genome.fa.s66.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold66
Parameters: 2 7 7 80 10 50 1000
Length:  4623749

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  24  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4179989--4180026	2	19.0	2	88	0	58	47	2	2	47	1.30
4180781--4180845	30	2.2	30	82	12	82	63	9	0	27	1.25
4183806--4183830	3	8.3	3	100	0	50	68	0	0	32	0.90
4184978--4185032	3	18.3	3	88	0	83	63	1	3	30	1.22
4188799--4188829	3	10.3	3	100	0	62	35	0	0	64	0.94
4189202--4189933	399	1.8	399	83	5	960	39	14	13	31	1.86
4190465--4190582	58	2.0	58	93	0	200	46	14	15	23	1.82
4191752--4191784	14	2.4	14	90	10	50	6	9	3	81	0.95
4192687--4192831	48	3.0	48	96	0	263	35	22	23	18	1.95
4193124--4193160	19	1.9	19	100	0	74	51	0	0	48	1.00
4193759--4193907	72	2.1	72	92	0	244	21	9	26	42	1.83
4194817--4194855	6	6.7	6	82	5	53	48	2	0	48	1.15
4195189--4195232	17	2.6	16	86	10	61	52	4	2	40	1.34
4198727--4198787	19	3.1	19	75	13	61	29	13	13	44	1.81
4200483--4200537	21	2.7	21	75	5	60	34	10	14	40	1.81
4200569--4200596	13	2.2	13	100	0	56	28	14	17	39	1.89
4202955--4203140	51	3.6	51	84	5	257	30	25	10	33	1.90
4202955--4203140	52	3.6	52	86	3	268	30	25	10	33	1.90
4203148--4203330	79	2.3	80	83	4	219	27	25	13	32	1.94
4205379--4205407	4	7.2	4	100	0	58	24	0	0	75	0.80
4215719--4215773	9	6.4	9	83	6	62	89	9	1	0	0.57
4215719--4215773	12	4.3	12	88	11	83	89	9	1	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4215719--4215773	1	55.0	1	77	0	56	89	9	1	0	0.57
4215719--4215773	26	2.2	25	90	6	85	89	9	1	0	0.57
4216774--4217000	55	4.0	55	86	9	289	25	29	22	22	1.99
4216747--4216996	61	4.3	58	83	11	300	26	28	22	23	1.99
4217014--4217267	55	4.6	53	84	7	294	27	26	21	24	1.99
4216858--4217147	148	1.9	151	86	6	417	25	30	21	22	1.99
4216774--4217471	264	2.6	263	88	4	981	26	28	21	23	1.99
4217013--4217468	109	4.2	108	76	15	415	26	27	21	24	1.99
4217069--4217468	210	1.9	210	89	5	630	26	28	21	24	1.99
4217279--4217472	55	3.4	55	85	6	246	26	28	22	23	1.99
4217455--4217646	42	4.4	43	80	8	221	20	27	15	37	1.92
4217455--4217675	42	5.1	42	79	13	202	18	27	14	40	1.88
4218428--4218470	21	2.0	22	90	4	70	39	13	9	37	1.78
4218514--4218555	21	2.0	21	95	0	75	40	9	21	28	1.84
4218542--4218567	13	2.0	13	100	0	52	30	15	15	38	1.88
4220920--4221104	51	3.6	50	83	8	237	29	25	11	32	1.91
4220920--4221104	52	3.6	51	84	7	239	29	25	11	32	1.91
4221089--4221160	27	2.6	28	86	8	103	25	33	19	22	1.97
4221117--4221289	79	2.2	79	89	5	260	27	26	13	32	1.94
4223126--4223508	165	2.3	166	79	7	411	33	13	14	38	1.85
4230327--4230355	2	14.5	2	100	0	58	0	48	0	51	1.00
4232162--4232195	2	17.0	2	93	0	59	0	47	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4232195--4232231	2	19.0	2	94	5	67	48	0	0	51	1.00
4233513--4233539	14	1.9	14	100	0	54	66	7	25	0	1.17
4236661--4236714	20	2.7	20	91	2	81	35	7	20	37	1.81
4239197--4239247	27	1.9	26	84	11	68	15	31	21	31	1.95
4243240--4243396	81	1.9	81	100	0	314	35	12	13	39	1.82
4252783--4252906	49	2.6	47	82	7	153	29	19	28	22	1.98
4252977--4253946	28	33.4	28	78	9	604	25	16	28	29	1.96
4253783--4253965	55	3.3	55	85	3	260	33	13	28	24	1.93
4253784--4253965	82	2.2	83	88	5	271	34	13	28	24	1.93
4253782--4253965	28	6.7	27	86	2	242	33	13	28	24	1.93
4255285--4255319	6	5.7	6	89	3	52	2	14	17	65	1.38
4262255--4262555	135	2.2	135	89	1	462	19	17	18	43	1.88
4266168--4266281	42	2.7	43	82	4	124	16	26	14	42	1.87
4266362--4266669	31	9.4	31	67	13	114	30	27	23	17	1.97
4266362--4266669	99	3.1	99	81	0	348	30	27	23	17	1.97
