genome.fa.s76.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  2182696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1456 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1862910--1862935	13	2.0	13	100	0	52	30	15	15	38	1.88
1863056--1863101	21	2.2	20	81	11	58	32	19	4	43	1.71
1865479--1865504	13	2.0	13	100	0	52	38	15	15	30	1.88
1867636--1867707	31	2.3	32	90	9	121	34	12	18	34	1.88
1867724--1867765	21	2.0	21	100	0	84	42	9	19	28	1.82
1867752--1867777	13	2.0	13	100	0	52	30	15	15	38	1.88
1870152--1870531	52	7.3	52	69	10	202	29	27	11	31	1.91
1870313--1870534	51	4.3	51	81	7	236	30	27	10	32	1.90
1870152--1870638	262	1.9	262	93	0	848	28	27	12	31	1.93
1870546--1870748	79	2.6	79	80	3	221	24	27	15	32	1.96
1873325--1873607	153	1.8	153	79	3	327	28	14	16	39	1.88
1877791--1878002	112	1.9	112	88	3	320	31	12	14	41	1.83
1880334--1880410	21	3.7	21	89	3	111	35	12	16	35	1.88
1880446--1880513	19	3.9	19	78	21	85	35	11	14	38	1.83
1880467--1880491	13	1.9	13	100	0	50	36	16	16	32	1.90
1880448--1880510	32	2.0	32	96	0	117	34	12	15	36	1.86
1880533--1880599	33	2.0	33	85	0	89	26	14	14	43	1.85
1882664--1883026	52	6.9	51	71	10	223	30	24	11	33	1.91
1882770--1882844	27	2.7	27	89	6	107	25	33	18	22	1.97
1882866--1883049	52	3.6	50	78	6	179	30	25	10	33	1.89
1883039--1883108	28	2.5	28	88	0	95	22	35	17	24	1.95
1882659--1883157	263	1.9	263	89	2	770	29	26	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883062--1883262	78	2.6	79	83	2	235	24	28	16	29	1.97
1891594--1891642	20	2.4	22	83	12	61	32	16	0	51	1.45
1895209--1895410	52	3.9	52	88	3	298	31	16	17	34	1.93
1895399--1895423	13	1.9	13	100	0	50	36	16	16	32	1.90
1895486--1895510	13	1.9	13	100	0	50	32	16	16	36	1.90
1897358--1898436	65	16.7	63	74	10	463	18	20	14	46	1.84
1897375--1898462	130	8.4	129	74	8	664	18	20	14	46	1.84
1897381--1898437	195	5.5	193	74	6	789	18	20	14	46	1.84
1897954--1898053	31	3.1	31	70	13	94	16	21	17	46	1.85
1898225--1898496	65	4.1	66	77	10	227	18	20	13	46	1.83
1899092--1899130	20	1.9	21	94	5	71	35	23	15	25	1.94
1899138--1899204	19	3.5	19	93	2	107	29	16	17	35	1.92
1899233--1899278	20	2.3	20	88	7	67	30	10	19	39	1.86
1904904--1904968	20	3.6	20	65	26	63	32	16	10	40	1.84
1904904--1904969	33	2.0	33	93	0	114	31	16	10	40	1.83
1906816--1906867	20	2.3	23	87	12	74	42	5	19	32	1.75
1907497--1907533	19	1.9	19	100	0	74	27	16	16	40	1.89
1907583--1907647	33	2.0	33	84	6	87	36	13	15	33	1.87
1910690--1910719	13	2.3	13	94	0	51	40	13	13	33	1.83
1910723--1910862	63	2.2	63	100	0	280	31	14	18	35	1.91
1910896--1910934	20	1.9	21	94	5	71	20	20	20	38	1.94
1913151--1913202	13	4.5	13	68	26	53	34	13	15	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915029--1918981	790	5.0	790	96	0	7068	36	15	21	26	1.93
1919507--1919533	13	2.1	13	100	0	54	40	14	14	29	1.86
1919579--1919633	19	2.8	19	77	2	65	32	18	10	38	1.85
1932044--1932125	43	1.9	43	87	0	119	25	12	30	31	1.92
1932127--1932215	43	2.0	44	82	2	108	28	16	26	28	1.97
1932073--1932467	95	4.1	95	75	8	355	30	14	26	28	1.95
1932348--1932415	22	3.1	22	64	19	52	33	16	25	25	1.95
1932324--1932558	52	5.1	43	72	18	166	34	16	22	26	1.95
1932373--1932521	52	2.9	52	86	1	201	34	16	24	24	1.95
1932477--1932556	42	1.9	42	92	0	133	30	22	23	23	1.99
1932610--1932705	32	3.0	31	82	7	88	22	18	30	28	1.98
1932628--1932754	32	4.0	32	79	8	141	24	18	29	27	1.98
1932935--1932996	28	2.2	28	88	0	88	29	19	25	25	1.99
1934337--1934384	21	2.3	20	82	10	60	2	4	14	79	0.98
1934338--1934398	32	1.9	32	83	6	79	3	1	14	80	0.92
