genome.fa.s66.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  22  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3805490--3805547	20	2.9	20	94	0	98	31	17	8	43	1.79
3805560--3805590	16	1.9	16	100	0	62	48	12	12	25	1.77
3806854--3806879	13	2.0	13	100	0	52	38	15	15	30	1.88
3809098--3809142	21	2.1	21	84	8	56	53	4	20	22	1.63
3810946--3810976	15	2.1	15	93	0	53	48	16	22	12	1.80
3813033--3813105	20	3.6	20	81	3	101	35	13	19	31	1.91
3813033--3813127	41	2.3	42	96	1	174	40	12	17	29	1.87
3813166--3813191	13	2.0	13	100	0	52	38	15	15	30	1.88
3817255--3817293	15	2.6	15	91	0	60	51	15	20	12	1.76
3819299--3819376	20	3.6	21	73	15	70	25	12	16	44	1.83
3819363--3819401	13	3.0	13	96	0	69	30	17	15	35	1.91
3821208--3821253	16	2.8	16	93	6	74	28	2	39	30	1.69
3821860--3821932	20	3.6	20	81	3	101	35	13	19	31	1.91
3821860--3821954	41	2.3	42	96	1	174	40	12	17	29	1.87
3821993--3822018	13	2.0	13	100	0	52	38	15	15	30	1.88
3823213--3823258	21	2.2	20	81	11	58	32	19	4	43	1.71
3825637--3825662	13	2.0	13	100	0	52	38	15	15	30	1.88
3832943--3833268	175	1.9	173	79	8	376	31	23	11	33	1.90
3835920--3836092	70	2.5	71	83	4	201	26	15	15	42	1.86
3835975--3836076	35	2.9	35	83	1	123	25	15	16	42	1.88
3836402--3836632	66	3.5	66	85	2	304	36	20	21	21	1.95
3836403--3836662	131	2.0	131	80	7	296	36	20	20	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3839054--3839492	81	5.4	81	77	5	393	33	23	8	34	1.86
3838897--3839339	160	2.8	157	81	4	482	33	22	8	35	1.84
3843906--3843984	35	2.3	35	86	2	106	30	16	18	34	1.94
3843892--3843995	34	3.0	35	82	2	120	28	17	18	35	1.93
3843889--3843999	35	3.2	35	77	8	102	28	17	17	36	1.92
3850429--3850455	2	13.5	2	100	0	54	48	0	0	51	1.00
3857865--3859122	55	23.0	54	82	3	1297	24	31	13	29	1.94
3857842--3859728	28	68.4	28	82	6	1362	26	31	14	27	1.95
3857868--3859125	27	46.1	27	83	3	1410	24	31	13	29	1.94
3859126--3860013	28	31.1	28	84	5	973	30	29	17	23	1.97
3861797--3861839	2	21.5	2	100	0	86	48	0	0	51	1.00
3862473--3862499	13	2.1	13	100	0	54	29	14	14	40	1.86
3862454--3862518	33	2.0	32	87	3	94	30	15	13	40	1.86
3862483--3862540	19	3.1	18	83	11	80	36	15	15	32	1.89
3862484--3862539	20	2.8	20	86	7	80	33	16	16	33	1.91
3872135--3872162	2	14.0	2	100	0	56	50	0	0	50	1.00
3884874--3884913	12	3.0	14	78	14	57	35	0	2	62	1.09
3884874--3884911	13	2.9	13	84	11	51	34	0	2	63	1.09
3884987--3885041	21	2.6	22	82	8	69	61	0	1	36	1.06
3884970--3885043	20	3.7	19	77	8	76	60	2	1	35	1.19
3888282--3888322	21	1.9	22	90	5	66	48	2	0	48	1.14
3888257--3888309	18	2.9	17	74	20	54	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3895195--3895229	16	2.1	17	89	5	54	37	0	0	62	0.95
3896052--3896126	19	3.8	19	77	10	71	32	17	16	34	1.92
3896092--3896129	21	1.9	20	89	10	60	39	13	15	31	1.86
3902389--3902427	13	3.0	13	92	0	69	30	17	15	35	1.91
3904274--3904343	22	3.2	22	68	11	72	38	1	34	25	1.65
3904325--3904358	15	2.1	17	89	10	54	35	0	35	29	1.58
3904897--3904923	13	2.1	13	100	0	54	29	7	14	48	1.71
3904973--3905025	20	2.7	19	88	11	72	37	13	18	30	1.89
3916387--3916478	48	1.9	48	93	0	157	57	3	10	28	1.48
3924672--3924783	20	5.6	19	72	8	98	42	15	12	29	1.83
3924677--3924783	40	2.7	40	92	0	178	42	15	12	28	1.83
3925153--3925190	17	2.2	17	86	9	51	65	7	2	23	1.32
3925975--3926013	20	2.0	19	95	5	69	30	15	15	38	1.88
3930374--3930401	13	2.2	13	100	0	56	39	17	14	28	1.89
3930332--3930421	33	2.8	34	77	12	100	41	14	14	30	1.85
