genome.fa.s69.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Length:  2104606

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107767--1107814	21	2.2	23	78	14	57	50	0	0	50	1.00
1108295--1108359	2	32.5	2	100	0	130	49	0	0	50	1.00
1108534--1108582	22	2.3	21	79	10	55	51	0	2	46	1.12
1108550--1108591	15	2.7	15	82	14	50	47	0	2	50	1.14
1108547--1108685	72	1.9	73	83	1	181	40	2	12	45	1.54
1108914--1108991	32	2.4	32	81	12	88	28	7	11	52	1.65
1109564--1109606	22	2.0	22	85	0	59	51	0	4	44	1.22
1110593--1110645	22	2.6	21	82	8	65	30	13	13	43	1.82
1111393--1111432	19	2.1	19	100	0	80	30	15	30	25	1.95
1112428--1112461	12	2.8	12	90	0	59	47	0	29	23	1.52
1112955--1113007	21	2.4	21	78	6	52	56	9	15	18	1.65
1116673--1116706	10	3.4	10	91	0	59	23	0	20	55	1.43
1116859--1116885	13	2.1	13	100	0	54	37	7	14	40	1.74
1120010--1120076	35	1.9	34	87	3	98	37	11	19	31	1.88
1120476--1120517	22	1.9	22	90	9	68	61	0	0	38	0.96
1121142--1121189	20	2.4	20	96	0	87	37	14	10	37	1.81
1121595--1121662	31	2.3	29	82	10	84	55	1	0	42	1.08
1122513--1122559	23	2.0	23	100	0	94	21	4	8	65	1.37
1123447--1123480	2	17.0	2	100	0	68	50	0	0	50	1.00
1124248--1124346	37	2.6	37	90	4	146	34	5	0	60	1.18
1124535--1124573	16	2.4	17	86	4	53	56	2	0	41	1.13
1124601--1124635	17	2.1	17	88	0	52	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124869--1124913	17	2.6	17	86	10	56	24	0	0	75	0.80
1125646--1125684	10	3.9	10	80	12	53	69	0	0	30	0.89
1125634--1125699	22	3.0	22	78	13	64	63	1	4	30	1.23
1125654--1125723	26	2.6	26	73	8	70	65	0	2	31	1.07
1125752--1125880	29	4.2	28	74	16	82	60	0	0	37	1.08
1125744--1125831	40	2.2	41	83	2	106	62	1	0	36	1.03
1126369--1126416	16	3.0	16	81	0	51	50	8	6	35	1.58
1126380--1126426	16	2.9	16	83	0	58	46	12	10	29	1.76
1127449--1127522	16	4.6	16	75	9	62	45	17	12	24	1.82
1129315--1129360	23	2.0	24	91	4	76	73	0	2	23	0.94
1130291--1130331	2	20.5	2	84	0	55	46	0	4	48	1.23
1130303--1130341	18	2.2	18	85	0	51	46	0	10	43	1.37
1131154--1131336	34	5.4	34	88	0	260	25	7	26	39	1.83
1131638--1131700	19	3.3	19	90	0	90	28	17	19	34	1.94
1135766--1135950	34	5.5	34	86	0	255	25	7	25	40	1.82
1137621--1138146	285	1.8	283	81	9	658	41	8	8	42	1.65
1142652--1142694	21	2.0	21	100	0	86	34	4	18	41	1.71
1142656--1142702	21	2.2	21	88	0	67	38	4	12	44	1.62
1147614--1147654	21	2.0	21	85	9	57	39	12	9	39	1.76
1147694--1147764	20	3.6	19	77	7	70	40	16	12	29	1.86
1147734--1147870	53	2.6	53	96	1	247	37	18	17	27	1.93
1147916--1147967	21	2.4	22	93	6	97	26	23	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148004--1148042	13	3.0	13	88	0	60	30	15	12	41	1.85
1148512--1148578	37	1.9	35	88	11	102	32	11	25	29	1.92
1152026--1152103	34	2.3	33	91	4	113	42	12	5	39	1.65
1152037--1152104	34	2.0	34	100	0	136	38	14	2	44	1.61
1153098--1153176	8	9.8	8	75	6	70	79	0	13	6	0.91
1153099--1153184	32	2.7	32	80	8	88	79	0	12	8	0.94
1153099--1153177	24	3.3	24	81	15	92	78	0	13	7	0.95
1153100--1153189	16	5.6	16	78	13	69	77	0	13	8	0.98
1154813--1154842	13	2.3	13	94	0	51	33	16	10	40	1.82
1154763--1154891	62	2.1	63	91	1	206	27	17	15	38	1.90
1157147--1157434	79	3.6	79	80	4	289	28	24	12	34	1.92
1170043--1170110	1	68.0	1	79	0	64	88	8	2	0	0.62
1170040--1170102	12	5.6	12	80	12	71	87	11	1	0	0.62
1170043--1170110	21	3.2	21	85	10	86	88	8	2	0	0.62
1170063--1170124	26	2.4	26	81	10	65	87	3	9	0	0.66
1170044--1170109	33	2.0	34	87	3	98	87	9	3	0	0.63
