genome.fa.s69.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Length:  2104606

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920284--920353	33	2.1	33	84	12	90	31	15	15	37	1.89
923213--923290	20	3.9	19	80	9	84	33	12	14	39	1.84
923163--923338	91	1.9	91	89	4	275	31	15	11	41	1.83
927690--927732	21	2.1	19	83	12	50	53	0	0	46	1.00
927689--927734	20	2.3	20	78	17	51	50	0	0	50	1.00
927893--927963	32	2.1	34	82	10	85	42	1	4	52	1.29
928222--928248	4	6.8	4	100	0	54	22	0	0	77	0.76
929052--929113	15	3.9	15	71	19	54	17	16	33	32	1.92
929037--929092	18	3.3	18	67	23	57	25	10	33	30	1.90
929027--929317	33	8.8	33	78	3	167	22	16	26	34	1.95
939851--939883	14	2.4	14	90	10	50	45	0	3	51	1.16
940213--940258	20	2.6	18	83	16	60	47	0	2	50	1.13
940227--940287	16	3.8	16	78	4	61	49	1	0	49	1.10
940372--940429	28	2.1	28	80	6	64	53	1	0	44	1.10
940586--940626	21	1.9	22	85	5	57	53	0	2	43	1.13
941043--941115	20	3.7	19	83	7	76	28	13	17	39	1.88
941161--941192	13	2.5	13	94	0	55	34	15	12	37	1.85
947445--947487	21	2.0	22	86	4	61	27	16	0	55	1.41
950206--950272	18	3.7	18	82	9	66	49	0	2	47	1.16
950266--950323	25	2.4	23	83	8	71	46	1	0	51	1.11
950462--950504	23	1.9	22	81	13	52	34	9	0	55	1.32
950546--950578	13	2.5	14	90	9	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950571--950612	21	2.0	21	86	9	59	64	2	0	33	1.07
954348--954417	35	2.0	36	85	2	97	47	2	1	48	1.25
954907--954969	18	3.3	18	81	12	81	47	1	1	49	1.20
954906--954971	21	3.3	21	80	16	70	45	3	1	50	1.26
955302--955342	22	1.9	22	90	5	66	53	0	0	46	1.00
956334--956413	28	2.7	27	83	11	88	42	2	3	51	1.33
956886--956915	14	2.2	13	94	5	51	13	0	3	83	0.77
959451--960142	345	2.0	345	91	1	1118	32	21	22	24	1.98
961916--961941	2	13.0	2	100	0	52	50	0	0	50	1.00
963732--963767	2	18.0	2	100	0	72	50	0	0	50	1.00
965950--966116	83	2.0	83	92	2	282	26	15	15	41	1.87
967583--968230	154	4.2	154	79	6	643	40	16	16	26	1.89
968603--968658	19	2.9	19	89	5	85	33	12	17	35	1.88
968603--968657	20	2.8	20	91	2	85	32	12	18	36	1.88
968687--968739	20	2.7	20	88	5	72	33	13	18	33	1.90
975056--975102	22	2.2	22	85	14	64	31	21	0	46	1.51
977398--977424	13	2.1	13	100	0	54	29	14	14	40	1.86
977410--977465	19	2.9	19	84	5	76	33	10	17	37	1.85
977410--977464	20	2.8	20	86	2	76	32	10	18	38	1.85
981778--981860	41	2.0	41	83	4	105	49	12	18	20	1.79
981844--982016	79	2.2	79	82	6	199	45	11	20	21	1.83
981911--982294	160	2.4	159	81	4	382	42	10	23	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981994--982112	41	3.0	40	70	6	107	45	6	22	25	1.77
982250--982357	39	2.7	39	77	8	101	40	8	26	24	1.83
982008--982310	81	3.8	81	69	8	242	41	10	25	22	1.85
982182--982347	81	2.1	81	79	3	174	44	10	24	20	1.82
983439--983710	60	4.6	59	78	3	233	46	16	19	18	1.85
989216--989328	32	3.6	31	84	3	136	22	19	30	28	1.98
989272--990000	28	25.7	28	82	5	717	23	18	30	27	1.97
990764--990800	10	3.7	10	86	13	58	2	0	8	89	0.58
996728--996775	15	3.2	15	75	0	60	16	0	41	41	1.48
1011507--1011674	92	1.8	93	84	6	207	35	14	13	36	1.85
1012254--1013071	153	5.3	153	77	7	676	42	17	14	25	1.87
1012122--1013071	309	3.1	303	76	8	844	42	17	13	26	1.87
1012203--1013072	462	1.9	463	81	6	1057	42	17	14	26	1.87
1014967--1015015	24	2.0	25	84	4	64	46	4	16	32	1.65
1019381--1019424	23	1.9	24	86	9	65	38	22	9	29	1.85
1019911--1019948	20	1.9	20	94	0	67	34	18	10	36	1.85
1020573--1020637	32	2.0	32	90	0	103	20	29	3	47	1.65
