genome.fa.s84.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966790--966815	13	2.0	13	100	0	52	38	15	15	30	1.88
969753--969780	13	2.2	13	100	0	56	39	17	14	28	1.89
969735--969800	33	2.0	33	85	5	89	42	13	13	30	1.83
969834--969894	19	3.5	19	70	25	71	37	19	11	31	1.87
969819--969896	32	2.4	32	93	0	129	35	17	12	33	1.88
970459--970501	20	2.2	20	86	0	59	37	4	27	30	1.77
971034--971078	20	2.3	20	88	3	65	24	15	13	46	1.82
971454--971479	13	2.0	13	100	0	52	30	15	15	38	1.88
973850--973993	76	1.9	78	88	4	220	27	27	13	31	1.94
973925--974095	51	3.4	51	95	0	297	30	28	11	29	1.91
984391--984458	6	11.5	6	77	13	61	83	13	2	0	0.75
984391--984465	18	4.2	18	80	8	73	84	12	4	0	0.76
984402--984454	10	5.0	10	78	17	54	84	11	3	0	0.73
984391--984465	16	4.6	16	77	15	73	84	12	4	0	0.76
984393--984465	19	3.7	19	80	9	76	83	12	4	0	0.78
985462--985600	26	5.0	29	65	16	105	28	30	20	20	1.98
985431--986069	55	11.4	53	85	7	724	27	27	20	24	1.99
985428--986069	227	2.9	220	82	9	814	27	28	20	24	1.99
988724--988837	51	2.2	51	88	0	183	31	28	9	30	1.89
988643--988886	130	1.9	127	85	5	339	27	26	13	32	1.93
988647--988917	130	2.1	127	82	6	332	28	25	12	33	1.92
991247--991298	20	2.5	20	87	3	68	30	19	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002938--1002976	19	2.1	19	95	0	69	12	0	5	82	0.83
1002929--1002977	12	4.4	11	80	12	55	14	0	4	81	0.83
1006344--1006378	15	2.2	17	90	10	56	57	0	0	42	0.99
1008937--1008995	29	2.1	29	87	3	84	35	10	22	32	1.87
1009087--1009116	6	5.0	6	100	0	60	83	0	0	16	0.65
1016356--1016381	13	2.0	13	100	0	52	30	15	15	38	1.88
1016336--1016399	32	2.0	33	87	3	94	28	14	17	40	1.88
1016420--1016472	20	2.6	21	87	3	72	30	16	13	39	1.87
1017079--1017122	21	2.1	21	83	8	54	25	31	4	38	1.76
1018933--1018957	13	1.9	13	100	0	50	36	16	16	32	1.90
1021009--1021039	15	2.1	15	93	0	53	12	22	16	48	1.80
1022113--1022318	80	2.6	80	82	3	209	31	16	28	24	1.96
1022273--1022336	28	2.3	28	83	0	74	25	18	34	21	1.96
1022333--1022669	52	6.4	52	71	12	204	31	12	26	30	1.92
1022332--1022670	105	3.2	105	72	10	321	31	12	26	30	1.92
1022266--1022670	213	1.9	212	89	1	623	31	13	27	28	1.94
1022490--1022560	27	2.6	27	86	2	88	23	21	30	23	1.99
1025013--1025067	20	2.8	20	82	0	74	45	16	14	23	1.84
1025087--1025154	19	3.9	18	76	23	83	38	14	11	35	1.83
1025109--1025133	13	1.9	13	100	0	50	32	16	16	36	1.90
1025090--1025152	32	2.0	32	96	0	117	36	15	12	34	1.86
1025190--1025267	21	3.8	21	86	8	115	32	12	16	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025190--1025271	41	2.0	40	88	6	121	32	12	17	37	1.86
1025943--1026680	55	13.3	55	90	4	1114	21	20	29	28	1.98
1026270--1026410	28	5.1	27	62	15	65	21	19	31	28	1.97
1040113--1040297	80	2.3	80	81	1	192	33	15	27	23	1.95
