genome.fa.s511.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Length:  1668812

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403082--403155	28	2.6	28	89	0	112	28	20	27	24	1.99
405245--405353	40	2.7	39	79	8	119	39	12	26	21	1.89
405578--406209	62	10.4	61	82	5	683	28	20	26	24	1.99
409903--410185	140	2.0	140	100	0	566	29	9	30	30	1.89
414366--414583	79	2.8	79	75	8	205	34	16	22	26	1.95
414488--414817	158	2.1	159	81	6	393	31	12	26	29	1.93
414619--414693	28	2.7	27	83	8	89	26	14	30	28	1.95
414673--414792	51	2.4	51	85	0	168	30	11	25	31	1.91
419812--420107	79	3.8	79	81	3	237	34	13	25	27	1.93
419812--420107	157	1.9	156	81	2	360	34	13	25	27	1.93
419990--420214	105	2.1	106	85	5	296	30	14	27	28	1.95
420056--420134	28	2.8	27	84	9	97	32	15	27	24	1.95
419910--420585	183	3.7	184	88	2	921	31	13	26	28	1.94
420094--420291	78	2.5	78	84	6	267	28	14	28	28	1.95
420239--420317	28	2.8	27	84	9	97	31	13	29	25	1.94
420275--420457	79	2.3	80	83	10	225	28	13	28	29	1.94
420356--420690	107	3.1	107	79	7	308	31	14	24	28	1.94
420434--420506	28	2.6	28	80	2	83	31	17	23	27	1.97
420543--420613	28	2.5	28	86	0	88	25	18	28	28	1.98
420576--420724	79	1.9	79	87	2	219	34	15	22	26	1.94
423079--423134	20	2.8	21	89	5	80	48	14	12	25	1.78
423802--423833	14	2.4	14	90	10	50	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424174--424226	8	6.5	8	79	12	54	0	13	5	81	0.86
431605--431642	13	2.9	13	100	0	76	31	15	15	36	1.90
431733--431758	13	2.0	13	100	0	52	38	15	15	30	1.88
431715--431777	33	1.9	32	90	3	99	38	17	14	30	1.89
437934--437959	13	2.0	13	100	0	52	30	15	15	38	1.88
440449--440473	13	1.9	13	100	0	50	32	16	16	36	1.90
440426--440491	33	2.0	33	91	5	107	31	15	15	37	1.88
440564--440589	13	2.0	13	100	0	52	38	15	15	30	1.88
440546--440609	33	2.0	32	87	3	92	39	18	14	28	1.90
443179--443210	2	16.0	2	93	0	55	46	0	0	53	1.00
448053--448179	52	2.5	52	94	1	229	29	17	17	35	1.93
448294--448318	13	1.9	13	100	0	50	32	16	16	36	1.90
448272--448338	33	2.0	33	88	0	98	40	13	11	34	1.81
448376--448417	21	2.0	21	90	0	66	35	14	14	35	1.86
453983--454097	49	2.3	50	90	4	187	43	11	15	29	1.82
459029--459084	21	2.8	21	72	5	62	39	10	16	33	1.83
459144--459199	20	2.7	20	86	5	67	26	17	12	42	1.85
463726--463764	20	1.9	21	89	5	62	41	20	10	28	1.85
464619--464686	33	2.1	32	88	2	100	36	14	13	35	1.85
464758--464786	13	2.2	13	100	0	58	37	13	17	31	1.89
465338--465386	21	2.3	20	86	6	62	24	36	4	34	1.75
465378--465451	37	2.0	37	97	0	139	29	25	5	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471855--471890	9	4.0	9	88	0	54	27	33	0	38	1.57
473481--473506	13	2.0	13	100	0	52	38	15	15	30	1.88
473598--473622	13	1.9	13	100	0	50	32	16	20	32	1.94
473612--473662	20	2.5	20	87	0	66	33	15	15	35	1.90
477334--477358	13	1.9	13	100	0	50	36	16	16	32	1.90
477426--477450	13	1.9	13	100	0	50	36	16	16	32	1.90
477408--477470	32	2.0	32	87	6	92	39	17	14	28	1.89
490366--490538	79	2.2	79	82	0	220	32	16	24	25	1.96
490476--490589	51	2.2	51	85	3	149	30	14	27	28	1.95
490366--490747	209	1.8	209	80	5	468	33	13	25	28	1.93
490524--490966	158	2.8	156	86	2	602	32	12	25	28	1.93
490524--490967	79	5.7	78	84	2	496	32	12	25	28	1.93
490910--491022	57	2.0	58	89	1	174	31	11	29	27	1.92
493465--493559	30	3.5	28	69	27	89	40	15	15	28	1.89
493496--493580	20	3.8	20	70	26	71	42	15	15	27	1.86
493396--493579	50	3.7	50	90	4	266	40	15	16	27	1.88