1033021--1033074	20	2.7	20	85	0	72	40	12	16	29	1.86
1033126--1033150	13	1.9	13	100	0	50	32	16	16	36	1.90
1033106--1033173	33	2.1	33	88	2	102	35	16	16	32	1.91
1039345--1039380	13	2.8	13	95	0	63	33	19	13	33	1.91
1040063--1040117	20	2.8	20	88	5	76	40	14	14	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042391--1042440	21	2.3	21	80	10	57	56	4	18	22	1.58
1044238--1044268	15	2.1	15	93	0	53	48	16	22	12	1.80
1046339--1046363	13	1.9	13	100	0	50	32	20	16	32	1.94
1046477--1046519	20	2.2	19	84	16	52	30	20	4	44	1.72
1048895--1048919	13	1.9	13	100	0	50	36	16	16	32	1.90
1049698--1049749	20	2.5	20	81	9	59	19	48	26	5	1.71
1051062--1051099	19	2.0	19	94	0	67	44	0	34	21	1.52
1051712--1051765	20	2.7	20	88	0	81	42	12	14	29	1.83
1051817--1051841	13	1.9	13	100	0	50	32	16	16	36	1.90
1051797--1051864	33	2.1	33	88	2	102	35	17	14	32	1.91
1057198--1057238	3	13.7	3	100	0	82	31	34	0	34	1.58
1058871--1058924	18	2.9	18	86	5	63	38	16	11	33	1.84
1060434--1060484	23	2.1	23	82	7	57	37	7	9	45	1.67
1060960--1061073	43	2.7	43	78	6	119	47	14	9	28	1.75
1063392--1063483	28	3.3	28	84	0	112	29	14	10	45	1.78
1063418--1063617	78	2.5	80	79	9	219	28	17	11	44	1.82
1065336--1065377	21	2.0	21	86	9	59	52	0	2	45	1.13
1066229--1066253	4	6.2	4	100	0	50	76	0	0	24	0.80
1066842--1066933	2	47.5	2	69	10	57	54	3	3	39	1.33
1066837--1066914	25	3.0	25	81	12	79	55	5	1	38	1.30
1066853--1066939	14	5.9	15	76	7	72	56	3	3	36	1.33
1066911--1066935	13	1.9	13	100	0	50	56	0	8	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066838--1066935	39	2.5	40	80	14	105	56	3	3	37	1.31
1067583--1067616	16	2.1	16	88	0	50	47	0	0	52	1.00
1069786--1069832	15	2.9	17	84	12	71	59	0	2	38	1.09
1069786--1069832	16	2.9	16	87	12	69	59	0	2	38	1.09
1069786--1069840	16	3.5	15	82	9	65	56	1	1	40	1.21
1070967--1071001	16	2.1	17	89	5	54	54	5	0	40	1.24
1071266--1071320	22	2.5	23	75	19	62	70	5	0	23	1.07
1071370--1071412	18	2.5	17	78	10	52	30	0	11	58	1.34
1072206--1072231	13	2.0	13	100	0	52	30	15	15	38	1.88
1072292--1072364	20	3.6	20	81	3	101	31	19	13	35	1.91
1072270--1072364	41	2.3	42	96	1	174	29	17	12	40	1.87
1074793--1074830	13	2.9	13	88	0	58	34	15	15	34	1.90
1074819--1074895	20	3.6	20	77	16	73	42	15	15	25	1.86
1076910--1076940	15	2.1	15	93	0	53	12	22	16	48	1.80
1078744--1078788	21	2.1	21	84	8	56	22	20	4	53	1.63
1081003--1081028	13	2.0	13	100	0	52	30	15	15	38	1.88
1081089--1081161	20	3.6	20	81	3	101	31	19	13	35	1.91
1081067--1081161	41	2.3	42	96	1	174	29	17	12	40	1.87
1084356--1084402	23	2.0	25	84	16	64	38	23	6	31	1.80
1084821--1084912	20	4.7	19	77	10	78	38	11	16	33	1.85
1085443--1085477	17	2.1	17	100	0	70	28	17	5	48	1.69
1091072--1091386	164	1.9	164	99	0	621	33	17	15	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096253--1096307	20	2.8	20	91	0	92	45	10	14	29	1.79
1101640--1101764	52	2.4	52	95	0	223	28	17	18	36	1.94
1101640--1101784	52	2.8	51	89	4	211	29	17	18	34	1.94
1101773--1101797	13	1.9	13	100	0	50	36	16	16	32	1.90
1101837--1101906	33	2.1	33	89	0	104	40	14	11	34	1.82
1101862--1101886	13	1.9	13	100	0	50	32	16	16	36	1.90
1102210--1102243	2	17.0	2	100	0	68	50	0	0	50	1.00
1105211--1105254	16	2.8	15	76	10	52	36	0	4	59	1.18
1105440--1105477	19	2.0	20	84	5	51	57	0	2	39	1.12
1105997--1106043	19	2.5	19	85	0	58	48	4	6	40	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13