genome.fa.s76.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  2182696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1456 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640305--640332	13	2.2	13	100	0	56	28	14	17	39	1.89
640285--640350	33	2.0	33	88	5	98	30	15	13	40	1.85
647817--647891	20	3.8	20	80	7	98	42	10	13	33	1.78
648239--648294	26	2.1	27	83	9	71	64	1	3	30	1.21
649019--649346	61	5.4	61	87	2	414	27	28	17	26	1.97
649328--649505	42	4.2	42	82	7	193	21	22	13	42	1.88
649328--649514	84	2.2	85	85	3	254	22	21	14	40	1.90
649328--649526	42	4.7	43	74	9	151	21	21	14	42	1.88
649484--649639	75	2.1	75	78	7	165	17	25	14	42	1.87
649793--649819	13	2.1	13	100	0	54	74	7	0	18	1.05
652625--652831	79	2.6	79	84	5	276	25	27	13	33	1.93
652814--652997	79	2.4	78	80	7	205	26	27	15	30	1.96
654473--654572	41	2.4	41	98	0	191	31	28	4	37	1.75
656587--656617	8	3.8	8	95	4	53	61	25	0	12	1.32
660093--660153	32	1.9	32	83	6	79	32	16	19	31	1.94
662546--662597	20	2.7	20	82	8	63	28	15	17	38	1.90
662679--662703	13	1.9	13	100	0	50	36	16	16	32	1.90
664338--664398	16	4.0	16	75	12	58	49	1	0	49	1.10
664336--664393	22	2.6	22	81	8	73	50	1	0	48	1.11
664628--664653	13	2.0	13	100	0	52	30	0	0	69	0.89
664608--664800	100	2.0	100	94	4	347	43	4	2	49	1.35
664728--664753	7	3.7	7	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668460--668490	2	15.5	2	100	0	62	51	0	0	48	1.00
668490--668519	2	15.0	2	100	0	60	50	0	50	0	1.00
684287--684329	21	2.0	22	90	4	70	39	0	2	58	1.11
693567--693663	41	2.4	41	94	3	171	31	27	4	36	1.76
699164--699224	32	1.9	32	83	6	79	32	16	19	31	1.94
701615--701666	20	2.7	20	82	8	63	28	15	17	38	1.90
701748--701772	13	1.9	13	100	0	50	36	16	16	32	1.90
703406--703466	16	4.0	16	75	12	58	49	1	0	49	1.10
703404--703461	22	2.6	22	81	8	73	50	1	0	48	1.11
703638--703716	29	2.7	29	79	11	81	43	3	0	53	1.19
703702--703727	7	3.7	7	100	0	52	30	0	0	69	0.89
703673--703747	37	2.1	36	84	2	96	42	2	0	54	1.14
703679--703875	101	2.0	101	98	0	385	44	4	2	48	1.34
703803--703828	7	3.7	7	100	0	52	30	0	0	69	0.89
707545--707572	2	14.0	2	100	0	56	50	0	50	0	1.00
708172--708233	32	1.9	32	86	0	88	50	22	9	17	1.75
716946--717633	60	11.3	61	84	5	820	25	28	19	27	1.98
716946--717641	183	3.8	183	92	1	1112	25	28	19	27	1.99
717626--718008	45	8.7	44	76	11	275	21	26	12	40	1.88
717669--718013	45	7.8	44	77	11	294	20	25	12	41	1.87
717666--717984	88	3.6	87	76	12	310	20	26	11	41	1.86
717643--717984	134	2.6	132	81	6	406	19	27	10	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718700--718729	13	2.3	13	100	0	60	30	16	13	40	1.87
718745--718852	20	5.8	19	75	18	93	29	15	12	41	1.85
718765--718827	33	1.9	33	100	0	126	28	15	15	39	1.89
720031--720096	28	2.4	28	84	0	87	25	36	13	24	1.92
720201--720353	51	3.0	50	81	7	173	31	22	8	37	1.84
721614--721721	51	2.1	51	85	0	153	27	23	12	37	1.90
722084--722170	20	4.7	20	73	23	82	28	17	12	41	1.86
722084--722151	33	2.1	33	88	5	102	29	16	13	41	1.86
724448--724626	51	3.5	51	84	3	211	28	26	10	34	1.90
724565--724978	79	5.3	79	81	6	475	26	25	14	33	1.94
725973--726042	28	2.5	28	82	13	92	28	34	12	24	1.92
725948--726195	106	2.3	107	78	4	270	29	25	13	31	1.93
726135--726297	51	3.2	50	79	12	172	32	23	7	36	1.84
727085--727109	13	1.9	13	100	0	50	32	20	16	32	1.94
727157--727181	13	1.9	13	100	0	50	36	16	16	32	1.90
