genome.fa.s66.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  10  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652846--1652903	24	2.4	23	80	11	64	70	1	1	25	1.06
1652849--1652937	22	3.9	23	78	8	85	66	1	3	29	1.15
1652845--1652907	11	5.6	11	71	22	51	69	1	1	26	1.06
1653132--1653204	4	15.2	5	74	17	50	0	20	2	76	0.90
1660501--1660562	18	3.4	19	82	10	76	37	0	0	62	0.95
1660827--1660857	3	10.3	3	92	0	53	67	3	0	29	1.06
1660856--1660900	3	15.0	3	90	0	72	33	0	2	64	1.06
1662310--1662335	13	2.0	13	100	0	52	76	0	0	23	0.78
1666113--1666142	15	2.0	15	93	0	51	26	10	26	36	1.88
1669641--1669678	14	2.8	14	84	4	51	68	0	0	31	0.90
1669643--1669679	11	3.5	11	82	17	51	67	0	0	32	0.91
1672232--1672342	50	2.2	52	79	8	120	52	1	1	44	1.22
1672292--1672362	20	3.5	19	78	14	70	59	1	0	39	1.06
1673001--1673034	2	17.0	2	100	0	68	50	0	0	50	1.00
1675715--1675747	18	1.9	18	88	11	52	33	0	0	66	0.92
1675709--1675757	22	2.1	24	92	7	84	32	0	0	67	0.91
1677499--1677572	16	4.8	15	73	14	62	40	0	2	56	1.13
1679269--1679299	1	31.0	1	93	0	53	0	0	96	3	0.21
1681782--1681819	3	12.7	3	100	0	76	65	0	0	34	0.93
1682388--1682433	15	2.9	15	81	12	56	54	0	0	45	0.99
1682390--1682433	16	2.8	16	76	13	54	56	0	0	43	0.99
1682809--1682861	17	3.2	17	71	23	51	54	1	1	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684731--1684763	16	2.1	16	100	0	66	27	18	24	30	1.98
1688382--1688443	27	2.3	27	83	5	72	37	6	9	46	1.62
1700552--1700589	17	2.2	18	85	4	51	52	0	2	44	1.14
1702029--1702090	29	2.2	29	80	8	76	32	1	1	64	1.13
1702997--1703042	22	2.1	22	84	11	60	56	0	2	41	1.11
1704372--1704421	2	25.0	2	91	0	82	48	0	4	48	1.20
1710400--1710437	19	2.0	20	89	5	60	55	5	0	39	1.23
1712233--1712301	14	4.9	14	71	13	61	59	0	2	37	1.12
1712210--1712296	46	1.9	45	86	11	124	56	0	3	40	1.16
1712794--1712843	24	2.0	26	84	7	68	40	4	0	56	1.18
1713032--1713064	14	2.3	15	89	5	50	63	0	0	36	0.95
1713561--1713621	32	1.9	32	83	12	81	39	1	3	55	1.26
1713768--1713815	24	2.0	25	84	12	64	45	2	0	52	1.12
1713834--1713889	26	2.2	25	87	3	76	55	0	1	42	1.10
1713842--1713904	26	2.4	26	86	5	83	55	4	0	39	1.21
1719729--1719850	36	3.5	36	84	6	155	62	3	6	27	1.36
1723451--1723490	21	1.9	21	85	10	55	27	0	5	67	1.11
1723988--1724035	17	2.9	16	81	9	51	50	2	0	47	1.12
1723999--1724044	16	2.8	17	83	3	58	47	0	0	52	1.00
1725312--1725341	2	15.0	2	100	0	60	50	0	0	50	1.00
1726007--1726048	21	2.0	21	100	0	84	23	23	9	42	1.83
1728028--1728069	2	21.0	2	90	0	66	45	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730570--1730604	11	3.1	11	91	4	52	74	0	0	25	0.82
1733088--1733131	2	22.0	2	95	0	79	47	2	0	50	1.13
1733250--1733287	7	5.4	7	90	0	58	52	0	5	42	1.24
1733250--1733287	14	2.7	14	95	0	67	52	0	5	42	1.24
1733245--1733330	7	13.8	6	72	17	54	47	0	2	50	1.14
1734350--1734387	15	2.6	15	83	4	51	44	0	0	55	0.99
1734348--1734404	29	2.0	28	83	10	71	43	0	0	56	0.99
1736616--1736764	18	7.9	18	66	15	61	40	0	0	59	0.97
1736615--1736676	16	4.1	16	74	17	69	43	0	0	56	0.99
1736615--1736739	48	2.6	50	75	18	120	43	0	0	56	0.99
1736617--1736712	32	3.1	31	77	21	87	44	0	0	55	0.99
1736615--1736739	50	2.6	47	76	18	123	43	0	0	56	0.99
1736653--1736737	32	2.5	35	81	12	106	44	0	0	55	0.99
1738776--1738861	43	2.0	43	84	4	111	41	5	4	47	1.48
1740924--1741014	30	3.2	30	69	20	86	48	2	3	46	1.31
