genome.fa.s71.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold71
Parameters: 2 7 7 80 10 50 1000
Length:  5741892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  2  of  33  ( 3929 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251764--251800	15	2.5	14	87	12	56	0	18	0	81	0.70
251764--251800	7	5.0	7	87	12	56	0	18	0	81	0.70
252578--252646	33	2.1	33	91	0	111	40	17	7	34	1.77
252706--252763	20	2.9	19	80	12	71	31	8	17	43	1.79
252706--252763	21	2.9	20	76	16	66	31	8	17	43	1.79
253729--253763	18	1.9	18	88	11	54	62	0	0	37	0.95
253784--253847	8	7.9	8	83	10	76	0	17	0	82	0.66
253788--253843	4	14.8	4	80	14	57	0	19	0	80	0.71
253785--253846	12	5.5	11	83	9	81	0	17	0	82	0.67
253785--253848	34	1.9	32	87	9	92	0	17	0	82	0.66
254679--254746	21	3.3	20	76	15	59	38	2	0	58	1.13
255670--255699	14	2.1	14	100	0	60	0	6	0	93	0.35
256421--256460	14	2.9	14	88	3	55	60	2	0	37	1.11
260391--260417	13	2.1	13	100	0	54	29	14	14	40	1.86
260401--260457	19	2.9	19	89	2	87	31	17	17	33	1.93
269161--269234	20	3.8	20	94	1	123	31	16	18	33	1.93
269283--269308	13	2.0	13	100	0	52	30	15	15	38	1.88
269262--269331	33	2.1	34	89	2	106	34	12	20	32	1.90
273554--273758	79	2.6	80	78	9	197	37	13	20	28	1.90
273756--273816	28	2.2	29	85	11	92	29	21	26	22	1.99
273803--273914	51	2.2	51	86	0	161	33	7	25	33	1.83
273938--274047	51	2.2	51	86	0	148	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273792--274127	130	2.6	130	81	1	413	33	11	25	29	1.91
273982--274187	79	2.6	78	83	6	254	33	12	24	29	1.92
281411--281463	19	2.7	19	82	8	63	28	15	15	41	1.87
286785--286825	20	2.1	20	90	4	66	41	7	24	26	1.81
288785--288832	19	2.5	20	82	6	62	16	16	16	50	1.79
302841--302905	34	2.0	34	87	6	98	58	1	1	38	1.17
302857--302911	20	3.0	20	73	24	59	60	0	0	40	0.97
302867--302923	13	4.2	14	75	20	50	59	0	0	40	0.97
303620--303666	22	2.1	23	84	7	62	59	4	0	36	1.17
312386--312434	21	2.4	21	93	3	82	38	12	18	30	1.87
324761--324846	29	3.0	29	75	13	95	61	10	11	16	1.56
325914--325978	26	2.6	24	70	7	58	66	6	3	24	1.29
326275--326645	185	2.0	186	85	5	500	50	7	11	31	1.64
326709--327032	161	2.0	161	94	0	567	40	9	14	34	1.80
333380--333583	54	3.8	55	81	6	256	34	15	22	27	1.94
333380--333597	108	2.0	108	86	1	303	33	15	23	27	1.95
338920--338971	24	2.1	25	85	7	70	25	23	25	26	2.00
341482--341512	10	3.1	10	90	0	53	25	19	12	41	1.87
341614--341669	19	2.9	19	91	2	85	35	17	16	30	1.92
341654--341680	13	2.1	13	100	0	54	40	14	14	29	1.86
341635--341699	32	2.0	32	90	3	103	41	15	16	26	1.88
342231--342264	18	1.9	18	88	5	52	52	20	0	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342217--342279	19	3.2	19	76	19	58	49	22	1	26	1.59
344305--344366	31	2.1	29	87	6	88	53	25	1	19	1.54
348729--348768	3	13.3	3	100	0	80	32	35	0	32	1.58
350345--350408	33	1.9	33	87	12	96	34	20	9	35	1.85
350370--350407	20	1.9	20	88	0	58	39	21	7	31	1.82
350980--351041	30	2.1	30	96	0	115	25	19	24	30	1.98
351785--351846	31	2.0	31	93	0	106	14	20	14	50	1.78
353155--353209	20	2.8	20	94	0	101	34	16	14	34	1.89
356764--356811	22	2.1	24	84	7	64	62	0	2	35	1.07
357597--357635	18	2.0	20	85	9	55	53	5	2	38	1.37
360624--360724	42	2.5	40	82	6	139	27	3	3	64	1.29
362319--362371	25	2.1	25	82	6	63	56	1	0	41	1.10
362334--362400	12	5.7	12	75	16	59	50	0	1	47	1.10
362509--362543	3	11.7	3	93	0	61	68	2	0	28	1.04
363036--363068	2	16.5	2	100	0	66	48	0	0	51	1.00
