genome.fa.s66.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4459716--4460416	160	4.5	157	73	13	498	39	12	26	21	1.89
4460017--4460433	192	2.1	196	84	4	533	39	12	26	21	1.89
4460416--4460473	30	2.0	29	89	3	89	32	17	24	25	1.96
4460422--4460485	29	2.2	30	88	2	94	31	17	23	28	1.97
4461482--4461510	10	2.7	11	89	10	51	0	0	17	82	0.66
4471248--4471286	16	2.5	16	87	4	62	87	5	0	7	0.68
4472614--4472786	28	6.2	28	69	11	97	33	28	16	20	1.95
4472838--4472939	50	2.0	50	98	0	195	35	20	19	24	1.96
4472910--4473068	28	5.7	28	80	5	117	30	28	17	23	1.97
4472937--4473079	56	2.6	56	81	0	169	32	28	16	22	1.96
4472961--4473079	28	4.2	28	86	0	166	31	30	16	21	1.95
4472961--4473116	84	1.9	84	81	0	195	32	28	16	22	1.96
4472961--4473110	56	2.7	56	82	0	156	32	28	17	21	1.96
4472961--4473107	28	5.2	28	82	0	132	33	27	17	21	1.96
4474031--4474105	6	12.7	6	68	18	50	77	0	21	1	0.85
4474035--4474106	19	3.9	19	73	7	60	76	0	22	1	0.86
4482156--4482181	13	2.0	13	100	0	52	38	15	15	30	1.88
4488359--4488397	13	3.0	13	88	0	60	35	17	10	35	1.84
4488519--4488565	22	2.3	20	78	10	51	34	19	4	42	1.70
4490971--4490996	13	2.0	13	100	0	52	38	15	15	30	1.88
4491052--4491109	20	2.8	20	97	2	107	48	10	10	31	1.71
4493903--4493937	17	2.1	17	94	0	61	42	17	11	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4494628--4494683	20	2.8	20	89	7	80	37	16	12	33	1.86
4494712--4494750	20	2.0	20	94	0	69	28	10	17	43	1.82
4494731--4494758	13	2.2	13	100	0	56	32	14	14	39	1.86
4494712--4494780	33	2.1	33	89	5	104	31	11	17	39	1.85
4496195--4496220	13	2.0	13	100	0	52	38	15	15	30	1.88
4496177--4496240	32	2.0	33	90	3	103	39	18	14	28	1.90
4498439--4498488	21	2.3	21	80	10	57	56	4	18	22	1.58
4502395--4502459	13	5.0	13	100	0	130	30	15	15	38	1.88
4502580--4502625	21	2.2	20	81	11	58	32	19	4	43	1.71
4504991--4505016	13	2.0	13	100	0	52	38	15	15	30	1.88
4510431--4510457	13	2.1	13	100	0	54	29	14	14	40	1.86
4512968--4513025	19	3.1	18	83	11	71	37	15	13	32	1.87
4512942--4513003	32	1.9	33	90	3	99	32	16	12	38	1.86
4512969--4513024	20	2.8	20	86	7	71	35	16	14	33	1.88
4513054--4513120	20	3.7	20	74	25	85	29	14	17	37	1.91
4513070--4513133	13	5.4	13	78	21	86	31	15	15	37	1.89
4513054--4513155	33	3.1	33	94	2	170	30	13	17	38	1.89
4514774--4514846	34	2.1	35	82	7	87	17	16	10	54	1.70
4518474--4518501	7	4.0	7	100	0	56	42	14	0	42	1.45
4520078--4520103	2	13.0	2	100	0	52	0	50	0	50	1.00
4520103--4520137	2	17.5	2	100	0	70	48	0	0	51	1.00
4525100--4525146	22	2.2	21	84	3	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4525293--4525323	9	3.6	9	95	4	55	32	0	9	58	1.31
4528411--4528443	10	3.2	11	87	12	52	0	45	0	54	0.99
4529887--4530650	79	9.7	79	80	5	712	33	12	25	28	1.92
4530404--4530457	28	1.9	28	88	0	81	33	11	25	29	1.91
4529889--4530645	234	3.2	230	78	8	785	33	12	25	28	1.93
4532884--4532924	21	2.0	21	85	9	57	39	12	9	39	1.76
4536663--4536703	14	2.9	13	89	10	55	80	0	19	0	0.71
4536663--4536703	21	1.9	22	90	5	66	80	0	19	0	0.71
