genome.fa.s76.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  2182696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1456 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734455--1734628	84	2.1	84	95	0	312	28	13	19	38	1.89
1734684--1734726	22	2.0	22	86	9	61	37	11	6	44	1.68
1742118--1742707	151	3.9	148	76	11	471	41	19	15	23	1.89
1743946--1744012	12	5.7	12	75	8	57	4	5	20	68	1.29
1744049--1744091	13	3.2	13	80	6	50	9	18	25	46	1.79
1744030--1744088	28	2.2	26	87	6	82	8	16	27	47	1.76
1744291--1744334	19	2.3	19	76	7	54	2	6	9	81	0.94
1744291--1744363	38	1.9	38	81	10	87	4	9	8	78	1.09
1744412--1744512	40	2.5	40	79	3	114	14	16	11	56	1.67
1745555--1745683	42	3.0	42	83	1	150	42	16	23	17	1.88
1746330--1746799	90	5.2	89	75	7	355	33	14	23	28	1.94
1746399--1746640	89	2.7	90	81	1	272	33	14	24	28	1.94
1746420--1746765	179	1.9	180	80	5	396	32	14	23	28	1.94
1746325--1746854	269	2.0	269	79	5	572	32	14	24	28	1.94
1746759--1746937	89	2.0	92	83	3	229	30	13	28	27	1.95
1752751--1753101	151	2.3	152	83	1	436	43	18	15	21	1.87
1752745--1753204	152	3.0	151	81	3	514	42	19	15	21	1.88
1753436--1753469	15	2.2	16	89	5	52	41	0	2	55	1.15
1754290--1754328	20	2.0	20	89	0	60	48	23	7	20	1.75
1754459--1754503	20	2.2	20	81	11	56	4	11	22	62	1.46
1754522--1754577	26	2.1	27	90	3	87	7	17	32	42	1.77
1754788--1754838	23	2.2	23	85	0	66	7	9	5	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754924--1755022	40	2.5	40	89	0	153	16	20	12	51	1.75
1755499--1755548	26	1.9	26	88	8	75	32	0	0	68	0.90
1756443--1756472	12	2.5	12	100	0	60	50	26	16	6	1.70
1769132--1769163	16	2.0	16	93	0	55	37	18	9	34	1.83
1772096--1772120	13	1.9	13	100	0	50	32	16	20	32	1.94
1772076--1772140	33	2.0	33	90	6	105	36	16	13	32	1.89
1772104--1772142	20	2.0	20	94	0	69	41	17	12	28	1.87
1772170--1772244	19	3.9	19	81	6	89	36	16	12	36	1.85
1772170--1772274	19	5.8	19	71	17	80	35	14	12	38	1.83
1772296--1772333	20	1.9	20	88	0	58	28	13	21	36	1.91
1774824--1774888	20	3.6	20	69	26	72	35	10	21	32	1.88
1774823--1774888	33	2.0	33	96	0	123	36	10	21	31	1.87
1774898--1774939	20	2.0	21	95	4	77	28	19	11	40	1.87
1775318--1777369	686	3.0	686	99	0	4023	31	18	17	32	1.94
1780844--1781116	148	1.8	148	99	0	537	19	19	25	34	1.96
1782650--1782721	20	3.7	20	92	1	110	41	16	15	26	1.88
1783533--1783584	23	2.2	24	80	16	65	28	5	5	59	1.44
1784340--1784416	21	3.9	20	81	11	88	42	5	1	50	1.32
1785187--1785256	33	2.1	33	97	0	131	40	8	21	30	1.83
1788430--1788474	23	2.0	23	86	8	65	24	8	2	64	1.34
1795885--1795949	22	3.0	22	77	4	69	35	12	9	43	1.74
1795920--1795970	22	2.2	24	83	13	63	39	9	5	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1795988--1796032	22	2.0	22	86	0	63	40	4	4	51	1.42
1796036--1796089	22	2.5	22	81	0	63	35	14	11	38	1.82
1796170--1796263	22	4.5	22	76	14	92	28	7	12	51	1.67
1796554--1796595	22	1.9	22	90	0	66	38	7	11	42	1.69
1796605--1796761	21	7.5	21	75	5	66	22	10	28	38	1.87
1796640--1796761	42	2.9	42	74	7	113	22	12	25	39	1.89
1800202--1800285	44	1.9	44	85	4	116	30	4	15	48	1.65
1800203--1800295	44	2.1	44	82	7	109	31	4	15	49	1.63
1800594--1800620	7	3.9	7	100	0	54	88	0	0	11	0.50
1802288--1802359	22	3.3	22	82	3	83	36	6	12	44	1.69
1802301--1802369	22	3.1	22	79	8	77	33	8	14	43	1.76
1802493--1802532	21	1.9	21	89	0	62	37	12	12	37	1.81
1802501--1802571	21	3.4	21	76	7	72	23	11	22	42	1.86
1802501--1802592	42	2.2	42	80	5	98	22	13	22	41	1.88
1803747--1803809	33	1.9	32	84	12	83	34	17	11	36	1.85
