genome.fa.s66.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  15  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2512828--2512880	20	2.7	20	72	21	56	41	0	3	54	1.18
2514642--2514676	10	3.5	10	88	0	52	37	0	11	51	1.38
2514674--2514712	2	19.5	2	100	0	78	0	0	48	51	1.00
2516959--2516988	15	2.0	15	100	0	60	13	20	20	46	1.83
2519329--2519354	5	5.2	5	100	0	52	0	42	0	57	0.98
2519599--2519632	18	1.9	18	94	5	61	17	23	17	41	1.90
2521832--2521883	19	2.6	19	80	20	54	46	0	1	51	1.12
2523426--2523486	22	2.8	22	85	5	79	29	6	6	57	1.49
2523489--2523538	22	2.3	22	89	0	73	42	4	4	50	1.40
2523550--2523610	22	2.6	23	80	17	72	34	6	0	59	1.24
2524129--2524646	264	2.0	264	97	0	973	41	16	17	23	1.89
2524871--2524903	14	2.3	15	89	5	50	75	0	24	0	0.80
2527444--2527591	78	1.9	79	82	10	187	45	4	4	45	1.43
2527519--2527724	107	2.0	105	80	11	235	44	1	2	50	1.28
2527820--2527853	2	17.5	2	93	6	61	50	0	0	50	1.00
2531871--2531908	20	1.9	20	84	10	51	39	0	2	57	1.12
2531943--2531995	25	2.1	25	82	6	63	33	3	3	58	1.34
2535724--2535759	11	3.0	13	80	19	51	47	0	0	52	1.00
2539862--2540121	129	2.0	129	100	0	520	45	10	20	23	1.82
2544814--2544863	23	2.2	23	82	7	57	36	0	4	60	1.16
2547541--2547639	50	2.0	50	93	0	171	23	14	17	45	1.84
2548981--2549072	42	2.2	42	77	16	100	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2551218--2551254	2	18.5	2	100	0	74	51	0	0	48	1.00
2554220--2554274	20	2.8	20	80	5	58	32	12	12	41	1.81
2554292--2554345	20	2.7	20	100	0	108	35	14	11	38	1.82
2561101--2561151	17	3.0	17	80	5	59	29	3	0	66	1.09
2563172--2563197	11	2.4	11	100	0	52	30	0	0	69	0.89
2563528--2563552	11	2.3	11	100	0	50	52	0	0	48	1.00
2566175--2566223	19	2.6	19	84	9	57	26	2	0	71	0.97
2567593--2567632	9	4.3	9	82	17	55	65	0	0	35	0.93
2567597--2567642	19	2.5	19	85	3	58	63	2	0	34	1.07
2567806--2567849	22	2.0	21	87	12	63	59	0	0	40	0.98
2568225--2568276	2	26.0	2	96	0	95	50	1	0	48	1.12
2570267--2570304	3	12.7	3	94	0	67	71	0	0	28	0.87
2587051--2588727	279	6.0	279	100	0	3354	39	12	21	26	1.89
2590358--2590387	2	15.0	2	100	0	60	50	0	50	0	1.00
2590853--2590894	15	2.9	15	86	6	52	33	0	0	66	0.92
2590959--2590989	15	2.1	15	93	0	53	58	0	0	41	0.98
2590937--2590993	27	2.0	29	86	6	82	56	0	0	43	0.99
2592266--2592333	27	2.5	28	79	15	72	45	0	2	51	1.16
2592313--2592349	17	2.3	17	86	9	51	45	0	0	54	1.00
2592300--2592360	15	4.4	14	72	14	54	47	1	1	49	1.21
2592981--2593049	31	2.2	32	82	5	79	37	7	5	49	1.55
2593062--2593114	22	2.4	22	80	3	61	37	7	7	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2593136--2593191	20	2.6	23	77	16	73	28	1	8	60	1.37
2593136--2593196	21	2.9	21	72	18	54	27	1	8	62	1.33
2593358--2593382	6	4.2	6	100	0	50	48	0	0	52	1.00
2597553--2597628	14	5.9	13	73	20	54	67	0	1	31	0.99
2597560--2597618	25	2.4	25	83	13	77	67	0	1	30	1.00
2597565--2597628	14	4.8	14	78	16	64	65	0	1	32	1.02
2597552--2597621	36	1.9	36	88	5	106	67	0	1	31	1.00
2597810--2597856	9	4.7	10	82	12	53	82	0	17	0	0.66
2597809--2597882	12	5.6	12	72	24	51	78	0	20	1	0.83
2597808--2597859	4	13.0	4	80	11	54	80	0	19	0	0.71
2597921--2597963	23	1.9	22	85	4	59	34	0	0	65	0.93
2597973--2598015	12	3.7	11	84	9	50	44	0	0	55	0.99
2598075--2598102	4	7.0	4	100	0	56	25	0	0	75	0.81
2598586--2598632	18	2.6	19	75	21	55	31	6	0	61	1.21
2598621--2598671	21	2.5	19	79	14	57	33	3	5	56	1.42
2598641--2598673	17	1.9	17	88	11	50	30	6	9	54	1.56
