	13	2.0	13	100	0	52	30	15	15	38	1.88
959468--959511	21	2.1	21	83	8	54	25	31	4	38	1.76
961316--961354	13	3.0	13	100	0	78	38	15	15	30	1.88
965252--965296	21	2.1	21	84	8	56	22	20	4	53	1.63
967509--967534	13	2.0	13	100	0	52	30	15	15	38	1.88
975407--975447	21	2.0	21	85	9	57	36	14	12	36	1.84
975487--975556	20	3.6	19	77	9	70	38	17	14	30	1.89
975633--975701	21	3.0	22	77	22	86	24	23	13	39	1.90
975633--975726	26	3.7	27	87	10	130	25	21	12	40	1.89
975751--975789	13	3.0	13	92	0	69	30	15	17	35	1.91
976490--976515	13	2.0	13	100	0	52	38	15	15	30	1.88
978730--978774	21	2.1	21	84	8	56	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985293--985318	13	2.0	13	100	0	52	38	15	15	30	1.88
987021--987095	32	2.7	25	75	24	87	18	32	4	45	1.68
991058--991112	20	2.8	20	83	5	67	41	12	12	32	1.81
994203--994243	17	2.4	17	83	0	55	85	7	0	7	0.75
995506--995833	28	11.6	28	88	3	430	28	30	17	23	1.97
996735--996921	51	3.9	50	70	18	153	32	14	12	41	1.83
996797--996871	20	3.8	20	85	0	96	37	10	13	38	1.79
996746--996921	91	1.9	91	84	0	235	32	13	12	40	1.82
1000634--1000707	20	3.8	20	87	3	96	35	9	14	40	1.79
1008095--1008179	32	2.7	32	92	1	136	25	27	10	36	1.89
1013570--1013645	40	1.9	40	86	0	107	40	11	11	35	1.79
1014337--1014619	61	4.8	60	75	12	235	37	12	25	24	1.91
1014498--1014605	52	2.1	52	84	3	137	33	15	25	25	1.95
1014640--1014755	51	2.2	52	80	4	128	35	14	25	25	1.94
1014695--1014933	52	4.6	51	78	6	189	35	15	25	24	1.94
1014951--1015449	32	15.4	33	79	7	452	21	16	30	31	1.95
1014951--1015449	65	7.7	65	80	7	473	21	16	30	31	1.95
1015617--1015691	31	2.5	31	82	2	98	33	12	28	26	1.92
1019433--1019465	15	2.2	15	89	10	50	36	24	24	15	1.93
1020878--1021610	42	17.5	42	66	13	118	19	25	19	35	1.95
1020873--1022282	168	8.4	167	76	5	918	19	27	17	35	1.95
1020995--1022282	42	30.7	42	74	5	670	19	27	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022221--1022334	42	2.7	42	82	4	113	22	29	17	29	1.97
1022095--1022322	126	1.8	126	79	3	271	19	30	17	32	1.95
1023270--1024117	166	5.1	166	82	5	894	27	11	8	52	1.66
1025260--1025285	13	2.0	13	100	0	52	38	15	15	30	1.88
1028488--1028540	23	2.3	23	83	0	70	45	16	3	33	1.66
1030102--1030178	20	3.8	20	80	11	84	32	12	14	40	1.84
1044910--1044935	13	2.0	13	100	0	52	38	15	15	30	1.88
1044892--1044956	32	2.0	32	87	6	94	40	18	13	27	1.89
1044991--1045028	20	1.9	20	94	0	67	42	13	10	34	1.78
1046548--1046581	12	2.8	12	90	0	50	41	0	35	23	1.55
1046674--1046706	17	2.0	17	88	5	50	60	9	27	3	1.42
1047164--1047215	21	2.4	21	78	9	61	63	3	9	23	1.41
1049668--1049719	19	2.7	20	87	6	79	38	19	13	28	1.89
1053767--1053797	15	2.1	15	93	0	53	48	16	22	12	1.80
1055859--1055883	13	1.9	13	100	0	50	32	16	16	36	1.90
1056004--1056049	21	2.2	20	81	11	58	32	19	4	43	1.71
1058434--1058459	13	2.0	13	100	0	52	38	15	15	30	1.88
1058416--1058479	32	2.0	33	90	3	103	39	18	14	28	1.90
1060983--1061020	13	2.9	13	96	0	67	31	18	15	34	1.92
1061141--1061187	21	2.3	20	82	10	60	31	19	4	44	1.70
1063573--1063627	19	2.9	19	94	0	92	32	20	20	27	1.97
1063876--1063933	19	3.2	19	71	14	68	31	8	10	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063859--1063933	35	2.1	35	97	0	141	33	9	10	46	1.71
1063860--1063917	16	3.4	16	71	13	53	36	10	12	41	1.76
1065407--1065605	43	4.7	44	84	8	234	17	21	15	45	1.85
1065412--1065593	83	2.2	85	84	6	237	16	22	14	46	1.83
1065714--1065792	31	2.5	31	87	0	104	32	34	21	11	1.89
1065744--1065873	68	1.9	68	80	0	152	31	29	21	17	1.96
1065962--1066119	31	4.9	31	77	9	145	29	31	23	15	1.95
1065642--1066123	248	1.9	248	86	0	678	31	27	22	18	1.97
1065962--1066133	68	2.6	67	81	7	201	30	30	23	16	1.96
1069692--1069732	22	1.9	21	85	5	55	53	12	17	17	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12