4537354--4537404	22	2.4	21	93	3	84	23	0	5	70	1.09
4537360--4537416	27	2.1	28	83	9	73	22	0	7	70	1.11
4537352--4537440	11	8.5	11	75	9	69	28	1	4	66	1.18
4537435--4537507	32	2.3	33	76	11	80	42	1	0	56	1.08
4537436--4537495	6	9.7	6	74	13	50	36	1	0	61	1.06
4537546--4537600	26	2.1	27	83	10	69	45	3	0	50	1.19
4550166--4550372	105	2.0	105	95	0	369	25	17	24	32	1.96
4555647--4555698	23	2.3	23	86	3	70	71	3	1	23	1.13
4555872--4555902	13	2.4	13	94	0	53	67	0	0	32	0.91
4559178--4559203	13	2.0	13	100	0	52	38	15	15	30	1.88
4560299--4560425	61	2.1	61	100	0	254	33	22	16	27	1.95
4560401--4561014	220	2.8	220	99	0	1219	29	17	17	35	1.93
4565880--4566060	52	3.5	52	96	0	335	27	17	18	36	1.93
4566131--4566206	19	4.0	19	89	3	109	39	17	9	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4577549--4577588	17	2.3	18	91	4	64	82	7	10	0	0.84
4578599--4578689	37	2.5	37	92	3	150	24	18	12	45	1.83
4579049--4579312	28	9.4	28	82	6	259	32	29	17	20	1.96
4579049--4579312	84	3.1	85	83	7	299	32	29	17	20	1.96
4579334--4579614	49	5.9	43	75	11	148	25	24	17	32	1.97
4579371--4579614	49	4.9	49	83	3	299	25	25	16	32	1.96
4579371--4579606	101	2.4	98	84	2	301	25	26	16	32	1.96
4579371--4579774	150	2.6	151	82	5	447	26	25	14	32	1.95
4580263--4580316	19	2.8	18	77	20	63	37	12	16	33	1.87
4580304--4580329	13	2.0	13	100	0	52	38	15	15	30	1.88
4580376--4580403	13	2.2	13	100	0	56	28	14	17	39	1.89
4580358--4580421	33	1.9	33	87	6	94	31	15	12	40	1.85
4581942--4582187	121	2.0	121	97	0	465	26	23	20	28	1.99
4582980--4583058	31	2.5	31	85	4	97	26	13	10	49	1.74
4583008--4583125	50	2.3	51	85	1	166	30	15	13	40	1.86
4584017--4584056	20	2.0	20	85	9	55	22	22	10	45	1.82
4585227--4585298	28	2.6	28	84	10	94	23	18	34	23	1.96
4585148--4585352	107	1.9	108	82	5	254	29	16	27	26	1.96
4585286--4585671	52	7.4	51	73	10	271	32	12	25	29	1.92
4585176--4585673	263	1.9	263	90	1	802	31	13	26	28	1.94
4585492--4585565	27	2.7	28	89	2	105	21	20	33	24	1.97
4588039--4588064	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4588018--4588084	33	2.0	33	88	0	98	43	16	14	25	1.86
4588104--4588173	19	4.1	18	77	22	87	37	15	11	35	1.84
4588126--4588150	13	1.9	13	100	0	50	32	16	16	36	1.90
4588107--4588169	32	2.0	32	96	0	117	36	15	12	34	1.86
4595313--4595357	15	3.0	15	76	0	54	42	42	0	15	1.47
4602645--4603022	28	13.4	28	83	3	420	30	31	15	22	1.95
4602642--4603022	113	3.4	112	84	3	471	30	30	15	23	1.95
4604103--4604247	51	2.8	51	87	2	211	26	18	10	44	1.82
4604101--4604280	51	3.5	51	82	7	206	29	16	10	43	1.80
4605158--4605196	20	2.0	20	89	0	60	23	12	12	51	1.74
4609331--4609369	21	1.9	20	94	5	69	35	20	10	33	1.86
4609510--4609537	13	2.2	13	100	0	56	28	14	17	39	1.89
4622145--4622246	6	17.0	6	71	19	63	81	14	3	0	0.83
4622146--4622243	13	7.5	13	73	12	85	80	15	4	0	0.85
4622147--4622246	26	3.8	26	82	11	125	82	14	4	0	0.82
4622147--4622246	27	3.8	27	80	15	120	82	14	4	0	0.82
4623660--4623734	31	2.5	31	89	6	111	30	30	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!