genome.fa.s66.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  21  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3602731--3602786	19	2.8	19	71	17	51	32	1	0	66	1.03
3602908--3602955	25	1.9	25	83	8	62	35	0	0	64	0.94
3603843--3603882	21	1.9	21	89	0	62	62	0	5	32	1.17
3604602--3604634	3	11.0	3	93	0	57	33	3	33	30	1.73
3604897--3604927	2	15.5	2	93	0	53	48	0	3	48	1.17
3607374--3607453	26	3.0	27	77	20	87	51	0	0	48	1.00
3607848--3607876	2	14.5	2	100	0	58	51	0	0	48	1.00
3608247--3608307	30	2.1	30	87	9	90	37	8	1	52	1.41
3608258--3608333	30	2.6	29	81	10	91	46	6	0	47	1.28
3610074--3610108	2	17.5	2	100	0	70	48	0	0	51	1.00
3611756--3611788	2	16.5	2	100	0	66	51	0	0	48	1.00
3612293--3612416	59	2.1	58	89	2	187	42	4	3	50	1.37
3613981--3614249	79	3.4	79	81	4	328	34	15	23	26	1.94
3622176--3622216	20	2.0	20	90	0	64	26	2	4	65	1.25
3624950--3624984	12	2.9	12	95	0	61	40	2	40	17	1.64
3633431--3633492	22	2.9	21	85	7	63	40	3	27	29	1.72
3633438--3633486	22	2.2	23	85	10	75	40	2	28	28	1.68
3633445--3633492	22	2.2	21	88	3	69	43	2	25	29	1.66
3634018--3634084	20	3.7	20	70	25	76	26	10	14	47	1.77
3634037--3634096	13	5.1	13	69	22	51	30	11	13	45	1.79
3634018--3634096	33	2.4	33	93	0	140	29	11	13	45	1.79
3634080--3634136	19	2.9	19	86	2	78	33	15	15	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3636477--3636518	19	2.3	19	87	4	59	45	0	0	54	0.99
3637383--3637432	26	2.0	25	92	4	82	62	4	0	34	1.14
3643544--3643583	20	2.0	20	90	0	62	50	10	7	32	1.64
3645686--3645781	26	3.6	26	75	10	95	21	15	34	28	1.94
3648217--3648298	20	3.6	20	72	27	74	45	12	13	29	1.80
3648114--3648301	51	3.7	50	88	3	243	41	12	17	28	1.86
3653823--3653997	76	2.3	75	88	3	262	28	20	12	39	1.88
3656402--3656441	6	6.7	6	91	0	53	25	2	5	67	1.23
3659845--3659887	20	2.2	20	86	0	59	55	0	2	41	1.12
3661109--3661209	32	2.9	33	80	15	116	54	0	0	45	0.99
3661133--3661182	16	3.2	16	79	20	61	52	0	0	48	1.00
3661174--3661210	11	3.2	12	85	14	60	59	0	0	40	0.97
3665132--3665179	2	24.0	2	95	0	87	0	47	0	52	1.00
3669463--3669497	2	17.5	2	87	0	52	51	2	0	45	1.16
3669932--3669997	23	2.8	23	82	8	80	57	1	3	37	1.23
3671617--3671643	7	3.9	7	100	0	54	14	0	0	85	0.61
3673723--3673767	22	2.0	22	82	8	54	40	13	17	28	1.88
3673771--3673817	2	23.5	2	100	0	94	48	0	0	51	1.00
3676537--3676578	21	1.9	22	85	9	59	45	2	0	52	1.13
3686016--3686040	2	12.5	2	100	0	50	48	0	0	52	1.00
3686402--3686464	32	1.9	34	87	6	94	36	0	0	63	0.95
3686547--3686598	14	3.4	14	78	21	52	30	0	1	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3688249--3688429	91	2.0	91	96	0	335	25	9	14	49	1.74
3688361--3688533	58	3.0	58	82	4	215	29	8	14	47	1.72
3689075--3689431	49	7.5	47	79	8	183	30	10	14	44	1.79
3689172--3689432	92	2.8	93	80	9	271	29	9	15	46	1.76
3689112--3689431	141	2.2	142	81	7	346	30	10	15	44	1.79
3689108--3689432	48	6.8	48	79	7	259	30	10	15	44	1.79
3691279--3691343	22	3.0	22	77	8	71	4	23	0	72	1.03
3691787--3691879	26	3.5	26	75	10	89	50	8	9	31	1.65
3691936--3692006	27	2.6	27	86	4	99	46	2	8	42	1.49
3693547--3693602	21	2.7	21	97	0	103	35	14	14	35	1.86
3693633--3693682	20	2.5	20	86	0	64	38	18	14	30	1.89
3695527--3695571	13	3.5	13	90	0	72	33	17	15	33	1.92
3695617--3695672	19	2.8	20	89	5	87	35	16	16	32	1.90
3696605--3696676	33	2.2	33	92	2	119	34	19	23	22	1.96
3698169--3698229	33	1.9	33	86	6	90	39	14	16	29	1.88
3702079--3702135	20	2.9	21	87	10	84	24	12	17	45	1.83
