genome.fa.s69.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold69
Parameters: 2 7 7 80 10 50 1000
Length:  2104606

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213611--213671	22	2.9	20	77	18	70	45	0	11	42	1.40
213615--213671	21	2.7	19	82	15	60	45	0	12	42	1.41
213610--213684	22	3.5	20	74	15	62	44	1	10	44	1.47
213824--213876	12	4.2	12	76	9	52	49	7	3	39	1.49
213964--214003	17	2.4	16	84	15	55	37	0	0	62	0.95
214754--214794	16	2.7	16	77	11	50	58	0	0	41	0.98
225845--225884	16	2.5	16	91	0	71	45	0	0	55	0.99
227525--227550	13	2.0	13	100	0	52	38	15	15	30	1.88
227639--227663	13	1.9	13	100	0	50	36	16	16	32	1.90
227622--227684	33	1.9	32	87	3	90	30	15	20	33	1.94
227673--227713	20	2.0	20	95	0	73	29	12	24	34	1.91
228220--228267	23	2.1	23	92	3	80	37	29	0	33	1.58
228412--228439	12	2.3	12	100	0	56	60	10	14	14	1.58
235298--235328	10	3.1	10	95	0	53	0	12	0	87	0.55
235298--235355	24	2.7	21	80	17	66	1	18	0	79	0.82
235446--235471	10	2.6	10	100	0	52	11	53	26	7	1.63
236597--236815	32	6.8	32	91	0	339	17	18	32	30	1.95
236793--238062	27	46.2	27	90	3	1894	28	14	33	23	1.94
239111--239136	13	2.0	13	100	0	52	0	0	15	84	0.62
245829--245864	12	2.8	12	91	8	54	0	13	0	86	0.58
249015--249040	13	2.0	13	100	0	52	38	15	15	30	1.88
248993--249060	33	2.1	32	91	8	111	32	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249129--249154	13	2.0	13	100	0	52	38	15	15	30	1.88
251034--251084	17	3.2	17	73	23	56	62	1	5	29	1.29
252596--252658	19	3.9	16	71	22	51	39	4	6	49	1.49
255570--255639	25	2.8	26	72	10	65	61	5	1	31	1.28
257176--257545	166	2.2	165	80	5	406	32	10	8	49	1.66
258069--258105	12	3.0	13	92	7	60	81	0	18	0	0.70
258070--258108	20	2.0	20	89	0	60	84	0	15	0	0.62
259761--260533	156	4.9	158	77	5	624	38	20	17	23	1.93
259703--260491	312	2.5	313	78	5	819	39	20	17	23	1.93
260929--260962	13	2.6	13	90	9	52	23	0	0	76	0.79
262468--262557	22	4.1	22	82	5	110	13	32	10	44	1.77
263248--263308	29	2.1	30	87	3	88	3	26	14	55	1.55
263846--263912	8	7.9	9	78	18	72	11	7	8	71	1.30
263846--263919	16	4.5	16	77	12	87	12	6	9	71	1.30
263834--263918	34	2.5	33	80	10	84	15	5	9	69	1.34
263829--263924	26	3.8	26	81	14	112	15	5	9	69	1.32
265050--265780	154	4.7	154	78	4	684	40	18	14	26	1.89
267690--267720	7	4.4	7	100	0	62	74	0	0	25	0.82
269376--269414	16	2.3	16	86	8	51	76	0	0	23	0.78
269425--269833	140	2.9	139	86	2	550	35	11	10	42	1.75
272474--272506	12	2.8	12	95	0	57	42	0	0	57	0.98
273147--273292	48	3.0	48	96	0	265	43	15	6	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273204--273278	23	3.2	23	64	14	62	41	16	6	36	1.74
274539--274578	19	2.1	19	90	0	62	32	10	5	52	1.56
275437--275473	2	18.5	2	100	0	74	51	0	0	48	1.00
277679--277742	30	2.1	30	88	5	94	29	12	18	39	1.88
280989--281044	16	3.5	16	71	26	55	48	0	1	50	1.11
281947--282193	49	5.1	49	95	1	435	21	13	25	39	1.90
284081--284115	17	1.9	19	88	11	56	40	11	5	42	1.65
289640--289697	21	2.6	22	81	13	66	43	0	0	56	0.99
290735--290819	30	2.9	29	76	11	93	47	0	0	52	1.00
290942--290991	22	2.2	23	82	10	59	60	0	0	40	0.97
292768--292811	23	1.9	23	90	9	72	0	27	9	63	1.24
296870--296938	28	2.5	28	86	9	88	28	27	14	28	1.95
296764--297103	107	3.2	105	81	4	376	27	25	13	33	1.93
311125--311257	50	2.7	50	90	2	198	25	17	15	41	1.89
313562--313874	107	2.9	107	81	6	348	27	25	13	34	1.93
