genome.fa.s66.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  5  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872193--872226	13	2.6	13	85	0	50	11	38	5	44	1.65
872763--872802	3	13.3	3	100	0	80	35	0	0	65	0.93
879287--879471	93	2.0	93	82	6	223	45	4	7	41	1.54
880107--880155	24	2.0	25	84	4	64	48	0	0	51	1.00
881305--881342	18	2.3	16	86	13	51	76	0	5	18	0.97
881722--881786	30	2.2	30	83	2	78	50	15	3	30	1.59
882872--882944	33	2.2	33	85	0	92	45	23	16	15	1.85
884162--884213	16	3.2	17	80	19	58	51	1	0	46	1.12
884206--884243	20	2.0	20	85	10	53	68	2	0	28	1.03
884188--884250	25	2.5	26	76	10	67	63	1	0	34	1.04
885512--885555	14	3.1	14	83	0	52	43	0	4	52	1.22
885719--885748	2	15.0	2	100	0	60	50	0	0	50	1.00
887424--887451	1	28.0	1	100	0	56	0	0	0	100	0.00
890042--890070	10	2.7	11	89	10	51	58	0	0	41	0.98
890039--890086	23	2.2	22	82	14	55	58	0	0	41	0.98
890343--890382	21	1.9	21	89	0	62	60	0	2	37	1.11
890368--890410	17	2.5	17	76	0	50	76	2	2	18	1.00
893502--893526	2	12.5	2	100	0	50	48	0	0	52	1.00
894240--894296	12	4.8	12	80	4	53	75	3	21	0	0.95
895563--895608	24	1.9	24	86	8	67	54	2	15	28	1.53
895563--895615	24	2.3	24	83	6	65	52	1	13	32	1.51
902126--902163	19	2.0	19	100	0	76	26	10	15	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910365--910408	22	2.0	22	100	0	88	36	13	9	40	1.76
914084--914156	2	36.5	2	100	0	146	0	50	0	49	1.00
916072--916098	2	13.5	2	100	0	54	51	0	0	48	1.00
917207--917239	2	16.5	2	100	0	66	51	0	0	48	1.00
920751--920776	2	13.0	2	100	0	52	50	0	0	50	1.00
921316--921350	15	2.2	17	90	10	56	48	0	20	31	1.50
921825--921891	31	2.2	31	97	0	125	40	2	19	37	1.67
925086--925227	75	1.9	76	86	1	205	41	14	9	33	1.79
928490--928514	2	12.5	2	100	0	50	0	52	0	48	1.00
928853--928924	32	2.2	33	80	11	87	45	0	0	54	0.99
928864--928917	19	2.8	19	81	16	58	48	0	0	51	1.00
935968--936018	23	2.4	21	81	18	61	66	0	0	33	0.92
936008--936040	15	2.4	14	90	10	50	57	0	0	42	0.98
936008--936054	13	3.6	13	76	21	53	55	0	0	44	0.99
937326--937378	20	2.7	19	83	11	63	56	0	0	43	0.99
943018--943062	22	2.1	21	83	4	54	53	2	2	42	1.25
943048--943120	16	4.6	16	87	0	110	57	0	2	39	1.13
943039--943120	32	2.6	32	86	0	110	57	0	2	40	1.12
943734--943844	5	23.0	5	71	14	74	40	0	0	58	1.04
943734--943844	15	7.0	16	72	22	83	40	0	0	58	1.04
943734--943844	32	3.5	32	72	21	99	40	0	0	58	1.04
943802--943858	14	3.8	14	74	17	51	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943795--943875	32	2.5	32	89	2	117	43	1	0	55	1.07
943962--944015	18	2.8	19	83	11	65	64	0	0	35	0.94
944519--944546	3	9.3	3	100	0	56	67	0	0	32	0.91
944963--944992	13	2.3	13	94	0	51	63	3	0	33	1.11
944936--944990	23	2.4	23	77	14	60	56	3	0	40	1.17
946124--946160	13	2.6	14	91	8	58	21	0	2	75	0.92
946219--946255	18	2.1	18	89	0	56	64	8	0	27	1.21
946680--946722	14	3.1	15	80	12	56	4	9	2	83	0.87
948329--948464	47	2.9	47	94	0	236	30	19	16	33	1.94
950124--950171	25	1.9	25	87	8	71	47	0	0	52	1.00
950945--951015	19	3.6	19	70	12	54	45	0	0	54	0.99
951009--951040	15	2.1	16	94	5	57	50	0	0	50	1.00
953381--953429	19	2.5	20	69	24	50	38	4	6	51	1.46
958384--958408	3	8.3	3	100	0	50	32	0	36	32	1.58
959663--959687	2	12.5	2	100	0	50	52	0	0	48	1.00
960857--960899	16	2.5	17	88	7	61	53	2	2	41	1.26
