genome.fa.s76.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  2182696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1456 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1255974--1256038	19	3.7	19	75	23	79	38	16	10	33	1.84
1255966--1256036	32	2.2	32	94	0	124	36	18	11	33	1.86
1256093--1256150	21	2.8	21	100	0	116	37	20	10	31	1.86
1256554--1256599	18	2.6	18	83	16	60	0	2	10	86	0.64
1256549--1256600	12	4.0	13	90	7	63	0	3	11	84	0.74
1256548--1256599	17	3.0	17	81	18	63	0	3	9	86	0.69
1257555--1258257	55	12.3	56	86	5	734	23	19	29	27	1.98
1259243--1259290	5	9.8	5	80	13	55	0	2	12	85	0.69
1259237--1259288	14	3.6	14	92	5	77	0	3	9	86	0.69
1259237--1259289	19	2.9	18	81	18	65	0	3	9	86	0.68
1287494--1287523	10	3.1	10	95	4	53	0	0	23	76	0.78
1288029--1288084	21	2.7	21	94	2	96	48	12	17	21	1.80
1288108--1288191	13	5.5	13	71	28	60	35	17	13	33	1.89
1288116--1288212	19	5.8	18	72	27	97	37	17	12	32	1.87
1288108--1288210	32	3.2	32	98	0	197	35	18	12	33	1.89
1288248--1288305	21	2.7	22	81	7	75	32	15	15	36	1.89
1288701--1288762	1	62.0	1	75	0	52	0	4	8	87	0.68
1288701--1288762	14	4.4	14	88	11	83	0	4	8	87	0.68
1288701--1288760	18	3.3	18	80	15	70	0	5	8	86	0.69
1289728--1290346	55	11.0	55	85	7	698	23	21	29	26	1.99
1291357--1291413	1	57.0	1	75	0	51	0	5	7	87	0.66
1291358--1291410	14	3.9	14	87	4	65	0	5	7	86	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291342--1291411	32	2.2	32	84	2	86	0	10	5	84	0.78
1291342--1291413	13	5.1	14	76	8	58	0	9	5	84	0.76
1292191--1292258	31	2.2	31	87	12	104	83	14	1	0	0.71
1292194--1292258	28	2.3	28	84	7	78	84	13	1	0	0.69
1293710--1293843	8	15.6	9	67	14	52	79	17	0	1	0.85
1293745--1293846	1	102.0	1	70	0	51	83	15	0	0	0.70
1293745--1293846	14	7.1	15	78	12	92	83	15	0	0	0.70
1293716--1293844	52	2.5	52	81	12	158	80	17	0	1	0.79
1293718--1293846	40	3.2	39	78	14	136	81	17	0	1	0.77
1293716--1293846	27	4.8	26	77	15	115	80	17	0	1	0.78
1293991--1294073	26	3.3	26	69	19	68	0	0	54	45	0.99
1294029--1294077	19	2.5	20	80	9	66	0	0	51	48	1.00
1294021--1294080	18	3.2	19	80	7	77	0	0	51	48	1.00
1294103--1294173	19	3.5	20	70	18	56	0	0	61	38	0.96
1294274--1294311	20	1.9	20	84	10	51	0	2	57	39	1.12
1294374--1294411	19	2.0	20	84	5	51	0	2	50	47	1.15
1294489--1294590	34	3.0	33	78	5	105	20	30	12	36	1.90
1294579--1294684	28	3.8	28	79	7	110	30	30	17	21	1.97
1294558--1294684	56	2.3	56	81	6	134	29	31	15	23	1.96
1294558--1294684	28	4.6	27	78	10	107	29	31	15	23	1.96
1294754--1294937	49	3.7	49	82	4	217	24	28	18	28	1.98
1294743--1294930	98	1.9	100	85	4	265	25	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1295827--1295851	13	1.9	13	100	0	50	36	16	16	32	1.90
1295808--1295875	32	2.1	32	94	0	118	35	11	16	36	1.85
1295787--1295870	19	4.7	19	78	18	99	34	11	16	36	1.86
1295926--1296123	52	3.8	52	93	2	310	35	18	16	28	1.93
1302275--1302341	15	3.9	17	80	14	68	79	0	17	2	0.86
1302275--1302327	20	2.8	19	83	8	72	77	0	18	3	0.92
1302279--1302341	12	5.4	11	76	10	54	79	0	17	3	0.86
1303002--1303038	18	2.1	18	89	0	56	37	10	10	40	1.75
1305603--1305824	91	2.4	91	81	8	263	29	23	8	38	1.85
1308449--1308499	23	2.3	23	79	3	59	68	3	0	27	1.07
1308447--1308514	18	3.8	18	90	1	102	66	5	0	27	1.15
1308447--1308508	13	4.6	14	75	13	51	66	3	0	30	1.08
1309241--1309285	23	1.9	24	86	4	65	44	11	15	28	1.81
1311523--1311637	57	2.0	57	96	0	212	31	16	26	26	1.97
1314967--1315022	22	2.4	24	79	8	71	41	0	0	58	0.98
1318279--1318336	18	3.2	18	82	4	73	60	0	1	37	1.07