496236--496353	51	2.3	51	83	0	137	26	25	14	33	1.94
496182--496490	130	2.4	129	86	1	440	28	24	11	34	1.91
496365--496494	51	2.5	51	84	2	170	30	23	10	35	1.89
496523--496640	51	2.3	51	85	2	148	28	28	13	28	1.94
496340--496669	158	2.1	158	80	4	362	29	26	11	32	1.92
496574--496802	79	2.9	79	83	3	282	28	25	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507330--507478	52	2.9	52	89	4	239	31	17	18	32	1.94
507467--507491	13	1.9	13	100	0	50	36	16	16	32	1.90
507532--507598	33	2.0	33	85	0	89	41	14	11	31	1.83
508344--508494	52	2.8	55	80	3	164	35	15	24	25	1.94
508762--508843	34	2.4	36	81	8	107	41	13	25	19	1.88
508762--508852	35	2.6	34	81	5	103	38	12	28	20	1.89
508831--509004	29	5.9	29	79	7	163	25	18	28	27	1.98
508892--508944	27	2.0	27	88	0	79	15	20	30	33	1.93
510448--510497	12	4.3	12	85	10	68	0	0	16	84	0.63
510451--510495	15	3.0	14	87	12	63	0	0	13	86	0.57
510442--510497	27	2.0	27	86	6	76	0	0	16	83	0.64
510442--510495	22	2.5	22	90	3	83	0	0	14	85	0.61
512374--512452	33	2.4	33	100	0	158	39	20	12	27	1.89
512375--512433	13	5.0	13	69	23	58	35	22	13	28	1.92
512388--512452	20	3.6	20	73	26	81	40	20	12	27	1.88
512476--512573	21	4.5	21	88	5	142	36	8	25	29	1.85
512476--512573	43	2.3	43	92	0	169	36	8	25	29	1.85
512561--512591	10	3.1	10	100	0	62	41	9	29	19	1.83
512634--512719	34	2.5	34	96	0	154	27	20	17	33	1.95
512702--512772	20	3.5	20	75	11	65	29	11	16	42	1.83
512812--512852	21	2.0	21	85	9	57	39	9	12	39	1.76
526312--526460	52	2.9	51	86	4	217	32	17	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526449--526473	13	1.9	13	100	0	50	36	16	16	32	1.90
526514--526580	33	2.0	33	85	0	89	40	13	11	34	1.81
529453--529671	62	3.5	62	83	1	287	24	25	19	31	1.98
529661--529960	43	6.8	43	72	12	191	20	26	11	41	1.87
529675--529922	135	1.8	135	86	2	356	22	26	11	39	1.88
529884--530032	43	3.7	42	71	22	99	18	25	14	42	1.87
529933--530007	35	2.2	34	85	7	98	21	25	13	40	1.89
533145--533265	51	2.4	50	80	2	134	28	27	10	33	1.90
533276--533391	51	2.3	51	84	0	151	32	25	10	31	1.89
533085--533421	130	2.6	128	83	3	406	29	26	10	32	1.91
533432--533547	51	2.3	49	82	7	142	27	25	15	31	1.96
533242--533578	157	2.1	158	82	4	396	27	25	14	31	1.95
533482--533696	79	2.7	77	82	8	279	26	23	16	33	1.96
536622--536701	35	2.2	36	84	4	117	27	12	11	48	1.75
537697--537750	20	2.7	20	85	2	72	33	12	16	37	1.87
548983--549032	21	2.4	21	79	0	64	34	8	16	42	1.77
555949--556021	20	3.7	19	79	3	74	38	15	19	27	1.91
555949--556002	19	2.8	20	80	2	65	37	14	20	27	1.92
556729--556825	42	2.3	42	83	3	133	29	20	5	44	1.73
556729--556841	42	2.7	41	82	10	122	31	18	6	43	1.75
560345--560369	13	1.9	13	100	0	50	36	16	16	32	1.90
560327--560391	33	2.0	33	87	0	94	33	12	13	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560432--560492	13	5.2	13	74	22	62	36	13	13	37	1.83
560445--560510	20	3.7	20	67	26	65	39	12	12	36	1.80
560411--560510	33	3.0	33	94	4	166	38	14	12	36	1.83
560478--560622	52	2.8	51	92	4	236	37	17	15	28	1.91
567555--567579	12	2.1	12	100	0	50	76	8	8	8	1.18
568871--569027	31	5.0	31	82	12	169	23	33	15	27	1.95
568877--569033	32	5.1	31	84	9	187	22	33	15	28	1.95
568880--569027	62	2.4	63	86	4	219	23	33	16	26	1.96
569007--569628	34	18.8	34	79	11	586	20	34	12	32	1.90
569104--569164	28	2.2	27	85	2	77	24	34	11	29	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12