genome.fa.s76.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  2182696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1456 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946243--946301	30	2.0	30	82	0	73	44	13	11	30	1.80
949701--949738	2	19.0	2	100	0	76	50	0	0	50	1.00
951112--951138	4	6.8	4	100	0	54	74	0	0	25	0.83
951620--951646	3	9.0	3	100	0	54	33	33	0	33	1.58
957350--957556	35	5.8	35	72	15	131	36	13	19	30	1.90
957676--957758	35	2.4	34	80	11	96	33	8	19	38	1.82
959748--959772	13	1.9	13	100	0	50	36	16	16	32	1.90
959730--959795	33	2.0	33	93	0	114	36	18	16	28	1.93
968376--968426	20	2.6	20	87	9	70	27	13	17	41	1.87
968499--968523	13	1.9	13	100	0	50	36	16	16	32	1.90
968481--968546	33	2.0	33	84	0	87	39	19	15	25	1.91
975407--975451	20	2.3	20	82	14	51	42	13	22	22	1.88
976320--976436	20	5.8	20	81	6	119	36	11	17	34	1.86
976320--976443	42	3.0	41	80	8	144	36	12	17	33	1.87
977674--977897	58	3.9	57	73	5	166	25	11	13	50	1.74
979033--979159	34	3.8	34	85	8	147	32	24	11	31	1.91
980392--980468	30	2.6	30	87	4	104	25	25	5	42	1.76
982291--982340	19	2.6	19	87	6	66	36	12	10	42	1.76
985058--985110	26	2.0	26	92	0	88	26	30	3	39	1.74
985544--985684	63	2.2	63	93	0	237	36	12	12	38	1.81
986538--986570	8	3.7	9	88	11	50	0	15	0	84	0.61
986538--986579	10	4.2	10	85	8	59	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986538--986571	9	3.7	9	88	7	50	0	14	0	85	0.60
986821--986896	39	1.9	39	86	0	107	44	13	11	30	1.79
987150--987230	12	6.2	12	70	16	54	50	6	2	40	1.40
987188--987242	27	2.0	27	82	6	67	52	5	1	40	1.35
987191--987253	26	2.4	27	81	2	65	57	4	1	36	1.30
987912--987954	21	2.0	21	81	0	50	32	4	9	53	1.53
988430--988458	2	15.0	2	92	7	51	48	0	0	51	1.00
989439--989598	50	3.1	50	68	13	142	49	1	3	45	1.28
989471--989514	23	2.0	21	83	16	54	54	0	2	43	1.12
989471--989514	21	2.0	23	83	16	58	54	0	2	43	1.12
989431--989943	106	4.8	106	76	12	415	44	3	4	48	1.38
989646--989687	14	2.9	14	83	16	50	30	4	0	64	1.14
989535--989773	120	2.0	120	91	1	390	42	5	3	48	1.41
989682--989889	99	2.1	100	88	2	303	46	2	4	46	1.37
989720--989895	50	3.6	47	71	18	135	42	2	4	50	1.37
990424--990467	22	2.0	23	82	13	56	52	0	4	43	1.22
991316--991370	20	2.8	20	100	0	110	36	18	10	34	1.86
991356--991386	13	2.4	13	100	0	62	38	12	16	32	1.86
991336--991402	33	2.0	33	91	5	109	37	17	13	31	1.89
991452--991478	13	2.1	13	100	0	54	40	14	14	29	1.86
991432--991497	33	2.0	33	82	5	80	37	16	15	30	1.90
992069--992154	28	3.4	28	72	24	107	24	30	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992063--992166	48	2.2	48	98	0	199	32	25	9	32	1.88
998612--998645	9	3.8	9	88	11	52	29	26	0	44	1.55
1000221--1000362	20	7.0	20	67	16	78	33	16	15	33	1.91
1000302--1000359	19	3.1	18	80	11	71	31	17	15	36	1.91
1000584--1000631	20	2.4	19	80	16	53	33	2	0	64	1.05
1001183--1001222	2	20.0	2	89	0	62	52	2	0	45	1.14
1004237--1004266	3	10.0	3	92	0	51	33	3	0	63	1.11
1004482--1004518	17	2.2	17	90	0	56	48	0	0	51	1.00
1004656--1004698	20	2.2	20	87	8	61	48	0	0	51	1.00
1004658--1004729	20	3.4	19	72	20	54	45	1	1	51	1.18
1006646--1006680	3	11.7	3	93	0	61	62	34	2	0	1.10
1011519--1011552	16	2.1	16	94	0	59	73	2	0	23	0.97
1011633--1011708	19	3.9	18	70	20	55	51	0	2	46	1.15
1012024--1012095	28	2.5	28	84	11	83	50	1	2	45	1.25
1012199--1012290	48	1.9	47	82	10	116	45	4	0	50	1.21
1016111--1016148	2	19.0	2	100	0	76	50	0	0	50	1.00
1020492--1020563	20	3.6	20	80	0	99	40	11	15	33	1.82