1319258--1319313	27	2.1	27	82	0	67	37	8	8	44	1.67
1319805--1319866	18	3.3	19	80	15	58	62	6	3	27	1.35
1321131--1321156	13	2.0	13	100	0	52	38	15	15	30	1.88
1325225--1325255	15	2.1	15	93	0	53	48	16	22	12	1.80
1327334--1327369	13	2.8	13	95	0	63	27	16	13	41	1.87
1327480--1327526	21	2.3	21	79	20	55	34	19	4	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327482--1327524	20	2.2	19	84	16	52	32	18	4	44	1.71
1329905--1329930	13	2.0	13	100	0	52	38	15	15	30	1.88
1333423--1333478	21	2.7	21	94	0	103	30	21	16	32	1.95
1333518--1333582	33	2.0	33	87	0	94	29	13	12	44	1.81
1335865--1335973	50	2.2	50	81	6	123	26	22	11	40	1.87
1335944--1336151	79	2.6	79	83	3	204	28	22	12	35	1.92
1336085--1336204	51	2.4	51	82	0	150	28	24	13	34	1.93
1336136--1336443	79	3.9	79	77	5	327	25	25	16	32	1.96
1336008--1336288	130	2.2	131	85	5	374	25	25	14	34	1.94
1335945--1336357	207	2.0	209	80	4	469	27	23	13	35	1.93
1348614--1348671	1	58.0	1	75	0	53	87	10	1	0	0.60
1348616--1348665	7	7.4	7	82	17	70	88	12	0	0	0.53
1348614--1348671	9	6.6	9	82	7	66	87	10	1	0	0.60
1348614--1348671	14	4.2	14	86	6	75	87	10	1	0	0.60
1348614--1348671	21	2.9	21	79	5	66	87	10	1	0	0.60
1349645--1349834	100	1.9	100	86	4	276	24	32	16	26	1.96
1349761--1349973	61	3.5	61	89	1	311	25	30	19	25	1.98
1349945--1350086	40	3.5	38	72	12	122	21	26	14	38	1.91
1349967--1350190	42	5.2	43	73	13	160	19	26	11	42	1.84
1349940--1350216	84	3.3	85	81	6	280	20	27	12	38	1.90
1350057--1350212	46	3.6	42	76	10	111	21	27	12	38	1.90
1350803--1350832	13	2.3	13	94	0	51	26	16	16	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1353294--1353446	80	1.9	80	82	5	193	28	19	13	37	1.90
1353383--1353497	51	2.3	51	85	0	149	31	24	10	33	1.89
1353434--1353730	79	3.7	79	78	6	262	25	24	15	34	1.94
1355195--1355281	36	2.6	34	79	13	108	32	22	14	29	1.94
1355722--1355746	13	1.9	13	100	0	50	32	8	16	44	1.76
1355743--1355863	32	3.8	32	93	0	206	38	9	22	28	1.86
1359192--1359246	21	2.6	21	85	0	65	18	21	0	60	1.37
1359207--1359250	21	2.1	21	91	0	70	20	18	0	61	1.35
1361342--1361366	13	1.9	13	100	0	50	32	16	16	36	1.90
1361367--1361416	24	2.1	24	96	0	91	36	4	30	30	1.76
1362290--1362326	19	1.9	19	100	0	74	27	16	18	37	1.92
1362826--1362870	21	2.1	21	87	0	63	17	22	0	60	1.37
1362841--1362884	21	2.1	21	86	0	61	22	15	0	61	1.34
1368033--1368064	2	16.0	2	100	0	64	50	0	0	50	1.00
1368218--1368277	27	2.1	27	84	6	75	41	0	5	53	1.23
1369428--1369475	20	2.2	21	82	17	55	50	6	6	37	1.53
1370061--1370129	20	3.5	19	82	5	84	30	15	14	39	1.88
1370097--1370149	19	2.7	19	88	2	70	32	16	15	35	1.90
1370180--1370244	33	2.0	33	87	6	96	35	15	16	32	1.91
1371841--1371875	15	2.3	15	95	0	61	42	0	28	28	1.56
1373624--1373688	19	3.8	18	73	24	68	32	10	16	40	1.84
1373626--1373696	32	2.2	32	94	0	124	32	11	18	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373645--1373669	13	1.9	13	100	0	50	36	16	16	32	1.90
1376109--1376232	54	2.4	51	85	9	162	31	23	12	32	1.92
1376243--1376364	52	2.3	52	80	5	140	31	27	9	31	1.89
1376124--1376395	132	2.1	133	87	2	388	30	26	11	31	1.91
1376377--1376581	79	2.6	79	80	4	218	23	31	17	27	1.97
1380569--1380630	32	2.0	31	93	3	106	35	12	16	35	1.87
1380588--1380612	13	1.9	13	100	0	50	36	16	16	32	1.90
1380569--1380633	18	3.8	18	76	21	77	36	12	15	35	1.85
1380673--1380698	13	2.0	13	100	0	52	30	15	15	38	1.88
1380653--1380719	33	2.0	33	88	0	98	25	14	16	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13