genome.fa.s69.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Length:  2104606

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1499248--1499364	51	2.3	51	89	1	173	25	17	15	41	1.88
1501726--1502705	158	6.3	158	77	9	671	28	24	13	33	1.93
1501726--1502073	79	4.4	80	81	6	406	27	25	12	33	1.92
1501726--1502117	79	4.9	79	80	8	381	27	25	13	33	1.93
1502060--1502177	61	1.9	61	81	6	141	26	27	14	31	1.95
1502137--1502701	79	7.2	80	79	7	498	29	24	13	33	1.93
1501996--1502256	140	1.9	140	83	3	346	27	26	14	31	1.95
1501904--1502307	219	1.8	218	83	5	539	27	25	14	32	1.94
1502120--1502702	158	3.7	158	82	4	678	28	24	13	33	1.93
1502118--1502702	236	2.5	235	79	5	626	28	24	13	33	1.93
1504806--1505246	168	2.7	164	84	5	532	28	10	7	52	1.64
1507293--1507802	155	3.3	153	76	7	499	24	19	20	35	1.96
1509891--1510753	30	29.3	29	71	12	315	26	28	11	33	1.91
1509835--1510055	29	7.5	29	72	15	141	27	24	13	35	1.92
1510002--1510170	86	1.9	89	84	3	227	29	30	7	32	1.85
1509999--1510847	30	28.7	29	71	12	378	26	29	11	32	1.91
1509890--1510847	59	16.2	58	72	11	416	26	28	11	33	1.91
1510337--1510861	89	5.9	90	72	10	289	26	29	11	31	1.92
1510864--1511115	32	7.9	32	77	6	226	31	26	18	23	1.97
1510864--1511115	125	2.0	129	84	6	336	31	26	18	23	1.97
1510873--1511218	63	5.5	63	76	11	241	30	26	18	23	1.98
1510875--1511157	32	8.9	33	80	4	142	31	25	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511394--1511736	52	6.6	51	76	6	251	27	23	14	34	1.94
1517537--1517748	113	1.9	112	83	4	275	40	14	15	29	1.87
1519805--1520008	104	1.9	106	83	3	261	20	12	14	52	1.74
1522984--1523023	21	2.0	20	85	5	53	20	5	0	75	0.99
1524050--1524087	17	2.2	17	86	9	51	78	0	2	18	0.86
1524050--1524090	6	7.0	6	83	10	50	78	0	2	19	0.87
1524198--1524228	14	2.2	14	94	0	53	74	0	25	0	0.82
1525310--1525419	29	3.8	28	80	4	103	45	6	15	32	1.71
1525396--1525444	24	2.0	24	88	0	71	51	2	18	28	1.58
1528204--1528233	3	10.0	3	92	0	51	33	3	0	63	1.11
1528936--1528967	2	15.5	2	93	6	55	50	3	0	46	1.17
1537658--1537704	22	2.1	22	96	0	85	48	0	6	44	1.28
1537672--1537715	20	2.2	20	83	0	52	54	0	4	40	1.21
1539162--1539200	5	7.2	5	86	13	51	0	25	0	74	0.82
1539162--1539203	15	2.7	16	86	13	61	0	26	0	73	0.83
1539169--1539202	11	3.1	11	100	0	68	0	26	0	73	0.83
1539395--1539499	45	2.2	46	76	11	104	58	7	3	30	1.44
1539551--1539575	3	8.3	3	100	0	50	68	0	0	32	0.90
1542297--1542331	16	2.2	16	94	0	61	34	11	11	42	1.77
1542798--1542869	23	3.2	23	80	7	103	54	5	0	40	1.24
1542798--1542932	44	3.2	41	81	11	134	55	3	1	39	1.27
1542837--1542898	30	2.0	31	96	3	117	58	3	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542804--1542898	12	8.8	12	71	19	75	55	5	0	38	1.22
1544283--1544322	18	2.2	18	100	0	80	32	32	10	25	1.89
1547673--1547718	24	2.0	24	86	4	67	50	8	0	41	1.33
1549707--1549744	16	2.4	16	82	8	51	68	0	5	26	1.11
1550333--1550361	13	2.1	14	93	6	51	34	3	0	62	1.12
1550357--1550391	15	2.3	15	95	0	61	34	14	0	51	1.42
1557354--1557383	15	2.0	15	100	0	60	46	0	13	40	1.43
1560172--1560214	19	2.3	19	92	8	70	41	13	18	25	1.88
1561221--1561294	21	3.6	20	80	7	69	28	14	14	41	1.86
1565439--1565645	51	4.3	50	75	16	204	42	12	17	28	1.85
1565488--1565563	20	3.8	20	82	6	91	40	10	14	34	1.80
1565439--1565614	91	1.9	91	91	2	291	42	11	16	28	1.84
1568084--1568130	2	23.0	2	86	4	67	44	2	4	48	1.34
1568982--1569007	2	13.0	2	100	0	52	50	0	0	50	1.00