1021689--1021761	27	2.7	27	86	2	92	20	21	34	23	1.97
1026109--1026229	52	2.3	52	97	0	224	28	18	18	34	1.94
1026109--1026249	52	2.7	51	90	4	212	30	17	18	33	1.94
1026238--1026262	13	1.9	13	100	0	50	36	16	16	32	1.90
1026304--1026373	33	2.1	33	89	0	104	40	14	11	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026329--1026353	13	1.9	13	100	0	50	32	16	16	36	1.90
1026411--1026452	21	2.0	21	90	0	66	35	14	14	35	1.86
1027304--1028584	49	26.7	49	85	6	1700	31	17	25	24	1.97
1027587--1027654	21	3.2	21	63	19	50	29	16	27	26	1.97
1027390--1028584	239	5.0	239	94	2	1913	31	17	26	24	1.97
1028798--1029405	27	19.3	28	76	16	292	30	13	37	19	1.90
1028731--1029510	95	8.1	95	86	10	809	30	13	36	19	1.90
1028697--1029569	319	2.7	320	88	7	1245	30	13	36	19	1.90
1029335--1029539	37	5.8	36	85	8	269	32	12	36	19	1.88
1029335--1029541	71	2.9	70	89	3	315	32	12	36	18	1.88
1029519--1029632	31	3.7	31	97	0	210	22	18	32	26	1.97
1030588--1030619	16	2.0	16	93	0	55	0	6	9	84	0.78
1030576--1030618	9	4.9	9	80	5	52	0	9	4	86	0.71
1030578--1030602	10	2.5	10	100	0	50	0	8	0	92	0.40
1033821--1033885	19	3.8	17	75	24	66	36	15	13	33	1.87
1033840--1033864	13	1.9	13	100	0	50	32	16	16	36	1.90
1033821--1033883	32	2.0	32	93	0	108	34	15	14	34	1.88
1034502--1034713	119	1.8	116	81	9	268	40	14	25	20	1.90
1034696--1035436	55	13.0	55	84	8	828	25	19	27	27	1.99
1034696--1035468	110	6.7	116	89	5	976	25	19	27	27	1.99
1041726--1041798	27	2.7	27	86	2	92	20	20	35	23	1.96
1044089--1044133	20	2.2	20	88	8	63	42	8	17	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044160--1044185	13	2.0	13	100	0	52	38	15	15	30	1.88
1044139--1044205	33	2.0	33	88	0	98	43	16	14	25	1.86
1044228--1044290	32	2.0	32	87	0	90	38	14	12	34	1.84
1044330--1044426	21	4.6	22	90	3	130	36	18	10	35	1.85
1044330--1044427	42	2.3	43	85	5	146	35	18	11	34	1.86
1045765--1046119	28	12.6	28	83	3	412	25	17	27	29	1.97
1045776--1046113	169	2.0	170	86	1	473	25	17	27	29	1.97
1047414--1047460	8	5.9	8	85	9	69	0	0	14	85	0.61
1047417--1047455	17	2.4	17	91	4	62	0	0	12	87	0.55
1050360--1050385	13	2.0	13	100	0	52	38	15	15	30	1.88
1050342--1050405	33	2.0	33	90	3	103	43	15	14	26	1.85
1053092--1053143	19	2.7	20	87	6	79	42	15	13	28	1.85
1057191--1057221	15	2.1	15	93	0	53	48	16	22	12	1.80
1059299--1059334	13	2.8	13	95	0	63	33	16	16	33	1.92
1060932--1060974	23	2.0	21	81	9	50	13	9	16	60	1.58
1061854--1061905	19	2.7	20	87	6	79	42	15	13	28	1.85
1066794--1066871	20	3.9	20	85	6	113	30	16	12	39	1.86
1068546--1068574	10	2.7	11	94	5	51	34	10	0	55	1.34
1069250--1069286	19	1.9	19	94	0	65	24	5	18	51	1.67
1073993--1074035	22	2.0	22	86	4	61	74	2	11	11	1.17
1074356--1074479	20	5.8	20	77	15	122	27	16	12	43	1.84
1075237--1075303	37	1.9	35	88	11	102	29	25	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075761--1075786	13	2.0	13	100	0	52	30	15	15	38	1.88
1075825--1075900	21	3.7	21	82	3	109	28	18	11	40	1.86
1075845--1075918	20	3.7	20	81	3	103	31	20	13	35	1.91
1075825--1075918	41	2.3	41	100	0	188	29	19	12	38	1.89
1080697--1080763	37	1.9	35	88	11	102	29	25	11	32	1.92
1081221--1081246	13	2.0	13	100	0	52	30	15	15	38	1.88
1081285--1081360	21	3.7	21	82	3	109	28	18	11	40	1.86
1081305--1081378	20	3.7	20	81	3	103	31	20	13	35	1.91
1081285--1081378	41	2.3	41	100	0	188	29	19	12	38	1.89
1082815--1082843	10	2.7	11	94	5	51	17	0	6	75	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13