1170040--1170110	20	3.5	20	84	1	88	87	9	2	0	0.65
1170043--1170110	28	2.4	27	82	7	82	88	8	2	0	0.62
1170063--1170124	17	3.6	17	85	6	72	87	3	9	0	0.66
1170063--1170124	9	7.1	9	80	12	67	87	3	9	0	0.66
1170063--1170127	10	6.2	10	80	15	60	86	3	10	0	0.69
1171138--1171440	61	5.1	61	77	9	270	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171412--1171556	42	3.5	39	74	14	130	18	24	15	41	1.89
1171434--1171725	42	6.8	42	72	13	157	21	22	12	44	1.85
1172173--1172219	16	2.9	16	93	3	76	87	4	8	0	0.67
1172178--1172231	17	3.2	17	89	2	74	85	1	12	0	0.69
1172177--1172231	8	6.4	9	75	12	62	85	1	12	0	0.68
1172176--1172234	10	5.9	10	79	13	59	84	1	13	0	0.69
1173226--1173389	55	2.9	57	80	10	158	26	23	22	26	2.00
1173246--1173544	61	5.0	61	76	10	262	25	25	20	28	1.99
1173519--1173663	42	3.5	39	75	11	112	17	25	15	40	1.90
1174441--1174565	20	5.8	20	73	17	97	26	14	16	42	1.87
1174441--1174610	90	1.9	89	90	1	268	26	15	17	41	1.88
1176910--1177208	79	3.8	79	81	3	307	28	23	13	34	1.93
1178324--1178473	41	3.6	41	77	7	149	18	21	16	44	1.86
1178347--1178840	43	11.7	41	70	11	130	20	19	12	47	1.82
1178294--1178900	84	7.2	83	70	8	299	20	19	13	46	1.84
1178360--1178840	127	3.8	126	74	7	402	20	19	12	47	1.82
1178553--1178755	41	4.9	41	71	9	131	22	17	11	48	1.80
1178680--1178918	41	5.8	42	75	10	136	20	21	13	43	1.86
1178995--1179375	84	4.6	81	72	10	225	19	19	15	45	1.85
1179156--1179413	43	6.1	43	77	8	208	18	18	15	47	1.83
1179078--1179413	84	4.0	85	74	8	247	19	19	15	46	1.84
1179314--1179536	41	5.3	41	74	9	130	21	22	13	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179188--1179422	43	5.6	43	78	4	210	19	21	13	45	1.84
1179199--1179551	127	2.8	125	81	5	367	20	21	13	45	1.84
1179189--1179560	43	8.8	42	74	9	156	20	21	13	44	1.85
1179377--1179645	125	2.2	125	81	4	310	19	20	14	46	1.84
1179953--1180253	84	3.7	80	76	9	281	18	23	15	42	1.88
1179964--1180259	162	1.8	161	83	7	395	18	23	15	42	1.88
1180068--1180259	41	4.7	42	73	11	150	19	23	14	42	1.88
1182597--1182644	20	2.3	21	79	10	55	25	10	12	52	1.71
1183613--1183638	13	2.0	13	100	0	52	30	15	15	38	1.88
1184990--1185015	3	8.7	3	100	0	52	30	0	0	69	0.89
1185406--1185459	28	1.9	28	96	0	99	57	9	0	33	1.31
1185479--1185533	27	2.0	28	82	3	67	47	10	3	38	1.56
1185806--1185847	22	2.0	21	86	13	61	47	0	9	42	1.36
1185756--1186073	154	2.1	152	81	6	376	51	9	8	30	1.64
1188637--1188669	16	2.1	16	100	0	66	12	18	30	39	1.87
1189260--1189290	6	5.2	6	100	0	62	51	0	0	48	1.00
1190722--1191161	79	5.6	79	92	0	700	33	14	24	27	1.94
1192366--1192548	35	5.4	35	86	5	277	19	30	6	44	1.74
1192366--1192554	66	2.8	66	91	4	299	18	29	5	46	1.72
1193170--1193301	42	3.2	41	81	10	153	40	12	28	18	1.88
1193284--1193601	61	5.3	60	84	9	384	26	21	26	26	1.99
1193529--1193700	94	1.8	93	91	3	283	22	19	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193622--1193915	54	5.4	54	93	2	491	21	21	28	27	1.99
1193622--1194311	109	6.2	109	76	12	628	25	20	27	26	1.99
1193840--1194011	95	1.8	94	91	3	283	25	19	28	26	1.99
1193934--1194306	61	6.3	60	81	10	400	26	20	26	26	1.99
1193935--1194577	154	3.8	177	77	13	568	25	20	27	26	1.99
1194234--1194411	100	1.8	95	86	10	254	23	19	31	25	1.98
1194327--1194550	55	4.0	54	86	6	279	23	20	28	26	1.99
1200594--1200738	53	2.8	51	80	9	168	37	11	23	27	1.88
1200673--1201112	79	5.6	79	93	0	709	33	14	25	27	1.94
1202310--1202492	35	5.4	35	86	5	277	18	30	6	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13