4267230--4267280	20	2.5	21	78	9	61	43	3	15	37	1.66
4273858--4274065	29	7.2	29	66	21	78	25	9	14	50	1.72
4273820--4273934	58	2.0	58	84	0	149	26	13	15	44	1.84
4273957--4274078	58	2.1	57	83	4	147	26	7	13	52	1.67
4276701--4277170	163	2.9	161	81	7	544	41	11	10	36	1.75
4277931--4277996	21	3.2	21	80	2	62	4	19	0	75	0.97
4287317--4287477	71	2.3	71	83	8	179	36	9	22	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4289955--4290006	20	2.5	21	84	3	61	28	13	15	42	1.85
4290413--4290465	19	2.5	21	76	14	56	41	1	0	56	1.10
4292185--4292240	23	2.5	23	83	13	73	80	3	7	8	1.01
4293619--4293686	19	3.9	19	78	21	85	35	11	14	38	1.83
4293621--4293683	32	2.0	32	96	0	117	34	12	15	36	1.86
4293640--4293664	13	1.9	13	100	0	50	36	16	16	32	1.90
4293726--4293751	13	2.0	13	100	0	52	30	15	15	38	1.88
4293706--4293772	33	2.0	33	88	0	98	26	14	14	43	1.85
4296117--4296458	52	6.5	53	69	14	199	29	25	12	32	1.92
4296180--4296572	107	3.7	106	73	11	345	27	26	14	31	1.95
4296122--4296457	104	3.2	103	71	13	297	30	25	12	32	1.92
4296442--4296516	28	2.7	28	87	0	96	24	33	18	24	1.97
4296120--4296514	212	1.9	212	89	3	616	28	26	13	31	1.94
4306127--4306346	79	2.8	79	78	2	210	35	16	23	25	1.95
4306277--4306408	50	2.6	50	86	3	167	34	13	25	25	1.93
4309367--4309392	13	2.0	13	100	0	52	38	15	15	30	1.88
4309347--4309410	32	2.0	33	87	3	94	42	15	12	29	1.84
4317579--4317641	32	1.9	33	87	3	92	42	12	14	30	1.82
4325756--4325813	23	2.5	23	94	5	100	27	13	17	41	1.87
4326608--4327582	74	13.5	72	74	9	522	37	13	22	26	1.92
4326702--4327489	354	2.2	359	80	7	841	36	13	23	26	1.92
4327036--4327567	216	2.5	217	77	9	521	38	13	21	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4326909--4327573	143	4.7	145	77	10	403	37	14	22	26	1.92
4329618--4329671	20	2.7	20	97	0	99	27	11	12	48	1.76
4329574--4329717	70	2.1	70	86	2	200	29	14	13	43	1.83
4332008--4332541	79	6.8	79	81	6	589	29	26	12	32	1.93
4332045--4332541	237	2.1	237	85	4	655	29	26	12	31	1.93
4332497--4332596	51	2.0	51	91	0	164	32	23	10	35	1.88
4332534--4332717	78	2.3	78	80	8	214	25	25	15	34	1.95
4332342--4332741	209	1.9	207	82	8	494	28	24	13	34	1.92
4336537--4336600	29	2.2	29	88	0	101	35	4	20	39	1.73
4336788--4337186	157	2.6	156	81	6	443	24	17	17	41	1.90
4336706--4337226	156	3.4	153	77	8	470	26	16	17	39	1.90
4339236--4339361	35	3.5	35	73	14	123	30	10	11	47	1.72
4339240--4339377	72	1.9	71	89	5	217	31	8	10	48	1.69
4340372--4340423	26	2.0	27	84	3	70	73	9	11	5	1.25
4340977--4341243	109	2.4	112	82	8	314	34	15	11	38	1.84
4341883--4342029	68	2.1	69	81	8	183	21	17	17	44	1.87
4342022--4342168	44	3.3	44	68	11	129	26	19	10	44	1.82
4341952--4342172	88	2.5	88	87	2	302	24	19	12	43	1.85
4342693--4342879	60	3.1	58	80	6	196	16	17	20	45	1.86
4343010--4343131	61	2.0	61	83	3	156	19	14	18	46	1.84
4343354--4343515	76	2.1	76	85	7	213	26	15	11	46	1.80
4343355--4343549	77	2.6	76	82	5	216	27	14	12	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4344119--4344545	121	3.6	120	76	9	336	23	22	10	44	1.83
4344083--4344583	80	6.3	79	77	9	340	24	21	9	44	1.82
4344083--4344593	40	12.8	41	77	10	305	24	21	9	44	1.82
4344352--4344625	80	3.4	77	78	5	253	22	20	10	46	1.81
4344567--4344689	40	3.1	39	78	4	120	17	17	14	50	1.78
4344614--4344698	40	2.1	40	80	4	91	21	22	11	44	1.84
4344761--4344964	67	3.1	66	79	2	212	19	24	12	44	1.85
4346864--4347207	156	2.2	156	80	5	349	29	13	16	40	1.87
4348355--4348637	155	1.8	155	81	1	352	26	16	15	41	1.88
4353184--4353234	22	2.4	22	83	9	61	62	7	0	29	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26