genome.fa.s66.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  11  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827280--1827304	6	4.2	6	100	0	50	84	0	16	0	0.63
1833482--1833509	2	14.0	2	100	0	56	50	0	0	50	1.00
1834539--1834586	15	3.2	14	77	13	51	39	0	0	60	0.97
1835426--1835484	28	2.1	28	81	9	68	62	1	0	35	1.05
1837079--1837174	33	2.9	33	93	1	158	43	12	14	29	1.82
1839113--1839152	21	2.0	20	90	5	62	60	5	0	35	1.19
1845756--1845790	18	1.9	18	88	0	52	51	14	2	31	1.57
1845990--1846021	2	16.0	2	93	0	55	50	3	0	46	1.17
1847137--1847178	13	3.4	13	90	6	61	54	2	4	38	1.34
1848124--1848155	2	16.0	2	100	0	64	50	0	0	50	1.00
1848472--1848497	2	13.0	2	100	0	52	50	0	0	50	1.00
1848737--1848778	2	21.0	2	100	0	84	50	0	0	50	1.00
1849366--1849400	2	17.5	2	87	0	52	48	5	0	45	1.26
1849366--1849400	12	2.9	12	95	0	61	48	5	0	45	1.26
1851707--1851737	16	1.9	16	93	0	53	80	0	3	16	0.83
1859045--1859086	21	2.0	20	86	4	57	42	0	0	57	0.99
1859000--1859122	48	2.5	47	77	16	133	48	0	0	51	1.00
1859427--1859452	7	3.7	7	100	0	52	26	0	0	73	0.84
1859535--1859593	18	3.1	18	87	7	82	45	0	0	54	0.99
1862238--1862289	21	2.5	21	81	6	61	26	63	3	5	1.34
1867843--1867997	42	3.6	42	80	6	159	32	23	23	20	1.98
1867878--1867997	45	2.7	45	85	3	147	32	24	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1868687--1868720	3	11.3	3	100	0	68	32	0	32	35	1.58
1869744--1869791	25	2.0	24	84	11	64	58	0	0	41	0.98
1869752--1869801	25	2.0	25	84	3	66	60	0	0	40	0.97
1871680--1871748	34	2.0	34	97	0	129	53	8	13	24	1.67
1872433--1872470	2	19.0	2	94	0	67	47	0	2	50	1.15
1874011--1874075	32	2.2	32	83	10	84	40	0	0	60	0.97
1874023--1874079	18	3.1	18	76	2	60	43	0	0	56	0.99
1877197--1877231	2	18.0	2	91	5	54	51	0	2	45	1.16
1881649--1881709	30	2.0	30	96	0	113	40	19	13	26	1.88
1883381--1883411	13	2.5	13	94	5	55	38	0	0	61	0.96
1884806--1884854	25	2.0	25	88	8	73	42	0	6	51	1.27
1885171--1885197	2	13.5	2	100	0	54	51	0	0	48	1.00
1885828--1885875	26	1.9	25	83	8	62	4	10	6	79	1.05
1888932--1889011	33	2.8	26	72	27	72	41	0	1	57	1.07
1888928--1888995	16	4.2	17	76	14	72	41	0	1	57	1.08
1888938--1889002	32	2.0	33	87	3	96	44	0	1	53	1.09
1888998--1889055	22	2.9	19	72	20	55	29	5	0	65	1.14
1889002--1889045	22	2.0	23	90	4	72	27	6	0	65	1.17
1890731--1890760	2	15.5	2	93	6	53	50	50	0	0	1.00
1892310--1892363	17	3.3	17	69	25	53	57	0	1	40	1.09
1893863--1893920	8	7.5	8	77	14	59	53	0	1	44	1.10
1893863--1893919	15	3.7	15	84	11	71	54	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1895970--1896013	19	2.4	19	84	3	63	56	0	0	43	0.99
1896027--1896061	17	2.0	17	88	5	52	54	0	0	45	0.99
1896754--1896807	25	2.1	26	82	3	65	31	1	1	64	1.14
1897092--1897147	17	3.2	17	82	12	69	53	0	0	46	1.00
1897124--1897158	18	1.9	18	88	0	52	57	2	0	40	1.14
1897116--1897193	33	2.4	33	79	12	88	56	3	1	38	1.26
1897239--1897290	24	2.3	23	83	9	70	36	1	0	61	1.07
1897476--1897500	10	2.5	10	100	0	50	72	0	0	28	0.86
1899318--1899351	9	3.7	9	92	4	50	70	0	0	29	0.87
1899961--1900019	26	2.3	26	82	8	68	42	0	0	57	0.98
1899969--1900019	24	2.1	25	85	10	70	41	0	0	58	0.98
1902889--1902933	17	2.9	15	87	12	72	37	0	2	60	1.09
1904367--1904412	23	2.0	23	86	0	65	58	0	6	34	1.24
1915391--1915448	25	2.2	26	81	9	73	62	12	1	24	1.39
1916134--1916159	10	2.6	10	100	0	52	92	0	7	0	0.39
1916285--1916344	26	2.3	27	82	5	79	50	0	3	46	1.18
