genome.fa.s71.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold71
Parameters: 2 7 7 80 10 50 1000
Length:  5741892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  12  of  33  ( 3929 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802340--1802370	16	1.9	16	100	0	62	51	6	6	35	1.53
1803699--1803774	2	38.0	2	83	0	89	40	0	9	50	1.34
1803703--1803774	22	3.3	22	94	0	117	40	0	9	50	1.36
1808981--1809022	22	2.0	22	90	4	68	23	0	0	76	0.79
1809446--1809470	12	2.1	12	100	0	50	60	0	0	40	0.97
1809481--1809534	26	2.1	26	86	6	74	29	0	3	66	1.09
1810425--1810463	19	2.1	18	85	4	51	51	2	0	46	1.14
1810511--1810564	13	4.1	13	77	13	56	53	5	0	40	1.24
1810514--1810563	7	7.4	7	74	17	52	54	4	0	42	1.19
1811239--1811281	16	2.6	17	77	3	52	58	0	0	41	0.98
1811641--1811733	9	10.7	9	66	19	54	39	1	0	59	1.05
1811640--1811735	28	3.3	29	83	12	94	39	1	0	59	1.04
1811640--1811733	13	6.6	15	65	22	51	39	1	0	59	1.04
1811651--1811737	15	6.1	15	71	17	62	39	1	0	59	1.05
1811915--1811962	23	2.1	23	84	7	62	43	2	0	54	1.12
1813329--1813384	16	3.5	16	72	18	53	41	0	1	57	1.09
1813409--1813451	23	1.9	22	90	4	68	11	0	16	72	1.13
1813406--1813458	23	2.4	21	78	12	61	11	0	20	67	1.21
1814846--1814891	16	3.2	16	71	28	57	17	0	10	71	1.13
1818433--1818473	20	2.0	21	85	4	57	26	0	12	60	1.31
1822342--1822367	2	13.0	2	100	0	52	50	0	50	0	1.00
1828822--1828902	36	2.2	36	89	4	119	22	11	30	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843369--1843401	3	11.0	3	100	0	66	66	0	0	33	0.92
1843404--1843436	2	16.5	2	100	0	66	51	0	48	0	1.00
1845634--1845668	2	17.5	2	100	0	70	0	0	51	48	1.00
1846490--1846528	2	19.5	2	94	0	69	51	2	0	46	1.14
1851140--1851168	14	2.0	15	93	6	51	55	0	0	44	0.99
1851545--1851582	20	1.9	20	100	0	76	68	5	2	23	1.23
1853629--1853663	2	18.0	2	94	5	63	51	0	0	48	1.00
1854857--1854937	39	2.1	39	95	0	144	22	25	20	30	1.98
1854865--1854948	39	2.2	39	93	0	141	21	25	21	32	1.98
1854936--1855050	39	2.9	39	82	0	158	22	14	24	38	1.92
1857342--1857401	28	2.2	28	85	5	79	30	1	1	66	1.11
1857771--1857822	16	3.3	16	87	10	72	40	0	1	57	1.10
1857794--1857819	12	2.2	12	100	0	52	38	0	0	61	0.96
1857771--1857848	16	5.3	15	79	17	67	38	0	1	60	1.05
1857811--1857853	13	3.3	13	83	0	59	32	0	0	67	0.91
1857801--1857854	26	2.1	26	92	0	90	37	0	0	62	0.95
1857945--1857980	16	2.3	16	90	4	56	75	11	2	11	1.16
1859628--1859776	75	2.0	75	82	2	183	34	6	6	52	1.52
1859891--1861384	312	4.8	303	76	11	917	36	8	7	46	1.63
1860380--1860422	22	2.0	22	90	9	70	39	0	0	60	0.97
1860348--1860442	20	4.6	20	71	17	70	43	0	0	56	0.99
1859889--1861681	633	2.9	617	79	8	1424	37	8	7	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860704--1860752	23	2.3	22	86	10	66	42	0	0	57	0.99
1860196--1862058	320	5.9	315	74	9	1165	37	8	8	45	1.65
1861030--1861069	20	2.0	20	90	4	64	42	0	0	57	0.98
1860196--1861681	633	2.3	621	81	7	1627	37	8	7	46	1.64
1861783--1861934	77	2.0	76	86	1	214	31	5	9	52	1.58
1864384--1864432	17	2.8	17	78	6	53	20	6	8	65	1.41
1864401--1864454	18	3.0	18	72	22	51	25	5	9	59	1.50
1864829--1864923	41	2.3	41	83	0	118	44	15	10	29	1.80
1865673--1865718	24	1.9	24	86	0	65	43	0	2	54	1.12
1866926--1866963	20	1.9	20	94	0	67	47	0	0	52	1.00
1867846--1868246	197	2.0	199	96	0	743	41	9	8	40	1.68
1869573--1869619	23	2.0	23	87	0	67	46	0	0	53	1.00
1870626--1870674	20	2.5	20	82	0	62	46	4	0	48	1.20
1871045--1871096	23	2.2	25	75	25	60	44	0	0	55	0.99
1871329--1871358	11	2.7	11	94	0	51	66	0	0	33	0.92