3702182--3702237	20	2.8	20	89	5	78	28	17	16	37	1.91
3704443--3704468	13	2.0	13	100	0	52	30	15	15	38	1.88
3704507--3704583	21	3.8	19	73	13	73	28	15	11	44	1.82
3704528--3704600	20	3.6	20	77	3	83	32	16	12	38	1.86
3704507--3704600	41	2.3	41	94	0	161	30	17	11	40	1.85
3709089--3709285	100	2.0	100	89	2	306	25	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3710722--3710832	40	2.8	39	84	5	141	44	17	7	31	1.76
3712300--3712351	19	2.7	19	84	3	68	40	13	15	30	1.86
3712278--3712351	20	3.8	20	80	8	71	40	13	13	32	1.84
3714881--3714917	13	2.8	13	91	0	56	40	16	10	32	1.83
3716337--3716367	16	1.9	16	93	0	53	35	9	0	54	1.33
3716934--3717348	209	2.0	209	96	0	758	22	19	14	43	1.88
3719205--3719253	24	2.0	24	96	0	89	16	14	8	61	1.56
3719648--3719682	15	2.3	15	95	0	61	28	28	0	42	1.56
3727210--3727246	19	2.0	19	89	5	58	32	32	0	35	1.58
3728428--3728460	14	2.4	14	90	5	50	24	0	3	72	0.98
3728437--3728484	19	2.4	21	73	13	57	29	2	4	64	1.23
3734514--3734546	13	2.4	14	90	5	50	42	0	6	51	1.26
3737792--3737853	31	2.0	32	87	3	90	66	4	0	29	1.12
3737803--3737856	21	2.5	22	85	5	76	70	3	0	25	1.04
3737802--3737854	10	5.1	10	77	8	61	71	3	0	24	1.02
3740969--3741018	17	3.1	16	73	15	50	60	6	18	16	1.55
3745364--3745964	110	5.5	110	81	3	579	30	17	17	33	1.94
3746211--3746242	14	2.2	15	94	5	57	75	6	0	18	1.01
3746648--3746681	11	2.9	12	86	8	52	0	26	0	73	0.83
3746663--3746706	4	11.8	4	85	9	58	0	25	0	75	0.81
3746646--3746702	10	5.6	10	78	15	55	0	24	0	75	0.80
3746663--3746705	14	2.9	15	90	10	63	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3746663--3746711	18	2.6	19	87	9	73	0	26	0	73	0.83
3746663--3746705	11	3.9	11	82	17	54	0	25	0	74	0.82
3747297--3747326	15	2.0	15	93	0	51	6	0	10	83	0.81
3747600--3748318	28	26.8	28	78	6	606	23	16	26	33	1.96
3747600--3748305	54	13.2	54	77	10	539	22	16	27	33	1.95
3747600--3748318	82	8.9	82	80	7	633	23	16	26	33	1.96
3747965--3748032	23	3.0	23	93	0	109	22	16	26	35	1.94
3749590--3749614	9	2.8	9	100	0	50	0	8	8	84	0.79
3749588--3749624	20	1.9	20	94	5	67	0	5	8	86	0.70
3761240--3761486	109	2.3	108	80	4	282	33	16	16	33	1.92
3762191--3762222	4	8.2	4	93	6	57	0	25	0	75	0.81
3762183--3762224	15	2.8	15	96	0	75	0	28	0	71	0.86
3762183--3762229	15	3.2	15	90	3	60	0	29	0	70	0.88
3763638--3763728	21	4.6	20	74	10	87	38	14	16	30	1.88
3769349--3769378	13	2.3	13	94	0	51	36	16	10	36	1.82
3769332--3769401	33	2.1	32	87	10	97	32	14	17	35	1.90
3775584--3775608	13	1.9	13	100	0	50	36	16	16	32	1.90
3778128--3778181	20	2.8	20	88	2	74	29	14	16	38	1.89
3778128--3778182	19	2.8	19	86	5	74	30	14	16	38	1.89
3778227--3778256	13	2.3	13	94	0	51	36	16	10	36	1.82
3778213--3778279	33	2.0	32	88	11	100	35	14	14	34	1.88
3783829--3783965	73	1.9	73	96	0	256	29	23	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3791134--3791165	12	2.7	12	95	0	55	31	9	28	31	1.88
3791532--3791644	20	5.0	23	75	20	105	39	2	24	32	1.69
3791531--3791644	44	2.5	44	84	6	158	40	2	24	32	1.69
3792306--3792330	13	1.9	13	100	0	50	32	16	16	36	1.90
3792285--3792348	33	2.0	33	90	3	103	31	15	15	37	1.89
3794777--3794851	20	3.8	19	82	7	96	32	12	13	42	1.80
3803235--3803738	110	4.6	111	83	4	628	25	30	13	30	1.94
3803209--3804323	137	7.9	139	81	7	675	26	30	16	26	1.96
3803225--3804604	86	16.2	86	81	7	1003	27	30	16	25	1.97
3803290--3804600	28	46.0	28	81	7	948	27	30	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26