genome.fa.s84.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  12  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813212--1813334	34	3.9	29	74	20	104	44	4	30	20	1.70
1814518--1814789	79	3.5	79	87	1	411	29	24	12	33	1.93
1820963--1821509	55	9.4	60	81	11	572	26	29	20	24	1.99
1820993--1821507	116	4.4	115	86	8	645	26	29	20	23	1.99
1820993--1822045	171	6.3	169	74	15	885	26	29	20	24	1.99
1821523--1821835	55	5.5	55	81	9	324	26	26	20	26	1.99
1821202--1822045	328	2.6	323	83	7	1050	26	29	20	24	1.99
1821851--1822045	55	3.5	54	83	10	248	26	30	20	22	1.98
1821912--1822194	149	1.9	151	88	5	439	26	29	19	24	1.99
1822066--1822254	55	3.4	54	86	5	243	28	27	20	23	1.99
1821669--1822468	209	3.8	204	86	6	1016	25	28	19	26	1.99
1822120--1822409	155	1.9	155	89	3	460	25	26	20	27	1.99
1822294--1822468	61	2.9	61	82	9	223	25	25	20	28	1.99
1823167--1823301	14	11.2	14	60	30	53	41	5	32	20	1.76
1823164--1823361	35	5.7	35	98	0	380	43	5	31	19	1.73
1823187--1823322	21	7.5	21	64	30	98	43	5	30	19	1.75
1831946--1831993	13	4.2	13	70	29	54	37	18	12	31	1.88
1831946--1832014	33	2.1	32	86	10	95	37	20	11	30	1.88
1831976--1832013	20	1.9	20	88	0	58	39	21	10	28	1.86
1832043--1832115	20	3.7	19	85	7	76	38	17	15	28	1.90
1835853--1835907	20	2.8	19	88	5	74	41	16	12	29	1.85
1835978--1836003	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835960--1836023	32	2.0	33	87	3	94	40	17	14	28	1.88
1839571--1840126	49	11.8	49	75	9	379	31	18	25	25	1.98
1839813--1839891	39	2.0	39	90	0	122	25	20	25	29	1.99
1839852--1840108	48	5.5	49	77	11	182	29	21	24	24	1.99
1839715--1840118	136	3.0	135	84	1	513	29	19	25	25	1.98
1839902--1840070	87	1.9	87	83	2	214	27	21	26	24	1.99
1839988--1840124	48	2.9	47	87	2	193	29	18	25	25	1.98
1840123--1841142	34	31.8	32	75	11	758	36	12	30	20	1.90
1840295--1840435	27	5.0	27	83	11	174	29	12	35	21	1.91
1840315--1841113	61	12.5	61	73	15	450	36	12	30	20	1.90
1840289--1840531	27	8.2	27	70	19	82	33	12	32	20	1.90
1840764--1840821	27	2.1	27	87	3	80	27	12	34	25	1.91
1840805--1841144	33	10.5	30	71	17	124	37	12	29	20	1.90
1840241--1841116	322	2.8	319	83	7	990	36	12	30	20	1.89
1840618--1841144	32	16.3	29	73	16	133	37	12	30	19	1.89
1841059--1841368	30	10.0	30	80	6	271	30	15	31	22	1.95
1841021--1841361	32	10.9	31	81	10	320	31	15	30	22	1.95
1841024--1841361	62	5.4	61	86	5	360	31	15	30	22	1.95
1846241--1846265	13	1.9	13	100	0	50	36	16	16	32	1.90
1846218--1846285	33	2.1	32	88	2	100	35	14	14	35	1.87
1846339--1846388	20	2.5	20	90	0	73	40	16	14	30	1.87
1846943--1846981	19	2.1	19	100	0	78	41	15	5	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848651--1848691	22	2.0	21	86	13	59	41	4	21	31	1.74
1848823--1848861	13	3.0	13	88	0	51	38	15	12	33	1.85
1851082--1851107	13	2.0	13	100	0	52	38	15	15	30	1.88
1853041--1853085	21	2.1	21	84	8	56	53	4	20	22	1.63
1854889--1854927	15	2.6	15	87	0	51	53	15	17	12	1.72
1856995--1857031	13	3.0	13	88	11	60	32	13	16	37	1.87
1857152--1857197	21	2.2	20	81	11	58	32	19	4	43	1.71
1859586--1859611	13	2.0	13	100	0	52	38	15	15	30	1.88
1859666--1859704	20	1.9	21	94	5	71	43	10	10	35	1.73
1860611--1860651	15	2.7	15	84	3	55	17	19	17	46	1.85
1864616--1864658	20	2.1	20	86	4	59	9	30	44	16	1.79
1871271--1871296	13	2.0	13	100	0	52	30	15	15	38	1.88
1871250--1871314	32	2.0	33	93	6	114	27	12	15	44	1.82
1871250--1871314	19	3.6	19	73	26	70	27	12	15	44	1.82
1874553--1874603	20	2.6	20	90	3	77	29	13	17	39	1.88