1916564--1916610	20	2.3	20	85	0	58	48	0	4	46	1.21
1916807--1916851	21	2.1	22	88	12	67	66	6	2	24	1.27
1919903--1919937	2	17.5	2	100	0	70	51	0	0	48	1.00
1920307--1920390	32	2.7	32	82	8	95	54	0	1	44	1.07
1920913--1920954	18	2.4	19	80	15	54	33	0	0	66	0.92
1921083--1921151	27	2.5	26	79	9	75	47	1	0	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1921514--1921547	16	2.1	16	100	0	68	76	0	0	23	0.79
1921514--1921549	9	4.2	9	86	13	58	77	0	0	22	0.76
1921518--1921556	16	2.4	16	91	0	60	84	0	0	15	0.62
1922230--1922265	2	18.5	2	94	5	65	50	0	0	50	1.00
1925114--1925145	2	16.0	2	100	0	64	50	0	0	50	1.00
1927397--1927429	15	2.1	17	88	11	52	24	3	12	60	1.46
1931731--1931765	18	1.9	18	94	0	61	28	14	28	28	1.95
1936116--1936253	69	2.0	69	89	0	213	23	14	27	34	1.94
1938246--1938443	97	2.0	98	96	1	362	27	9	23	39	1.85
1938594--1938631	6	6.2	6	82	17	51	18	0	2	78	0.86
1938594--1938631	11	3.1	12	85	14	51	18	0	2	78	0.86
1938594--1938631	19	2.1	18	90	9	60	18	0	2	78	0.86
1944278--1944317	15	2.7	15	88	0	62	27	52	7	12	1.66
1944776--1945019	75	3.3	75	88	0	353	33	8	18	39	1.81
1945902--1946218	105	3.0	105	95	0	580	30	17	23	28	1.97
1951169--1951211	6	7.2	6	87	10	61	37	0	0	62	0.95
1951104--1951211	13	8.9	12	70	16	62	37	0	1	60	1.08
1951167--1951208	17	2.4	18	96	4	77	40	0	0	59	0.97
1951176--1951292	33	3.5	35	78	17	106	50	0	0	48	1.06
1951238--1951292	19	2.8	19	75	20	60	58	0	0	41	0.98
1953390--1953570	34	5.4	34	85	0	220	40	25	7	26	1.81
1957722--1957906	34	5.5	34	77	5	169	42	21	5	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958472--1958543	23	3.2	23	76	7	67	38	1	1	58	1.15
1958501--1958566	15	4.1	16	76	20	59	43	0	0	56	0.99
1958501--1958544	7	6.0	7	82	10	52	43	0	0	56	0.99
1958509--1958570	18	3.7	18	73	18	62	45	0	0	54	0.99
1958537--1958578	22	2.1	19	86	13	57	45	2	0	52	1.13
1963008--1963047	15	2.7	15	88	0	62	27	52	7	12	1.66
1963506--1963749	75	3.3	75	88	0	353	33	8	18	39	1.81
1964631--1965052	105	4.0	105	97	0	772	30	17	23	27	1.97
1969941--1970067	6	20.5	6	75	13	89	38	0	0	59	1.08
1969921--1970008	43	2.0	44	85	12	119	34	0	1	64	1.01
1969911--1970058	44	3.3	46	75	12	121	38	0	0	60	1.07
1969983--1970101	18	6.6	18	73	17	68	47	0	0	52	1.06
1972205--1972387	34	5.4	34	84	3	217	40	25	7	26	1.81
1972205--1972387	102	1.8	101	86	3	269	40	25	7	26	1.81
1976535--1976719	34	5.5	34	77	3	176	41	21	5	31	1.77
1977289--1977360	23	3.2	23	76	7	67	38	1	1	58	1.15
1977318--1977383	15	4.1	16	76	20	59	43	0	0	56	0.99
1977318--1977361	7	6.0	7	82	10	52	43	0	0	56	0.99
1977326--1977387	18	3.7	18	73	18	62	45	0	0	54	0.99
1977354--1977395	22	2.1	19	86	13	57	45	2	0	52	1.13
1978752--1978821	24	3.0	24	75	21	76	54	0	0	45	0.99
1980070--1980096	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981261--1981295	17	2.1	17	94	0	61	37	0	2	60	1.12
1981401--1981463	28	2.2	28	80	0	72	41	4	3	50	1.39
1981876--1981907	14	2.4	14	94	5	57	34	0	0	65	0.93
1982730--1982858	66	2.0	64	85	8	172	30	16	17	35	1.92
1983030--1983058	14	2.0	15	93	6	51	31	0	0	68	0.89
1983025--1983124	48	2.2	46	84	10	125	38	0	1	61	1.03
1988879--1988912	17	1.9	18	94	5	61	32	0	0	67	0.91
1988879--1988930	17	3.2	17	82	15	58	34	0	0	65	0.93
1989616--1989652	17	2.2	17	95	0	65	51	0	2	45	1.15
1990648--1990717	4	17.5	4	89	0	77	50	0	8	41	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26