363349--363373	2	12.5	2	100	0	50	52	0	0	48	1.00
364369--364414	9	5.0	9	78	5	56	19	2	4	73	1.10
364724--364777	27	2.0	27	89	7	83	57	0	0	42	0.98
365693--365739	3	15.7	3	86	0	67	34	0	2	63	1.06
365934--366025	21	4.3	21	80	6	71	58	3	3	34	1.30
366122--366174	22	2.5	21	85	14	74	50	0	0	49	1.00
366841--366889	22	2.2	22	88	3	71	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374219--374406	79	2.4	79	83	6	222	30	13	27	27	1.94
374341--374459	51	2.3	51	85	2	159	31	12	26	29	1.93
374269--374518	130	1.9	130	86	0	356	32	11	25	30	1.91
376862--376976	50	2.3	50	89	0	176	40	14	17	26	1.88
380594--380659	35	1.9	34	87	3	96	33	9	24	33	1.87
383464--383544	29	2.8	29	73	12	76	50	2	6	40	1.40
383479--383586	30	3.6	30	75	14	89	44	4	11	39	1.61
383463--383557	30	3.2	28	78	11	93	48	2	6	43	1.40
387042--387176	50	2.7	50	84	0	180	27	18	11	42	1.85
389533--390015	79	6.1	79	82	3	510	28	25	11	34	1.91
389533--390012	159	3.0	157	82	4	556	28	25	11	34	1.91
392055--392080	4	6.5	4	100	0	52	23	0	0	76	0.78
403175--403591	61	6.9	60	81	5	455	26	25	17	30	1.97
403204--403591	120	3.2	120	85	2	501	27	25	17	29	1.97
403175--403591	181	2.3	180	87	2	593	26	25	17	30	1.97
403872--403916	19	2.3	20	84	3	56	24	15	15	44	1.85
403989--404018	13	2.3	13	100	0	60	40	16	13	30	1.87
403974--404038	33	2.0	33	84	6	87	36	13	16	32	1.89
410269--410318	21	2.4	22	83	9	61	32	20	0	48	1.50
411398--411443	21	2.1	23	84	8	60	32	6	19	41	1.77
412119--412148	13	2.3	13	94	0	51	36	16	13	33	1.88
412104--412168	33	2.0	33	87	6	96	35	13	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412927--413076	61	2.4	63	86	4	207	24	23	20	32	1.98
413075--413433	42	8.7	42	74	15	225	18	25	14	42	1.88
413075--413321	86	2.9	86	78	10	247	19	24	14	42	1.88
414049--414162	50	2.3	50	93	0	192	24	19	15	40	1.90
416539--416655	51	2.3	50	82	8	130	29	25	12	32	1.93
416590--417084	79	6.3	79	80	3	478	27	23	13	34	1.93
416590--417084	158	3.1	156	82	4	557	27	23	13	34	1.93
420372--420424	20	2.7	20	87	0	70	32	22	11	33	1.90
420413--420437	13	1.9	13	100	0	50	32	16	20	32	1.94
420485--420535	19	2.6	20	90	3	77	41	15	15	27	1.88
422706--422745	20	2.0	20	95	0	71	32	10	10	47	1.70
422776--422813	20	1.9	20	100	0	76	31	18	10	39	1.85
422778--422833	19	2.9	19	86	2	67	35	16	14	33	1.88
422799--422861	32	1.9	33	90	3	101	41	12	15	30	1.85
431742--431818	21	3.7	21	89	3	111	35	12	16	35	1.88
431853--431921	19	4.0	18	75	22	76	37	11	14	36	1.83
431856--431918	32	2.0	32	93	0	108	36	12	15	34	1.86
431875--431899	13	1.9	13	100	0	50	36	16	16	32	1.90
431961--431986	13	2.0	13	100	0	52	30	15	15	38	1.88
431944--432007	34	1.9	33	90	3	101	26	17	12	43	1.84
434313--434710	51	7.6	51	69	15	197	28	25	12	32	1.93
434430--434505	27	2.8	28	85	2	100	23	32	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434323--434711	54	7.4	51	70	15	231	28	25	12	32	1.93
434693--434767	28	2.7	28	87	0	96	25	32	17	25	1.97
434323--434819	265	1.9	265	88	3	768	27	26	13	32	1.94
434724--434927	78	2.6	78	84	2	248	24	28	17	29	1.97
436988--437012	4	6.2	4	100	0	50	24	0	0	76	0.80
448345--449003	119	5.6	118	84	7	857	25	28	20	25	1.99
448345--449003	59	11.3	59	87	6	857	25	28	20	25	1.99
448345--449055	55	12.2	55	83	9	626	25	28	20	25	1.99
448345--448998	295	2.2	294	94	2	1142	25	29	20	25	1.99
449813--449889	21	3.7	21	87	3	102	36	12	15	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33