1803839--1803923	19	4.7	19	75	18	83	34	18	18	28	1.95
1803864--1803936	32	2.3	32	97	0	137	38	17	17	26	1.92
1803879--1803937	13	5.1	13	75	23	60	38	16	16	27	1.91
1806435--1806474	13	3.1	13	92	0	62	42	12	17	27	1.85
1810639--1810698	20	3.9	14	71	26	50	35	18	13	33	1.89
1810647--1810687	20	2.0	21	95	4	75	34	19	12	34	1.89
1810639--1810691	13	4.5	13	71	28	55	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816286--1816358	20	3.6	20	81	3	101	35	13	19	31	1.91
1816304--1816379	21	3.7	21	80	3	100	42	11	17	28	1.84
1816286--1816379	41	2.3	41	98	0	179	39	12	18	29	1.88
1816418--1816443	13	2.0	13	100	0	52	38	15	15	30	1.88
1818647--1818691	21	2.1	21	84	8	56	53	4	20	22	1.63
1820495--1820525	15	2.1	15	93	0	53	48	16	22	12	1.80
1822580--1822618	20	2.0	20	94	0	69	23	15	10	51	1.73
1822607--1822642	13	2.8	13	91	0	54	36	19	11	33	1.87
1825085--1825157	20	3.6	20	82	10	103	34	13	19	32	1.91
1825103--1825178	21	3.7	21	79	10	93	40	11	17	30	1.85
1825085--1825178	41	2.3	41	96	0	170	38	12	18	30	1.88
1825217--1825242	13	2.0	13	100	0	52	38	15	15	30	1.88
1826713--1826777	22	3.0	21	84	4	76	35	10	10	43	1.75
1826748--1826798	22	2.2	24	83	13	63	39	9	5	45	1.62
1826707--1826842	68	2.0	68	80	5	150	38	8	9	43	1.69
1826816--1826860	22	2.0	22	86	0	63	40	4	4	51	1.42
1826864--1826917	22	2.5	22	81	0	63	35	14	11	38	1.82
1826998--1827091	22	4.5	22	76	14	92	28	7	12	51	1.67
1827382--1827423	22	1.9	22	90	0	66	38	7	11	42	1.69
1827433--1827589	21	7.5	21	75	5	66	22	10	28	38	1.87
1827468--1827589	42	2.9	42	74	7	113	22	12	25	39	1.89
1828382--1828557	81	2.2	79	80	7	185	40	18	17	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831030--1831113	44	1.9	44	85	4	116	30	4	15	48	1.65
1831031--1831123	44	2.1	44	82	7	109	31	4	15	49	1.63
1831422--1831448	7	3.9	7	100	0	54	88	0	0	11	0.50
1833116--1833164	22	2.2	22	88	0	71	36	4	12	46	1.60
1833116--1833186	22	3.2	22	80	11	67	33	7	12	46	1.69
1833129--1833197	22	3.1	22	75	8	68	31	8	14	44	1.75
1833321--1833360	21	1.9	21	89	0	62	37	12	12	37	1.81
1833329--1833399	21	3.4	21	76	7	72	23	11	22	42	1.86
1833329--1833420	42	2.2	42	80	5	98	22	13	22	41	1.88
1834575--1834637	33	1.9	32	84	12	83	34	17	11	36	1.85
1834667--1834751	19	4.7	19	75	18	83	34	18	18	28	1.95
1834692--1834764	32	2.3	32	97	0	137	38	17	17	26	1.92
1834707--1834765	13	5.1	13	75	23	60	38	16	16	27	1.91
1837263--1837302	13	3.1	13	92	0	62	42	12	17	27	1.85
1841493--1841560	20	3.8	20	74	25	87	36	17	11	33	1.86
1841491--1841575	13	7.5	13	71	28	86	36	17	12	32	1.88
1841491--1841592	33	3.1	33	95	2	179	36	18	12	32	1.89
1843042--1843084	3	14.3	3	95	0	77	30	34	0	34	1.58
1844766--1844820	19	2.8	20	83	5	76	34	16	18	30	1.93
1844806--1844832	13	2.1	13	100	0	54	40	14	14	29	1.86
1845081--1845130	19	2.5	20	77	6	57	36	14	18	32	1.90
1846422--1846447	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1847152--1847195	21	2.1	21	83	8	54	25	31	4	38	1.76
1849001--1849039	13	3.0	13	100	0	78	38	15	15	30	1.88
1851117--1851147	15	2.1	15	93	0	53	12	22	16	48	1.80
1852949--1852995	21	2.2	22	84	3	60	23	17	4	55	1.59
1855212--1855237	13	2.0	13	100	0	52	30	15	15	38	1.88
1855631--1855805	39	4.5	40	74	9	139	22	12	17	47	1.81
1855632--1855809	78	2.3	78	86	3	234	22	12	16	47	1.81
1857024--1857049	13	2.0	13	100	0	52	38	15	15	30	1.88
1859266--1859312	21	2.2	22	84	3	60	55	4	17	23	1.59
1860801--1860831	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13