genome.fa.s69.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Length:  2104606

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407903--407952	17	2.9	18	79	11	59	64	0	0	36	0.94
408000--408118	5	24.2	5	65	13	50	43	1	0	54	1.10
408020--408128	16	6.7	16	64	18	55	43	1	0	55	1.10
410443--410473	16	1.9	16	93	0	53	70	0	12	16	1.16
411699--411740	20	2.0	21	86	4	59	59	0	23	16	1.37
411924--412002	21	3.6	22	74	17	74	51	0	2	45	1.14
412046--412078	14	2.3	15	89	5	50	36	0	0	63	0.95
413520--413590	23	3.0	24	70	11	67	46	2	0	50	1.16
414042--414086	21	2.1	21	100	0	90	13	28	13	44	1.81
418097--418156	31	2.0	30	87	9	86	65	0	11	23	1.26
426465--426489	13	1.9	13	100	0	50	36	16	16	32	1.90
426445--426515	34	2.1	34	86	2	99	33	11	14	40	1.81
426556--426580	13	1.9	13	100	0	50	32	16	16	36	1.90
426589--426709	52	2.3	52	97	0	224	34	18	18	28	1.94
430234--430307	12	6.4	12	76	14	84	62	2	5	29	1.31
430234--430294	22	2.7	23	94	2	106	62	3	4	29	1.32
433879--433904	12	2.2	12	100	0	52	61	7	0	30	1.24
434598--434624	2	13.5	2	100	0	54	51	0	0	48	1.00
444829--444889	30	2.0	30	84	6	79	21	26	11	40	1.87
449845--449878	2	17.0	2	93	0	59	50	2	0	47	1.16
450567--450605	20	2.0	20	85	10	53	38	0	5	56	1.22
453157--454231	563	1.9	565	83	3	1385	30	11	20	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455935--455990	27	2.1	27	93	0	94	46	3	12	37	1.59
457540--457594	21	2.6	22	85	8	78	40	10	16	32	1.83
457644--457706	31	2.2	28	76	17	74	20	9	17	52	1.72
457652--457728	32	2.4	32	91	2	120	25	14	18	41	1.88
458999--459262	139	1.9	138	86	6	374	38	12	24	24	1.90
459175--459367	78	2.5	76	88	5	275	44	13	20	21	1.86
459720--459784	20	3.6	20	65	26	63	30	15	13	40	1.86
459719--459815	33	3.0	33	90	1	151	30	15	14	39	1.87
459773--459797	13	1.9	13	100	0	50	32	16	16	36	1.90
460311--460353	22	2.0	22	90	9	70	27	6	25	39	1.81
463730--463792	31	2.0	31	100	0	126	30	12	12	44	1.80
466011--466052	13	3.2	13	77	12	50	33	14	19	33	1.91
468776--468826	20	2.5	20	90	0	75	41	11	13	33	1.81
472195--472422	97	2.4	96	88	2	332	35	11	24	28	1.90
473610--473656	19	2.6	18	86	6	67	51	12	21	14	1.76
473610--473651	19	2.3	19	91	4	68	47	11	23	16	1.80
474531--474568	20	1.9	20	88	0	58	36	15	5	42	1.70
480938--481118	88	2.1	88	96	0	335	25	19	25	29	1.98
481782--481831	21	2.5	20	87	9	68	40	14	18	28	1.89
481891--481963	31	2.4	31	82	11	80	28	13	17	39	1.88
482000--482037	20	1.9	20	94	0	67	31	15	10	42	1.81
481919--482038	52	2.3	50	87	5	177	28	15	14	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493656--494237	62	9.5	62	83	4	662	25	25	18	30	1.98
493663--494235	123	4.7	122	85	3	713	26	25	18	30	1.98
495147--495184	20	1.9	20	88	0	58	36	15	5	42	1.70
497478--497622	79	1.8	78	85	1	200	28	26	12	32	1.92
497557--497670	51	2.2	52	85	1	149	29	26	12	31	1.92
497477--497883	130	3.1	130	84	2	512	28	26	11	33	1.92
497739--497957	79	2.8	79	78	6	230	29	23	12	34	1.91
499703--499918	80	2.7	80	82	2	272	37	12	23	26	1.91
499706--499981	80	3.4	81	81	5	249	34	12	25	27	1.92
499703--500029	160	2.0	159	81	11	375	34	11	25	28	1.90
504028--504065	19	2.1	18	85	14	51	36	0	2	60	1.11
505639--505682	22	2.0	23	82	13	56	20	6	15	56	1.62
506188--506710	152	3.4	151	78	6	506	27	15	18	38	1.91
506189--506710	149	3.4	150	76	8	454	27	15	18	37	1.91
507132--507530	200	2.0	200	91	1	647	40	10	13	35	1.79