1744881--1744914	16	2.1	17	94	5	61	38	0	0	61	0.96
1745983--1746050	27	2.5	27	85	0	91	45	4	11	38	1.61
1746287--1746341	25	2.2	25	83	6	67	58	0	5	36	1.21
1749911--1749972	20	3.0	20	79	11	56	50	0	0	50	1.00
1749944--1750001	20	3.0	20	80	5	66	43	0	0	56	0.99
1750428--1750484	19	2.9	19	82	5	78	47	5	1	45	1.35
1750702--1750737	2	18.0	2	94	0	63	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758030--1758066	16	2.4	15	90	4	56	40	0	0	59	0.97
1758050--1758131	23	3.7	23	70	15	55	48	0	3	47	1.19
1758534--1758558	12	2.1	12	100	0	50	84	0	0	16	0.63
1759223--1759253	6	5.2	6	100	0	62	48	16	35	0	1.46
1761320--1761416	14	5.9	17	70	20	57	45	0	1	53	1.07
1761389--1761451	30	2.1	30	87	0	90	53	0	7	38	1.30
1761414--1761458	23	2.0	23	90	0	72	46	2	8	42	1.47
1761820--1761863	20	2.2	20	91	0	70	31	4	0	63	1.14
1766113--1766174	25	2.6	22	73	19	54	54	1	0	43	1.09
1769476--1769528	26	2.1	24	86	6	70	58	1	1	37	1.20
1770475--1770529	22	2.5	22	83	11	69	54	0	1	43	1.10
1770583--1770620	12	3.2	12	82	10	51	63	0	0	36	0.95
1772932--1772961	2	15.0	2	100	0	60	0	0	50	50	1.00
1776561--1776668	27	4.0	27	75	12	89	57	0	0	42	0.98
1776611--1776686	20	3.5	22	76	16	79	55	0	0	44	0.99
1776563--1776685	42	3.1	42	78	17	129	55	0	0	44	0.99
1776960--1777003	10	4.5	10	85	5	63	34	0	0	65	0.93
1778641--1778704	16	3.9	16	73	15	60	57	0	0	42	0.98
1778648--1778713	33	2.0	33	85	5	89	56	0	1	42	1.08
1778554--1778704	42	3.4	46	74	16	124	57	0	1	41	1.07
1779480--1779516	17	2.3	17	86	9	51	51	2	2	43	1.30
1780066--1780092	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1788574--1788636	30	2.1	30	84	0	81	42	1	0	55	1.09
1794233--1794283	24	2.2	24	82	10	61	41	0	0	58	0.98
1794404--1794460	24	2.5	23	80	8	64	42	0	1	56	1.10
1798798--1799029	115	2.0	115	94	0	410	33	19	15	31	1.93
1799047--1799074	2	14.0	2	100	0	56	50	0	0	50	1.00
1802248--1802288	19	2.0	21	86	9	59	51	0	0	48	1.00
1802972--1802998	10	2.7	10	100	0	54	18	7	11	62	1.50
1803585--1803634	18	2.8	18	78	9	57	60	0	2	38	1.09
1803584--1803649	27	2.3	29	82	7	82	60	0	1	37	1.06
1805216--1805290	30	2.5	30	84	4	107	50	0	4	45	1.20
1805643--1805752	11	9.0	13	66	26	55	56	0	1	41	1.10
1805644--1805744	25	4.0	24	72	19	71	55	0	1	42	1.11
1807938--1807975	2	19.0	2	100	0	76	50	0	0	50	1.00
1810142--1810175	2	17.5	2	87	6	52	50	0	2	47	1.16
1810254--1810312	19	3.2	19	72	9	52	45	3	3	47	1.36
1810946--1810986	21	1.9	21	85	14	57	46	2	0	51	1.14
1811150--1811183	13	2.5	14	85	4	52	52	0	2	44	1.16
1813041--1813085	2	22.5	2	100	0	90	48	0	0	51	1.00
1813138--1813167	2	15.0	2	100	0	60	50	0	0	50	1.00
1819146--1819179	3	11.0	3	87	6	50	61	0	0	38	0.96
1819388--1819446	18	3.6	17	80	13	61	30	1	1	66	1.12
1819506--1819554	16	3.4	15	76	23	52	48	2	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820230--1820265	2	18.0	2	100	0	72	0	50	0	50	1.00
1821893--1821949	19	3.2	17	79	13	53	57	1	0	40	1.09
1821878--1821961	37	2.3	37	80	12	93	52	4	0	42	1.22
1822728--1823063	139	2.4	137	88	2	494	42	4	2	50	1.37
1822804--1823063	38	7.3	37	68	22	123	41	5	3	50	1.40
1824359--1824387	12	2.4	12	100	0	58	44	0	0	55	0.99
1825463--1825507	2	24.5	2	82	17	62	51	0	0	48	1.00
1826169--1826195	4	6.8	4	100	0	54	51	22	0	25	1.48
1826315--1826368	28	1.9	27	82	14	65	55	0	7	37	1.28
1826384--1826457	35	2.1	36	82	14	91	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26