313773--313846	28	2.6	28	83	12	98	21	24	21	32	1.98
313899--314066	83	2.0	83	96	0	309	30	20	11	37	1.88
318340--318410	20	3.8	20	72	14	78	43	12	11	32	1.78
319930--319959	2	15.0	2	100	0	60	50	0	0	50	1.00
320116--320149	16	2.1	16	88	0	50	26	0	8	64	1.22
324704--324842	63	2.2	63	79	2	154	33	12	10	43	1.77
326544--326568	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326943--326980	2	19.0	2	94	0	67	50	2	0	47	1.15
328159--328218	31	1.9	31	89	3	93	11	11	1	75	1.13
330188--330239	23	2.5	20	75	9	50	36	15	11	36	1.84
332848--333090	123	2.0	119	88	4	353	46	13	8	30	1.73
334594--334664	21	3.5	20	83	14	83	42	14	12	30	1.82
334711--334785	20	3.8	19	71	7	69	32	9	12	46	1.73
338418--338451	2	17.0	2	100	0	68	50	0	0	50	1.00
342795--342821	2	13.5	2	100	0	54	48	0	0	51	1.00
351330--351388	31	1.9	31	96	0	109	38	6	18	35	1.78
355350--355581	116	2.0	116	96	0	428	25	22	14	37	1.92
358339--358979	323	2.0	319	92	1	1066	41	10	8	39	1.70
360153--360215	13	4.8	12	81	11	63	1	11	3	84	0.81
360153--360210	27	2.2	26	90	6	89	1	12	1	84	0.78
360152--360215	23	2.7	24	79	13	78	1	12	3	82	0.85
361591--361637	16	2.9	16	96	0	85	46	19	4	29	1.68
361815--361879	16	4.1	16	83	0	85	15	13	29	41	1.86
361807--361882	32	2.4	32	86	0	98	15	14	26	43	1.85
361821--361937	32	3.7	31	75	13	94	14	14	30	40	1.86
361838--361937	16	6.3	15	76	11	76	14	15	31	40	1.86
363217--363323	40	2.7	40	95	0	196	42	17	24	15	1.89
367709--367811	32	3.2	32	74	15	97	17	17	26	38	1.92
367709--367811	48	2.1	48	83	3	127	17	17	26	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367710--367811	16	6.4	16	73	6	73	17	17	25	39	1.92
368850--369045	107	1.9	102	81	11	236	48	7	4	40	1.50
370060--370115	21	2.5	23	80	8	55	12	8	3	75	1.17
370414--370528	14	8.0	14	69	5	59	29	19	20	31	1.97
370433--370516	29	2.9	28	81	10	91	28	20	20	30	1.97
370433--370528	29	3.3	29	81	8	81	29	20	19	30	1.97
370727--370776	25	2.0	25	92	0	82	24	24	8	44	1.80
371411--371471	32	1.9	32	90	6	97	44	14	9	31	1.78
372791--372835	21	2.1	21	84	8	56	44	0	8	46	1.34
373856--373909	2	27.0	2	100	0	108	50	0	0	50	1.00
381152--381198	3	15.7	3	100	0	94	65	0	0	34	0.93
385767--385797	2	15.5	2	100	0	62	51	0	0	48	1.00
386752--386782	2	15.5	2	93	0	53	48	3	0	48	1.17
391370--391414	21	2.2	20	84	8	54	44	0	2	53	1.13
392668--392697	13	2.3	13	100	0	60	10	6	53	30	1.60
396196--396241	22	2.1	23	88	8	69	65	0	4	30	1.12
396385--396415	16	1.9	16	93	0	53	45	0	3	51	1.17
396504--396666	51	3.2	50	63	16	127	42	9	12	36	1.74
396482--396688	102	2.0	101	98	0	396	42	10	11	35	1.74
401423--401460	14	2.6	15	91	4	60	52	0	0	47	1.00
402210--402234	6	4.2	6	100	0	50	32	52	0	16	1.44
402358--402495	73	1.9	75	89	4	219	22	17	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404022--404051	2	15.0	2	100	0	60	50	0	0	50	1.00
404396--404429	3	11.3	3	100	0	68	32	0	0	67	0.91
405117--405146	2	15.0	2	100	0	60	50	0	0	50	1.00
406438--406517	37	2.1	39	84	9	103	40	2	5	52	1.37
406776--406828	25	2.1	25	82	3	61	52	1	1	43	1.23
407810--407870	9	6.8	9	77	19	65	59	0	1	39	1.08
407815--407865	24	2.0	25	88	7	77	60	0	1	37	1.08
407692--407893	107	1.9	103	86	9	284	57	0	1	40	1.07
407783--407939	77	2.0	79	85	9	216	58	0	1	40	1.06
407877--407951	17	4.4	17	71	17	57	64	0	1	34	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13