2599226--2599292	16	4.6	15	75	13	61	79	1	19	0	0.82
2599227--2599292	27	2.5	27	82	7	82	80	1	18	0	0.79
2599314--2599419	38	2.9	35	80	14	101	30	0	1	67	1.01
2599315--2599408	37	2.7	34	79	14	93	30	0	2	67	1.03
2601007--2601088	21	3.8	22	71	22	59	37	0	1	60	1.04
2601050--2601121	27	2.5	30	80	10	80	34	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2601053--2601118	29	2.5	26	82	9	71	34	0	4	60	1.17
2602381--2602419	13	2.8	14	81	11	53	48	0	2	48	1.15
2602365--2602445	24	3.5	24	73	15	71	55	0	2	41	1.13
2602445--2602491	20	2.3	20	81	0	58	63	0	4	31	1.13
2602761--2602809	22	2.1	24	85	7	66	42	0	4	53	1.20
2606210--2606248	17	2.2	18	90	4	62	58	5	2	33	1.33
2606995--2607041	18	2.7	17	81	18	53	44	0	0	55	0.99
2608088--2608205	54	2.2	52	82	10	134	42	5	1	50	1.34
2608310--2608349	21	2.0	20	85	5	53	22	2	2	72	1.09
2610909--2610955	21	2.2	21	100	0	94	65	8	8	17	1.44
2611877--2611951	20	3.8	20	80	3	80	40	12	13	34	1.81
2611874--2611951	40	2.0	39	87	2	111	39	12	12	34	1.82
2612324--2612361	17	2.3	17	86	4	51	36	2	5	55	1.37
2612893--2612946	21	2.6	21	100	0	108	48	3	0	48	1.19
2612894--2612946	15	3.7	15	73	19	51	47	3	0	49	1.19
2614163--2614222	28	2.0	28	84	9	75	55	0	3	41	1.16
2614324--2614374	19	2.9	16	76	18	57	56	3	0	39	1.18
2618143--2618168	1	26.0	1	100	0	52	100	0	0	0	0.00
2627892--2627927	6	5.8	6	96	3	63	33	0	0	66	0.92
2628675--2628749	36	2.1	38	85	7	102	48	1	0	50	1.09
2628715--2628783	23	3.1	23	70	12	63	43	2	0	53	1.15
2628709--2628783	22	3.4	22	69	8	55	42	2	0	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628683--2628783	46	2.2	44	78	11	105	44	1	0	53	1.11
2629820--2629861	13	3.1	14	83	13	52	59	2	7	30	1.37
2630184--2630213	2	15.0	2	100	0	60	50	0	0	50	1.00
2631259--2631286	3	9.3	3	100	0	56	32	0	0	67	0.91
2632642--2632687	23	2.0	23	86	0	65	50	0	0	50	1.00
2632651--2632696	22	2.0	23	87	4	67	47	0	0	52	1.00
2636137--2636176	2	20.5	2	94	5	73	50	0	0	50	1.00
2637423--2637476	4	13.5	4	88	0	72	50	7	0	42	1.30
2637423--2637476	6	9.0	6	89	0	72	50	7	0	42	1.30
2637423--2637476	10	5.4	10	88	0	72	50	7	0	42	1.30
2637805--2637830	2	13.0	2	100	0	52	50	0	0	50	1.00
2641465--2641502	20	1.9	20	88	0	58	39	2	0	57	1.12
2641493--2641545	21	2.4	22	78	6	63	24	3	3	67	1.23
2642724--2642788	22	3.0	22	75	2	69	56	1	1	40	1.18
2647861--2647893	17	1.9	17	93	0	57	51	9	0	39	1.34
2649157--2649211	14	3.4	16	76	20	60	41	0	0	58	0.98
2649149--2649200	27	1.9	27	88	7	79	40	0	0	59	0.97
2658717--2658767	20	2.5	20	90	0	84	37	7	9	45	1.67
2665684--2665728	24	2.0	22	86	8	63	86	11	0	2	0.65
2666930--2667030	33	3.0	33	83	9	125	22	25	11	39	1.88
2666925--2667047	33	3.8	32	79	12	110	24	28	11	35	1.90
2667035--2667087	27	2.0	26	88	3	79	22	30	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2667055--2667574	61	8.4	61	78	12	384	20	31	13	34	1.91
2667124--2667324	88	2.3	88	86	3	296	20	31	13	33	1.92
2667212--2667458	60	4.0	61	81	7	212	20	31	12	35	1.90
2667055--2667607	27	17.8	33	72	17	359	20	31	13	34	1.91
2667588--2667683	30	3.3	29	85	7	124	34	31	16	17	1.93
2667823--2668057	39	5.6	39	74	16	218	26	26	20	26	1.99
2667754--2668109	87	4.0	87	91	2	552	26	25	19	27	1.99
2667845--2668105	48	5.8	48	74	16	263	26	26	20	27	1.99
2668106--2668626	27	16.9	33	74	16	381	20	32	13	34	1.91
2668106--2668577	61	7.8	60	77	15	354	20	31	13	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26