1569623--1569655	17	1.9	17	100	0	66	54	9	12	24	1.66
1572615--1572654	16	2.5	17	84	12	57	45	0	0	55	0.99
1574150--1574188	7	5.7	7	85	14	55	58	0	0	41	0.98
1574223--1574269	15	3.1	15	80	20	53	57	0	0	42	0.98
1574222--1574256	15	2.4	15	90	4	54	54	0	0	45	0.99
1574248--1574281	7	4.9	7	92	0	50	64	0	0	35	0.94
1574217--1574335	41	3.1	40	75	14	117	53	0	0	46	1.00
1575138--1575166	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577576--1577639	33	2.0	32	81	3	74	56	0	0	43	0.99
1578779--1578907	11	11.5	11	68	21	58	62	0	1	35	1.11
1578777--1578916	33	4.8	28	70	25	87	61	0	1	36	1.10
1578787--1578914	57	2.4	54	77	14	140	61	0	1	35	1.11
1579965--1579999	19	1.9	18	88	11	54	62	2	0	34	1.10
1584333--1584359	2	13.5	2	100	0	54	51	0	0	48	1.00
1587382--1587425	15	2.8	16	77	19	56	70	0	13	15	1.17
1592639--1592680	16	2.6	16	82	14	59	23	7	14	54	1.64
1593470--1593593	63	1.9	64	93	3	214	23	7	16	53	1.67
1593714--1593789	15	5.1	15	68	23	54	46	0	1	52	1.08
1593710--1593760	24	2.0	26	88	11	79	47	0	1	50	1.12
1593721--1593765	20	2.2	20	84	7	56	44	0	2	53	1.13
1593731--1593799	32	2.2	32	84	5	86	42	1	1	55	1.18
1593708--1593786	17	5.1	16	71	20	60	45	0	1	53	1.08
1593856--1593944	15	6.3	15	74	17	57	46	2	1	50	1.21
1593861--1593944	29	3.0	28	70	21	70	46	2	1	50	1.22
1593894--1593952	19	3.0	20	80	14	68	49	1	3	45	1.28
1595145--1595180	2	18.0	2	100	0	72	50	0	0	50	1.00
1599445--1599469	12	2.1	12	100	0	50	24	8	16	52	1.70
1600754--1600820	35	1.9	35	93	0	116	52	11	14	20	1.74
1602948--1603014	28	2.4	27	87	2	89	26	11	19	41	1.86
1602917--1603063	75	2.0	75	88	0	222	31	11	18	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605587--1605717	67	2.0	67	93	0	226	39	16	15	29	1.88
1605720--1605773	21	2.6	21	87	0	90	37	11	12	38	1.79
1608461--1608516	21	2.5	22	85	11	78	37	0	0	62	0.95
1609655--1609693	12	3.0	14	82	17	57	30	0	0	69	0.89
1611413--1611442	2	15.0	2	100	0	60	50	0	0	50	1.00
1614268--1614301	2	17.0	2	100	0	68	50	0	0	50	1.00
1614821--1614895	36	2.1	35	87	2	105	46	0	4	49	1.20
1616644--1616668	12	2.1	12	100	0	50	52	8	0	40	1.31
1617179--1617234	13	4.4	13	79	14	55	57	1	0	41	1.09
1617185--1617237	15	3.7	14	75	9	54	54	1	0	43	1.11
1618029--1618136	54	2.0	54	100	0	216	51	9	5	33	1.57
1618324--1618466	29	4.8	29	80	9	146	54	2	3	39	1.29
1618332--1618466	59	2.3	58	82	3	155	54	2	2	40	1.28
1619578--1619620	22	1.9	23	85	4	61	16	6	0	76	0.99
1619591--1619631	16	2.5	17	80	15	50	21	2	0	75	0.92
1619835--1619870	17	2.1	18	89	5	56	25	0	0	75	0.81
1620788--1620826	20	1.9	20	85	15	53	33	0	10	56	1.33
1621101--1621149	14	3.4	14	72	10	53	53	0	0	46	1.00
1621082--1621163	29	2.9	29	71	18	64	48	0	0	51	1.00
1621170--1621201	17	1.9	17	93	6	57	28	0	0	71	0.86
1621626--1621652	2	13.5	2	100	0	54	0	51	0	48	1.00
1622991--1623015	9	2.8	9	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625069--1625157	27	3.3	27	81	7	92	41	0	0	58	0.98
1625072--1625157	38	2.3	36	82	13	95	40	0	0	59	0.97
1625130--1625187	30	1.9	30	86	6	82	44	1	0	53	1.10
1625106--1625226	18	6.7	18	69	18	65	38	1	0	59	1.13
1626043--1626072	11	2.7	11	100	0	60	46	0	6	46	1.29
1627656--1627721	29	2.3	28	84	5	80	43	3	1	51	1.26
1628008--1628062	18	3.2	17	80	7	67	32	3	3	60	1.32
1636987--1637061	20	3.8	20	80	3	80	40	12	13	34	1.81
1636984--1637061	40	2.0	39	87	2	111	39	12	12	34	1.82
1637896--1637952	29	2.0	29	85	0	78	35	3	12	49	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13