960903--960949	16	3.0	16	76	14	53	51	0	0	48	1.00
961028--961058	2	15.5	2	100	0	62	48	0	0	51	1.00
963661--963707	19	2.4	20	75	3	51	44	2	0	53	1.12
964720--964745	12	2.2	12	100	0	52	26	15	0	57	1.38
966795--966824	13	2.3	13	94	0	51	60	3	0	36	1.14
966974--967002	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967798--967873	32	2.4	32	93	4	129	53	2	9	34	1.46
969546--969577	2	16.0	2	100	0	64	50	0	0	50	1.00
973796--973852	24	2.4	23	77	11	62	45	0	1	52	1.11
973823--973860	18	2.1	19	85	5	51	55	0	0	44	0.99
974548--974605	18	3.4	18	83	6	68	41	1	0	56	1.09
974555--974611	18	3.2	17	83	11	62	38	3	0	57	1.16
976191--976236	2	23.0	2	95	0	83	50	0	2	47	1.13
977908--977973	5	13.8	5	73	10	50	56	0	0	43	0.99
977885--977937	21	2.3	24	84	12	67	58	0	5	35	1.22
977943--977972	13	2.2	14	94	5	53	50	0	0	50	1.00
977918--977999	32	2.6	30	79	12	92	54	1	0	43	1.07
978845--978876	2	16.0	2	100	0	64	50	0	0	50	1.00
978935--978960	3	8.7	3	100	0	52	0	34	65	0	0.93
981259--981307	12	4.2	12	80	15	50	40	0	0	59	0.98
981274--981325	22	2.3	23	80	6	61	44	0	0	55	0.99
991668--991696	4	7.2	4	100	0	58	24	0	0	75	0.80
994589--994661	28	2.6	29	81	14	82	58	0	4	36	1.17
994615--994657	23	1.9	22	90	4	68	62	0	2	34	1.08
994654--994735	17	4.5	17	66	31	53	54	0	0	45	0.99
994609--994664	5	11.8	5	76	19	50	60	0	1	37	1.07
994649--994762	32	3.6	31	75	16	110	56	0	0	43	0.99
997341--997493	71	2.1	72	93	6	265	27	5	16	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002020--1002080	11	5.5	11	75	13	54	55	1	0	42	1.09
1002012--1002059	23	2.1	22	88	3	69	58	2	0	39	1.10
1002010--1002081	21	3.5	21	77	22	82	58	1	0	40	1.07
1004292--1004320	14	2.0	15	93	6	51	48	0	0	51	1.00
1005020--1005202	34	5.4	34	87	1	253	26	7	26	39	1.83
1005575--1005759	34	5.5	34	87	1	257	26	7	25	40	1.82
1010089--1010153	18	3.6	18	75	8	60	47	0	0	52	1.00
1010711--1010736	2	13.0	2	100	0	52	50	0	50	0	1.00
1017742--1017809	16	4.3	15	74	17	66	61	1	1	35	1.14
1018725--1019112	199	2.0	195	93	2	668	35	11	12	40	1.80
1022463--1022519	26	2.2	25	84	9	71	47	1	0	50	1.11
1024163--1024201	20	1.9	21	94	5	71	51	0	2	46	1.14
1025321--1025386	28	2.2	30	79	15	75	56	1	0	42	1.08
1025793--1025824	2	16.5	2	93	6	57	50	0	0	50	1.00
1026037--1026070	4	8.5	4	87	12	52	50	0	0	50	1.00
1031419--1031456	16	2.3	17	86	9	60	36	0	2	60	1.11
1031917--1031941	2	12.5	2	100	0	50	48	0	0	52	1.00
1032757--1032794	20	1.9	20	88	0	58	57	0	2	39	1.12
1041296--1041336	21	2.0	21	85	9	57	26	2	2	68	1.15
1042046--1042094	18	2.5	19	80	12	55	46	0	2	51	1.12
1042065--1042113	20	2.6	18	81	12	53	53	0	2	44	1.12
1042172--1042220	18	2.7	18	80	0	62	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042184--1042223	19	2.2	18	86	4	53	45	0	0	55	0.99
1042171--1042255	12	7.1	12	74	12	68	40	3	2	54	1.31
1043249--1043322	35	2.1	35	78	9	80	45	0	2	51	1.15
1043258--1043328	35	2.1	34	84	7	90	42	0	1	56	1.08
1049970--1050060	38	2.4	38	81	7	96	45	0	0	54	0.99
1051552--1051582	16	1.9	16	93	0	53	19	19	6	54	1.65
1054392--1054425	3	11.3	3	100	0	68	0	32	0	67	0.91
1060798--1060842	20	2.2	21	84	4	56	53	0	2	44	1.13
1060979--1061013	17	2.1	17	89	10	54	68	0	0	31	0.90
1060979--1061025	16	2.8	18	81	15	57	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26