genome.fa.s66.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  4  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656706--656794	32	2.7	33	81	10	103	57	0	0	42	0.98
656745--656791	16	3.0	15	82	17	60	55	0	0	44	0.99
656809--656846	19	1.9	19	89	5	58	55	0	5	39	1.23
657226--657263	20	1.9	19	89	5	58	52	2	0	44	1.14
657617--657652	18	1.9	19	94	5	65	44	0	0	55	0.99
660025--660053	14	2.0	15	93	6	51	62	0	0	37	0.96
660121--660170	25	2.0	26	88	4	75	54	0	0	46	1.00
673056--673110	25	2.2	25	80	6	67	60	3	0	36	1.15
673970--674016	3	15.7	3	100	0	94	68	0	0	31	0.90
675629--675718	44	2.0	44	83	10	112	50	0	0	50	1.00
675891--675918	14	2.0	14	100	0	56	42	0	0	57	0.99
677519--677576	21	2.5	22	78	13	64	67	0	0	32	0.91
678417--678464	21	2.3	22	85	7	64	35	0	0	64	0.94
678769--678857	5	18.8	5	67	15	55	43	0	0	56	0.99
678794--678845	17	2.8	18	80	13	61	48	0	0	51	1.00
678766--678856	18	4.9	18	68	17	60	45	0	0	54	0.99
678775--678885	30	3.7	29	72	19	93	44	1	0	54	1.10
678818--678896	35	2.4	30	80	16	77	41	2	0	55	1.13
679208--679675	160	3.0	156	87	6	653	41	4	12	41	1.63
680657--680698	17	2.5	17	81	11	52	38	0	4	57	1.20
681582--681617	19	2.0	18	89	10	56	50	2	0	47	1.15
684547--684609	25	2.6	22	76	14	54	57	1	0	41	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688034--688059	2	13.0	2	100	0	52	50	0	0	50	1.00
692028--692071	23	1.9	23	90	9	72	45	0	0	54	0.99
692137--692162	2	13.0	2	100	0	52	50	0	0	50	1.00
695686--695743	26	2.2	26	100	0	116	22	13	34	29	1.93
703204--703247	18	2.4	18	82	17	56	63	0	2	34	1.07
703263--703330	6	11.2	6	73	19	52	47	1	0	51	1.09
703261--703320	19	3.1	18	76	19	59	50	0	0	50	1.00
703263--703318	13	5.0	12	75	20	50	46	0	0	53	1.00
703263--703330	25	2.8	25	76	12	70	47	1	0	51	1.09
703308--703373	23	3.0	22	76	8	62	51	4	1	42	1.31
706314--706396	25	3.5	24	74	8	71	50	0	0	49	1.00
706292--706375	29	2.8	29	82	10	80	50	0	0	50	1.00
714671--714705	17	2.1	17	88	0	52	54	2	8	34	1.46
718648--719331	228	3.0	228	79	1	629	22	24	23	29	1.99
721347--721375	2	14.5	2	100	0	58	48	0	0	51	1.00
721872--721930	29	2.1	27	84	15	75	45	0	0	54	0.99
725581--725622	2	20.5	2	90	4	66	50	0	2	47	1.14
731547--731585	21	1.9	20	84	5	51	56	0	0	43	0.99
732273--732308	2	18.0	2	100	0	72	50	0	0	50	1.00
733733--733758	13	2.0	13	100	0	52	46	23	7	23	1.78
745473--745510	2	19.0	2	100	0	76	50	0	0	50	1.00
745775--745808	17	2.0	17	100	0	68	64	0	5	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746259--746299	10	4.3	10	81	9	50	43	0	0	56	0.99
748833--748893	21	2.9	22	80	9	74	49	6	3	40	1.45
748987--749048	16	3.8	16	73	14	54	37	0	1	61	1.06
748983--749063	26	3.0	26	81	15	78	34	1	1	62	1.11
749111--749241	21	6.3	21	69	12	83	51	5	6	37	1.50
749364--749404	19	2.2	19	100	0	82	36	24	24	14	1.93
752350--752379	14	2.1	15	93	6	53	40	6	0	53	1.27
752744--752809	14	4.6	14	73	3	51	56	1	0	42	1.08
753354--753404	23	2.2	24	77	19	56	58	1	1	37	1.20
753779--753811	16	2.0	17	94	5	59	27	0	0	72	0.85
753779--753816	8	4.3	9	81	18	53	31	0	0	68	0.90
754008--754045	20	2.0	20	85	10	53	71	5	5	18	1.25
754510--754607	12	8.1	12	70	10	74	61	2	2	34	1.19
754510--754616	35	2.9	36	81	13	105	59	1	1	36	1.19
754582--754630	21	2.3	22	79	10	57	65	0	0	34	0.93