728880--728994	53	2.1	54	85	4	153	38	22	13	26	1.90
729018--729059	16	2.6	16	92	0	66	45	30	11	11	1.77
730392--730433	17	2.4	17	84	11	50	59	9	0	30	1.29
730401--730439	18	2.1	19	85	4	53	61	7	0	30	1.24
731029--731079	16	3.2	17	75	10	54	54	1	9	33	1.44
731029--731089	32	1.9	32	83	6	79	54	3	9	32	1.50
732767--732821	28	2.0	28	88	0	83	36	1	10	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734521--734569	16	3.1	16	81	0	62	22	12	22	42	1.86
734548--734632	31	2.7	32	74	3	91	23	12	18	44	1.85
734569--734624	16	3.6	16	73	4	51	23	8	17	50	1.74
736854--736895	16	2.6	16	88	7	59	50	2	0	47	1.14
740797--740830	1	34.0	1	87	0	50	2	94	0	2	0.38
741731--741784	21	2.5	22	79	8	58	33	7	5	53	1.52
741771--741866	21	4.7	21	78	10	90	32	3	7	57	1.42
741772--741866	40	2.3	41	82	7	104	32	3	7	56	1.43
742255--742391	41	3.3	41	71	15	138	31	8	12	47	1.72
742210--742381	82	2.1	81	94	1	299	31	8	11	48	1.69
742210--742412	82	2.5	81	87	6	275	33	6	10	48	1.65
742373--742431	12	5.4	11	76	15	59	37	0	8	54	1.31
742482--742533	20	2.7	20	78	3	52	26	5	3	63	1.34
742544--742594	21	2.4	21	93	0	84	29	5	13	50	1.65
742515--742635	42	2.9	42	76	4	100	32	5	12	49	1.64
742516--742650	21	6.4	21	74	3	83	31	5	13	48	1.66
743031--743074	21	2.1	21	83	8	54	25	0	4	70	1.06
743061--743107	21	2.2	21	85	7	60	31	2	6	59	1.34
743776--743817	21	2.0	21	81	9	50	50	2	4	42	1.36
746586--746616	12	2.6	12	94	0	53	51	6	0	41	1.27
748392--748468	40	1.9	39	82	7	93	45	0	5	49	1.24
748444--748496	13	4.0	13	81	13	63	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748435--748490	27	2.1	27	86	6	78	55	0	1	42	1.10
748442--748553	13	7.9	14	68	14	61	51	0	0	46	1.13
748442--748501	14	4.0	15	78	10	52	51	0	0	48	1.00
748426--748566	70	2.0	69	81	10	162	51	0	1	46	1.15
749094--749142	25	2.0	23	84	7	62	61	0	0	38	0.96
749171--749383	118	1.8	118	79	6	252	47	7	3	40	1.51
749455--749502	23	2.0	25	88	8	73	70	2	0	27	0.98
749579--749632	26	2.0	27	89	3	83	46	0	7	46	1.31
751364--751425	30	2.1	30	100	0	124	22	29	16	32	1.95
757358--757467	52	2.1	51	85	5	141	42	13	15	28	1.85
758711--758997	79	3.6	79	90	1	432	30	16	27	25	1.97
758950--759051	27	3.7	27	88	3	134	24	17	33	24	1.96
759027--759147	52	2.3	52	90	1	190	31	7	28	32	1.85
761536--761575	21	1.9	21	94	0	71	25	20	7	47	1.75
761592--761703	13	7.5	13	75	24	98	34	16	13	34	1.88
761592--761722	32	4.2	31	98	1	230	35	16	12	34	1.87
761692--761753	19	3.0	21	86	6	74	40	12	12	33	1.82
762494--762717	42	5.2	42	73	11	150	39	12	27	20	1.89
762700--763520	55	15.0	54	78	10	696	22	20	29	26	1.99
762863--763005	26	5.3	26	65	15	92	20	20	31	26	1.98
762700--763551	165	5.1	166	82	10	962	23	20	29	26	1.99
763033--763151	62	1.9	62	89	3	186	23	19	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762978--763518	211	2.5	205	81	9	570	22	20	29	26	1.98
776881--777136	79	3.2	79	83	2	343	30	15	27	26	1.96
777067--777199	52	2.6	52	87	3	196	30	11	27	30	1.91
779555--779580	13	2.0	13	100	0	52	38	15	15	30	1.88
779567--779608	21	2.0	21	100	0	84	28	19	9	42	1.82
779625--779674	13	3.5	13	80	19	64	34	18	14	34	1.90
779633--779694	17	3.8	17	76	23	78	37	16	12	33	1.87
779625--779693	30	2.2	31	94	5	122	36	17	13	33	1.88
779663--779724	19	3.0	21	83	6	65	40	11	12	35	1.80
782140--782640	155	3.3	150	77	9	478	38	17	16	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13