1934370--1934405	18	2.0	18	88	0	54	8	0	5	86	0.72
1945623--1945680	19	3.0	20	80	7	75	36	17	13	32	1.89
1945645--1945709	33	2.0	33	88	8	98	41	15	12	30	1.84
1948005--1948054	21	2.4	21	83	9	59	48	0	20	32	1.50
1948012--1948054	21	2.0	22	86	4	61	51	0	20	27	1.48
1954253--1954303	20	2.6	19	87	12	68	33	17	15	33	1.92
1954335--1954387	20	2.7	20	85	2	72	37	20	13	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1954376--1954400	13	1.9	13	100	0	50	32	16	16	36	1.90
1954358--1954421	33	2.0	32	87	9	94	39	15	15	29	1.89
1958836--1959264	154	2.8	154	79	6	413	27	14	19	38	1.90
1963474--1963576	20	4.8	20	74	20	82	35	19	12	32	1.89
1963469--1963562	49	1.9	49	100	0	188	34	19	12	34	1.89
1963523--1963576	19	2.8	20	88	2	74	38	18	12	29	1.88
1964173--1964261	31	2.8	32	93	3	146	37	21	6	34	1.80
1966118--1966156	13	3.0	13	92	0	69	41	15	12	30	1.85
1975073--1975125	20	2.6	21	91	5	83	35	13	13	37	1.83
1975158--1975211	20	2.7	20	82	0	63	38	7	16	37	1.77
1976717--1976970	103	2.5	103	83	3	291	32	14	27	25	1.95
1978492--1978536	17	2.6	17	73	13	56	55	8	11	24	1.63
1979260--1979331	21	3.5	20	85	9	83	41	16	12	29	1.85
1979370--1979419	19	2.6	19	87	3	64	30	16	14	40	1.87
1983346--1983713	49	7.8	48	79	6	276	31	17	25	25	1.97
1983346--1983673	98	3.4	97	81	4	319	32	17	25	24	1.97
1983722--1984062	29	11.9	29	80	7	241	20	18	29	31	1.96
1983735--1984064	57	5.8	56	81	7	369	20	17	30	31	1.95
1983737--1984067	114	2.9	114	90	2	479	20	17	31	31	1.95
1985494--1985556	10	6.3	10	78	12	67	3	0	11	85	0.70
1986618--1986644	13	2.1	13	100	0	54	40	14	14	29	1.86
1986599--1986663	32	2.0	32	90	3	103	40	16	16	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1987190--1987265	40	1.9	40	88	0	116	35	28	2	32	1.71
1989122--1989148	13	2.1	13	100	0	54	37	18	14	29	1.91
1989911--1989936	13	2.0	13	100	0	52	30	15	15	38	1.88
1989890--1989954	32	2.0	33	93	6	114	27	12	15	44	1.82
1989890--1989954	19	3.6	19	73	26	70	27	12	15	44	1.82
1992486--1992523	13	2.9	13	96	0	67	31	15	18	34	1.92
1994588--1994618	15	2.1	15	93	0	53	12	22	16	48	1.80
1998687--1998712	13	2.0	13	100	0	52	30	15	15	38	1.88
1998666--1998730	32	2.0	33	93	6	114	27	12	15	44	1.82
1998666--1998730	19	3.6	19	73	26	70	27	12	15	44	1.82
2005058--2005087	3	10.0	3	92	0	51	33	36	0	30	1.58
2006672--2006724	20	2.7	20	88	11	74	30	18	13	37	1.89
2006754--2006806	19	2.7	20	91	2	81	39	18	16	24	1.91
2016890--2016914	13	1.9	13	100	0	50	36	16	16	32	1.90
2016870--2016936	33	2.0	33	88	0	98	32	11	14	40	1.83
2025897--2025961	35	2.0	33	88	11	98	30	24	12	32	1.92
2026424--2026479	21	2.6	22	94	5	105	37	10	25	26	1.88
2026467--2026497	10	3.1	10	90	0	53	41	6	29	22	1.78
2026521--2026557	19	2.0	19	94	5	67	27	10	16	45	1.80
2026521--2026657	53	2.6	53	94	1	238	26	17	18	37	1.93
2026737--2026777	21	2.0	21	85	9	57	39	9	12	39	1.76
2027510--2027566	10	5.9	10	79	6	55	84	3	12	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2027510--2027563	17	3.2	16	84	10	63	85	3	11	0	0.73
2027529--2027558	9	3.4	9	90	9	53	83	0	16	0	0.65
2028537--2029228	61	11.3	61	84	2	807	26	25	18	28	1.98
2029257--2029428	42	4.3	42	79	9	157	22	22	14	41	1.89
2029371--2029502	34	3.7	34	75	11	120	21	24	15	38	1.92
2029257--2029472	42	5.4	39	72	14	131	22	22	14	40	1.90
2029366--2029525	74	2.2	73	75	7	164	20	27	13	39	1.89
2030098--2030136	20	2.0	20	89	0	60	23	15	15	46	1.83
2030119--2030212	30	3.5	29	67	27	89	25	17	17	40	1.90
2030099--2030233	50	2.7	49	90	2	207	25	17	14	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13