3933631--3933695	33	2.0	33	93	0	112	44	10	10	33	1.74
3937778--3937802	13	1.9	13	100	0	50	56	0	24	20	1.43
3943021--3943097	20	3.8	20	77	6	73	42	10	12	33	1.77
3943962--3944004	22	2.0	22	90	0	68	37	9	0	53	1.33
3943968--3944015	22	2.2	22	84	0	60	33	12	2	52	1.51
3953407--3953437	2	15.5	2	100	0	62	48	0	51	0	1.00
3955938--3955964	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3957874--3957943	14	5.0	14	71	22	58	45	5	4	44	1.47
3957860--3957950	42	2.2	42	96	3	168	43	4	4	47	1.43
3960298--3960363	13	4.6	13	71	20	51	63	1	1	33	1.13
3961756--3961785	2	15.0	2	100	0	60	50	0	0	50	1.00
3965950--3966029	10	7.7	10	76	13	63	17	7	1	73	1.12
3965944--3965989	10	3.8	13	80	19	55	15	8	0	76	1.02
3965951--3965996	23	2.0	22	87	4	65	13	6	2	78	1.04
3966316--3966390	27	3.0	26	75	14	68	24	0	6	69	1.12
3969903--3970433	89	6.0	89	86	1	627	31	15	15	37	1.89
3969903--3970433	177	3.0	177	83	1	661	31	15	15	37	1.89
3969903--3970433	266	2.0	268	85	2	712	31	15	15	37	1.89
3972494--3972556	2	35.0	2	76	20	68	46	0	0	53	1.00
3972490--3972555	19	3.2	21	83	12	100	43	0	0	56	0.99
3972494--3972556	13	4.6	14	83	13	87	46	0	0	53	1.00
3972494--3972556	22	2.6	26	78	21	82	46	0	0	53	1.00
3972553--3972757	105	1.9	104	84	1	257	32	19	17	31	1.95
3975554--3976291	79	9.3	79	79	5	658	27	21	13	37	1.91
3975554--3976289	159	4.7	157	79	7	636	27	21	13	37	1.91
3977791--3977857	18	3.6	19	92	6	102	1	25	0	73	0.92
3977797--3977858	14	4.8	13	86	11	76	1	27	0	70	0.96
3977798--3977864	15	4.3	15	80	14	82	1	28	0	70	0.96
3977791--3977857	4	17.0	4	82	14	86	1	25	0	73	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3978589--3978627	16	2.4	16	82	0	51	74	12	7	5	1.20
3978835--3978908	38	1.9	38	86	5	105	54	27	4	14	1.59
3978852--3978911	26	2.4	25	80	2	66	56	26	1	15	1.48
3980426--3980478	20	2.7	20	87	0	70	41	9	16	32	1.81
3981449--3981507	28	2.1	28	96	0	109	47	11	10	30	1.73
3982830--3983235	204	2.0	203	93	0	695	29	18	15	36	1.92
3989805--3989861	19	2.9	20	79	10	73	43	17	12	26	1.84
3996018--3996055	13	2.9	13	96	0	67	34	18	15	31	1.92
3997666--3997709	23	2.0	21	82	8	52	15	9	15	59	1.61
3998615--3998640	13	2.0	13	100	0	52	38	15	15	30	1.88
3998597--3998661	32	2.0	32	87	6	94	41	16	13	27	1.87
4002233--4002257	13	1.9	13	100	0	50	36	16	16	32	1.90
4002307--4002421	13	10.1	12	70	29	92	35	17	12	34	1.87
4002308--4002421	34	3.4	34	100	0	228	35	17	12	35	1.87
4002430--4002560	52	2.5	52	88	4	210	34	17	18	29	1.94
4004691--4004744	27	2.1	26	86	10	76	24	38	16	20	1.92
4008545--4008592	24	1.9	25	83	8	62	31	10	4	54	1.53
4017622--4017762	52	2.7	52	91	2	230	31	17	17	33	1.94
4017751--4017775	13	1.9	13	100	0	50	36	16	16	32	1.90
4017840--4017864	13	1.9	13	100	0	50	32	16	16	36	1.90
4017818--4017884	33	2.0	33	88	0	98	40	13	11	34	1.81
4017922--4017963	21	2.0	21	90	0	66	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4020028--4020075	24	1.9	25	83	8	62	31	10	4	54	1.53
4021583--4021620	13	2.9	13	96	0	67	34	18	15	31	1.92
4023231--4023274	23	2.0	21	82	8	52	15	9	15	59	1.61
4024180--4024205	13	2.0	13	100	0	52	38	15	15	30	1.88
4024162--4024226	32	2.0	32	87	6	94	41	16	13	27	1.87
4027798--4027822	13	1.9	13	100	0	50	36	16	16	32	1.90
4027872--4027986	13	10.1	12	70	29	92	35	17	12	34	1.87
4027873--4027986	34	3.4	34	100	0	228	35	17	12	35	1.87
4027995--4028125	52	2.5	52	88	4	210	34	17	18	29	1.94
4030256--4030309	27	2.1	26	86	10	76	24	38	16	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26