1883710--1883742	16	1.9	18	88	11	52	48	0	3	48	1.17
1885722--1885763	14	2.9	14	80	16	50	52	0	0	47	1.00
1885718--1885790	15	4.9	15	70	14	53	46	1	0	52	1.09
1887463--1887540	29	2.7	28	78	5	93	33	2	0	64	1.08
1887462--1887563	30	3.3	30	75	18	91	36	1	0	61	1.07
1887613--1887650	18	2.1	18	90	5	58	57	0	0	42	0.98
1892835--1892898	28	2.2	29	86	5	94	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1892851--1892935	33	2.8	32	86	12	108	45	1	0	52	1.08
1894399--1894697	97	3.1	95	79	10	302	40	10	21	28	1.85
1894414--1894656	98	2.5	97	84	6	303	43	9	18	29	1.80
1896693--1896761	36	1.9	35	91	2	111	26	26	11	36	1.90
1898159--1898275	51	2.3	50	78	7	128	30	11	29	29	1.91
1898261--1898332	28	2.6	29	84	4	94	26	15	31	26	1.95
1898317--1898483	49	3.4	49	82	7	205	29	13	28	28	1.94
1898317--1898482	48	3.4	49	84	6	185	30	13	28	27	1.94
1898416--1898635	79	2.8	77	82	4	282	30	14	28	26	1.95
1900993--1901046	20	2.7	20	88	0	72	42	14	18	24	1.88
1901472--1901544	24	3.0	24	85	0	83	39	8	24	27	1.84
1901606--1901670	33	2.0	33	87	3	96	43	10	15	30	1.81
1905727--1905793	33	2.0	33	88	11	102	34	17	11	35	1.87
1905755--1905792	20	1.9	20	94	0	67	39	18	10	31	1.85
1905747--1905772	13	2.0	13	100	0	52	38	15	15	30	1.88
1905844--1905870	13	2.1	13	100	0	54	40	14	14	29	1.86
1905823--1905866	21	2.1	21	91	0	70	31	13	18	36	1.90
1907134--1907161	13	2.2	13	100	0	56	39	17	14	28	1.89
1909141--1909181	21	2.0	20	86	9	57	46	2	24	26	1.65
1912569--1912594	13	2.0	13	100	0	52	30	15	15	38	1.88
1912550--1912612	33	1.9	32	87	9	92	28	15	15	39	1.89
1912685--1912709	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912667--1912732	33	2.0	33	90	0	105	36	16	16	30	1.91
1915172--1915209	13	3.0	12	88	11	58	31	15	18	34	1.92
1922471--1922620	52	2.9	52	97	0	282	27	17	18	36	1.93
1922471--1922672	104	1.9	103	81	7	239	28	16	17	37	1.92
1922641--1922738	19	5.8	18	71	28	90	36	17	12	33	1.87
1922636--1922736	32	3.1	32	97	1	184	35	17	11	34	1.87
1922660--1922716	13	3.9	13	76	24	60	33	17	14	35	1.90
1925149--1925247	33	3.0	33	98	0	189	37	15	15	32	1.88
1925180--1925244	20	3.6	20	67	26	63	35	15	15	33	1.89
1926964--1927014	19	2.6	20	87	3	68	43	15	11	29	1.82
1927901--1927954	20	2.7	20	82	2	63	37	14	7	40	1.74
1928562--1928601	20	2.0	21	90	5	64	67	0	7	25	1.16
1928561--1928612	20	2.7	19	75	19	54	67	0	7	25	1.17
1933750--1933855	52	2.0	52	92	0	176	33	18	12	35	1.88
1936583--1936946	79	4.6	79	75	8	312	35	11	23	29	1.90
1936878--1936998	52	2.3	51	81	5	136	34	10	24	29	1.89
1940009--1940265	42	6.3	41	70	15	124	44	11	26	18	1.83
1940041--1940254	119	1.8	117	83	5	288	44	12	25	17	1.84
1940161--1940889	45	17.1	44	74	12	426	42	12	25	19	1.86
1940158--1940856	86	8.2	86	75	11	534	43	12	25	19	1.85
1940279--1940809	124	4.2	126	76	10	361	43	12	25	19	1.85
1940229--1940858	254	2.5	251	80	7	704	42	12	25	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940655--1940791	44	3.4	38	77	16	141	37	16	25	21	1.93
1940865--1941442	62	9.4	61	79	6	495	29	18	24	26	1.98
1940866--1941446	124	4.7	125	80	4	583	29	18	25	26	1.98
1940891--1941418	186	2.8	185	82	3	605	30	18	24	26	1.98
1947690--1947756	33	2.0	33	88	0	98	34	11	13	40	1.81
1947710--1947734	13	1.9	13	100	0	50	36	16	16	32	1.90
1947798--1947822	13	1.9	13	100	0	50	32	16	16	36	1.90
1955043--1955079	11	3.4	11	84	0	56	89	5	5	0	0.60
1956039--1956214	31	5.7	31	85	6	205	25	30	17	27	1.97
1956036--1956348	93	3.3	93	79	10	271	23	32	14	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13