522604--522677	11	6.9	10	79	10	76	83	9	4	2	0.86
522603--522678	21	3.5	21	81	13	75	84	9	3	2	0.85
522624--522681	14	4.0	14	76	8	53	81	8	6	3	0.98
523896--524691	28	27.9	28	88	3	1054	28	31	17	22	1.97
530354--530460	20	5.7	20	80	18	113	28	17	14	40	1.88
530374--530400	13	2.1	13	100	0	54	29	14	14	40	1.86
530354--530421	33	2.1	33	91	0	109	29	16	14	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530384--530460	40	1.9	40	94	5	138	25	19	14	40	1.89
532748--532883	52	2.6	52	85	7	188	30	25	11	33	1.91
532866--532938	27	2.7	27	86	2	92	23	31	19	26	1.98
532890--533333	79	5.6	79	90	0	665	26	27	14	31	1.95
533290--533359	28	2.5	28	83	4	88	22	28	17	31	1.96
533315--533477	79	2.1	79	86	0	236	28	24	14	33	1.94
533210--533438	107	2.1	107	82	9	272	27	25	14	32	1.94
535267--535304	18	2.1	19	90	5	60	50	0	0	50	1.00
540414--540459	21	2.2	21	88	11	69	39	19	4	36	1.72
542115--542192	6	13.3	6	76	12	58	28	3	1	66	1.17
542160--542189	5	6.0	5	100	0	60	20	0	0	80	0.72
543838--544163	152	2.1	153	84	3	415	26	13	19	41	1.87
544039--544316	149	1.9	149	80	4	328	28	15	16	39	1.90
544736--545138	200	2.0	200	90	0	628	41	10	12	35	1.77
547953--547990	18	2.1	19	90	5	60	50	0	0	50	1.00
549180--549223	23	1.9	23	90	0	70	54	15	0	29	1.42
549185--549238	23	2.4	23	84	9	67	59	11	1	27	1.42
549263--549295	2	16.5	2	100	0	66	51	0	0	48	1.00
550351--550404	12	4.5	12	80	0	54	0	42	5	51	1.25
550363--550400	18	2.1	18	90	0	58	0	42	5	52	1.24
550372--550418	12	3.9	12	85	0	58	0	38	8	53	1.32
554226--554269	22	2.0	22	95	0	79	29	22	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557035--557063	2	14.5	2	100	0	58	51	0	0	48	1.00
560709--560764	29	1.9	29	85	0	76	46	12	1	39	1.52
560780--560804	12	2.1	12	100	0	50	8	8	0	84	0.79
562543--562569	3	9.0	3	100	0	54	66	0	0	33	0.92
565500--565554	24	2.3	23	84	3	74	60	20	10	9	1.57
565573--565619	24	1.9	25	82	4	60	63	17	6	12	1.48
565719--565758	17	2.4	17	91	0	62	45	22	12	20	1.84
565983--566051	17	3.7	19	74	14	56	17	8	10	63	1.49
565975--566089	54	2.2	52	84	6	142	20	6	8	64	1.45
566022--566090	17	4.0	17	74	9	68	23	4	5	66	1.31
566030--566103	34	2.2	35	80	4	89	24	4	5	66	1.30
566129--566175	23	2.0	23	83	0	58	10	4	17	68	1.35
567252--567289	20	1.9	20	88	0	58	31	18	7	42	1.79
569119--569165	2	23.5	2	100	0	94	51	0	0	48	1.00
569933--569963	2	15.5	2	100	0	62	0	48	0	51	1.00
572663--572689	7	3.9	7	100	0	54	88	0	11	0	0.50
574248--574272	13	1.9	13	100	0	50	36	16	16	32	1.90
574337--574361	13	1.9	13	100	0	50	32	16	16	36	1.90
574370--574493	52	2.4	52	93	4	207	34	18	17	29	1.94
579895--579995	36	3.2	31	78	14	116	29	23	12	33	1.92
582335--582573	88	2.7	86	80	6	257	35	12	25	27	1.91
582818--582849	15	2.1	16	94	5	57	46	0	6	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585151--585210	24	2.6	23	86	7	77	26	18	18	36	1.94
588375--588413	9	4.3	9	81	12	53	43	0	30	25	1.55
588377--588411	3	11.7	3	87	0	52	40	0	31	28	1.57
589486--589672	79	2.4	78	79	7	189	34	13	25	26	1.93
594720--594745	13	2.0	13	100	0	52	30	15	15	38	1.88
595546--595803	49	5.4	48	76	9	206	33	17	24	24	1.96
595637--595910	49	5.9	49	79	10	258	31	16	25	27	1.97
595645--595820	92	1.8	92	88	7	262	30	17	25	26	1.97
595738--595908	43	4.0	41	75	16	150	29	16	25	29	1.97
595964--596039	33	2.3	34	86	4	109	35	13	34	17	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13