1872363--1872419	29	1.9	30	86	10	82	49	0	3	47	1.18
1872650--1872698	3	16.3	3	91	8	82	32	0	0	67	0.91
1872657--1872704	15	3.1	16	88	8	55	33	2	2	62	1.18
1874503--1874557	28	2.0	28	82	7	67	56	1	1	40	1.21
1880228--1880284	25	2.2	25	84	9	69	52	0	0	47	1.00
1880942--1880979	18	2.1	18	90	0	58	42	2	2	52	1.29
1881386--1881428	22	1.9	23	85	4	61	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881733--1881786	24	2.2	25	80	9	67	37	0	0	62	0.95
1881362--1882118	355	2.1	354	80	5	814	41	10	8	39	1.70
1884462--1884661	54	3.7	52	74	9	161	31	19	17	33	1.94
1887984--1888008	13	1.9	13	100	0	50	32	16	16	36	1.90
1896405--1896769	27	12.0	27	82	12	271	19	34	13	32	1.91
1896347--1896807	33	14.6	32	81	12	462	19	33	13	32	1.91
1896404--1896807	119	3.3	120	88	6	569	19	33	13	32	1.91
1896343--1896738	213	1.8	213	84	9	547	19	34	13	32	1.91
1896347--1896769	92	4.5	95	83	9	352	19	34	13	32	1.91
1896871--1897290	49	8.9	49	80	7	474	25	25	16	32	1.96
1896914--1897297	91	4.1	91	77	10	418	25	25	16	32	1.96
1896871--1897297	140	3.0	140	94	0	746	25	25	16	32	1.96
1898426--1898495	28	2.5	28	86	4	88	22	18	35	22	1.95
1898484--1898663	55	3.4	52	81	9	211	30	9	26	33	1.88
1901020--1901045	13	2.0	13	100	0	52	38	15	15	30	1.88
1900999--1901065	33	2.0	33	85	0	89	44	16	13	25	1.84
1901085--1901152	19	3.9	18	76	23	83	38	14	11	35	1.83
1901107--1901131	13	1.9	13	100	0	50	32	16	16	36	1.90
1901088--1901150	32	2.0	32	96	0	117	36	15	12	34	1.86
1901946--1903132	55	20.9	55	85	6	1391	25	19	27	27	1.99
1902075--1902159	27	3.1	27	61	15	66	23	20	28	28	1.99
1901946--1903159	175	7.1	173	89	4	1661	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1902824--1902965	28	5.1	27	62	21	71	26	19	26	28	1.99
1902852--1902937	27	3.1	27	63	21	70	26	18	26	27	1.98
1906886--1908057	136	8.5	136	92	2	1693	25	26	18	29	1.98
1907787--1908023	98	2.4	98	86	2	323	26	28	16	29	1.97
1907787--1908079	49	5.9	48	83	3	199	25	27	16	30	1.97
1908896--1908990	19	5.7	18	71	27	84	33	11	17	36	1.86
1908915--1908971	13	3.9	13	76	24	60	35	14	15	35	1.88
1908896--1908998	32	3.2	32	95	0	188	33	11	18	36	1.87
1909043--1909067	13	1.9	13	100	0	50	32	16	16	36	1.90
1913084--1913801	28	24.9	29	86	5	910	22	17	31	28	1.96
1913083--1913801	57	12.5	57	85	6	932	22	17	31	28	1.96
1915026--1915096	22	3.4	19	79	12	70	1	2	11	84	0.79
1915026--1915096	32	2.2	32	87	5	99	1	2	11	84	0.79
1915047--1915097	16	3.3	15	86	10	75	0	0	11	88	0.52
1915026--1915097	10	6.7	10	81	12	81	1	2	11	84	0.78
1915026--1915110	32	2.7	32	82	10	95	4	2	11	81	0.94
1915060--1915110	22	2.3	23	82	3	59	5	0	11	82	0.83
1915037--1915097	1	61.0	1	76	0	50	0	1	11	86	0.63
1927281--1927311	11	2.8	11	95	0	53	35	3	9	51	1.51
1928168--1928218	26	2.0	25	88	3	75	35	13	11	39	1.82
1931049--1931115	37	1.9	35	88	11	102	29	25	11	32	1.92
1931573--1931598	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931637--1931712	21	3.7	21	82	3	109	28	18	11	40	1.86
1931657--1931730	20	3.7	20	81	3	103	31	20	13	35	1.91
1931637--1931730	41	2.3	41	100	0	188	29	19	12	38	1.89
1933648--1933672	13	1.9	13	100	0	50	32	16	16	36	1.90
1934227--1934273	24	1.9	24	87	12	69	65	17	2	14	1.36
1935174--1935338	84	2.0	84	82	7	201	25	19	3	51	1.63
1936864--1936930	37	1.9	35	88	11	102	29	25	11	32	1.92
1937388--1937413	13	2.0	13	100	0	52	30	15	15	38	1.88
1937452--1937527	21	3.7	21	82	3	109	28	18	11	40	1.86
1937472--1937545	20	3.7	20	81	3	103	31	20	13	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33