754644--754734	35	2.7	32	77	11	83	0	20	2	76	0.88
754644--754709	12	5.8	12	74	12	50	0	15	3	81	0.80
754840--754869	12	2.4	12	94	5	51	63	0	0	36	0.95
754960--755008	27	1.9	26	88	12	75	63	0	0	36	0.95
754999--755125	5	26.4	5	70	16	56	60	0	2	37	1.10
755005--755057	19	2.8	19	78	13	65	58	0	3	37	1.16
754966--755082	62	1.9	63	84	8	143	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755143--755188	4	11.8	4	77	13	51	2	21	0	76	0.90
755139--755190	16	3.3	16	86	2	70	1	19	0	78	0.84
756080--756120	18	2.4	18	84	8	59	53	2	0	43	1.13
761448--761482	18	1.9	18	94	0	61	42	0	14	42	1.45
765729--765757	15	2.0	15	93	6	51	58	0	0	41	0.98
766120--766165	22	2.1	22	83	0	56	47	4	4	43	1.42
773911--773984	28	2.6	28	95	2	130	60	0	6	32	1.23
773933--773982	16	3.4	16	68	21	54	58	0	6	36	1.23
773911--773996	28	3.0	28	88	5	84	60	0	6	32	1.23
774451--774503	22	2.5	22	80	20	67	37	0	0	62	0.96
774451--774508	23	2.6	22	81	13	66	39	0	0	60	0.97
775879--775944	33	2.0	33	82	8	82	53	1	3	42	1.25
775938--775967	7	4.3	7	100	0	60	53	0	0	46	1.00
787233--787265	16	2.0	17	94	5	59	45	0	0	54	0.99
787433--787498	21	3.2	21	78	6	73	51	1	0	46	1.10
787567--787614	22	2.3	21	86	10	71	43	2	6	47	1.40
788415--788453	15	2.6	15	87	0	51	41	2	0	56	1.13
789926--789975	25	2.0	26	84	4	66	12	10	2	76	1.11
790105--790138	2	17.0	2	100	0	68	50	0	0	50	1.00
792624--792655	3	10.7	3	100	0	64	0	34	0	65	0.93
795201--795241	17	2.4	17	91	0	64	43	0	0	56	0.99
795449--795489	4	9.5	4	85	15	55	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795446--795489	9	5.0	9	88	5	72	52	0	0	47	1.00
795449--795489	13	3.2	12	83	16	55	53	0	0	46	1.00
809676--809715	14	2.9	14	82	14	55	42	0	5	52	1.23
809715--809751	17	2.3	17	86	9	51	62	0	2	35	1.10
810335--810374	20	2.0	20	90	5	62	22	12	17	47	1.81
827543--827573	11	2.8	11	90	0	53	74	0	0	25	0.82
828087--828159	19	3.7	19	75	15	58	65	0	1	32	1.01
828305--828348	2	22.5	2	93	4	72	47	2	0	50	1.13
828513--828542	11	2.7	11	94	0	51	0	30	0	70	0.88
831334--831386	27	2.0	27	92	0	88	35	11	5	47	1.63
831518--831619	37	2.8	37	95	1	179	41	9	34	14	1.79
831699--831797	37	2.7	37	95	0	180	43	10	32	14	1.78
832284--832309	2	13.0	2	100	0	52	50	0	0	50	1.00
835786--835822	2	18.5	2	100	0	74	48	0	0	51	1.00
837269--837315	23	2.3	19	85	14	58	59	2	2	36	1.21
837303--837345	18	2.5	17	76	3	50	55	0	0	44	0.99
841058--841105	24	2.0	24	87	0	69	47	8	0	43	1.33
851557--851588	16	1.9	16	93	6	55	50	0	0	50	1.00
851639--851690	19	2.8	19	82	2	70	46	0	0	53	1.00
851647--851697	25	2.0	27	84	7	70	43	0	1	54	1.11
853258--853290	2	16.5	2	100	0	66	48	0	0	51	1.00
855058--855114	29	1.9	30	96	3	107	59	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855068--855116	14	3.4	14	77	5	62	63	0	2	34	1.06
855596--855666	29	2.4	29	80	17	76	52	1	2	43	1.24
861294--861356	31	2.0	31	84	6	83	53	0	0	46	1.00
861336--861391	23	2.5	24	74	11	64	55	1	1	41	1.21
867507--867602	26	3.7	26	83	6	106	28	7	12	52	1.66
867507--867580	28	2.7	27	87	6	105	28	6	10	54	1.61
867540--867611	24	2.9	24	83	8	74	29	8	13	48	1.72
872036--872114	28	2.9	26	80	12	79	24	7	17	50	1.72
872037--872131	26	3.7	26	81	12	88	24	7	17	50	1.71
872069--872140	24	2.9	24	85	8	83	20	6	25	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26