1040252--1040323	28	2.6	28	88	0	99	23	19	34	22	1.96
1040311--1040649	105	3.2	105	72	10	330	31	12	26	30	1.92
1040245--1040651	213	1.9	212	89	1	636	31	13	27	28	1.94
1040469--1040537	27	2.5	27	85	2	84	24	21	28	24	1.99
1040312--1040646	52	6.4	51	70	12	194	31	12	25	30	1.92
1043015--1043040	13	2.0	13	100	0	52	38	15	15	30	1.88
1042994--1043060	33	2.0	33	88	0	98	43	16	14	25	1.86
1043080--1043147	19	3.9	18	76	23	83	38	14	11	35	1.83
1043102--1043126	13	1.9	13	100	0	50	32	16	16	36	1.90
1043083--1043145	32	2.0	32	96	0	117	36	15	12	34	1.86
1043183--1043260	21	3.8	21	86	8	115	32	12	16	38	1.87
1043183--1043264	41	2.0	40	88	6	121	32	12	17	37	1.86
1045106--1045150	21	2.1	21	84	8	56	22	20	4	53	1.63
1047371--1047396	13	2.0	13	100	0	52	30	15	15	38	1.88
1047351--1047414	32	2.0	33	87	3	94	28	14	17	40	1.88
1050177--1050245	33	2.1	34	88	2	104	26	15	17	40	1.89
1054320--1054387	23	2.9	23	71	18	59	32	2	1	63	1.18
1054935--1054983	20	2.5	20	90	6	73	24	2	14	59	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054945--1054989	21	2.2	20	84	4	54	26	6	13	53	1.64
1059623--1059693	27	2.6	27	100	0	142	12	22	45	19	1.84
1062819--1063143	49	6.7	49	75	12	269	31	18	25	24	1.97
1062868--1063230	87	4.0	88	85	5	406	30	18	25	25	1.98
1062719--1063233	52	10.8	49	73	12	367	31	18	25	24	1.97
1063020--1063177	39	3.8	39	77	14	172	25	20	27	25	1.99
1063056--1063233	48	3.9	48	79	12	221	29	19	26	24	1.98
1063234--1063296	32	2.0	32	83	0	81	39	11	28	20	1.87
1063292--1063406	57	2.0	57	88	5	169	26	17	27	28	1.97
1063292--1063406	29	4.0	29	86	5	171	26	17	27	28	1.97
1064847--1064955	10	10.8	10	74	8	96	0	2	13	82	0.83
1064838--1064956	30	4.0	29	78	18	120	0	2	15	81	0.84
1064838--1064956	46	2.6	47	84	9	149	0	2	15	81	0.84
1064850--1064955	1	106.0	1	65	0	50	0	2	13	83	0.82
1078911--1078938	13	2.2	13	100	0	56	39	17	14	28	1.89
1079884--1079946	32	1.9	33	87	3	92	39	12	17	30	1.87
1080581--1080657	38	2.0	40	82	5	95	36	25	0	37	1.57
1080623--1080687	24	2.8	24	90	2	96	33	27	0	38	1.57
1080601--1080728	64	2.0	63	86	7	177	31	27	0	41	1.56
1080652--1080755	42	2.5	43	90	6	162	25	28	0	45	1.60
1081690--1081868	68	2.6	67	91	2	277	37	8	19	33	1.83
1081901--1082250	194	1.8	194	85	2	497	33	12	24	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081901--1082256	97	3.7	95	86	1	451	33	12	24	29	1.92
1083539--1083580	19	2.2	19	83	8	50	2	11	38	47	1.53
1085121--1085286	62	2.7	62	84	2	201	33	15	26	25	1.95
1085121--1085395	61	4.5	62	77	6	213	35	14	25	25	1.93
1085160--1085389	62	3.8	62	78	8	202	37	13	24	23	1.92
1085473--1085678	32	6.7	31	75	10	131	23	18	30	27	1.98
1085571--1085625	26	2.0	28	86	6	78	23	20	29	27	1.99
1085566--1085619	28	2.0	29	82	10	69	24	20	31	24	1.98
1085624--1085927	30	10.4	30	81	3	327	20	15	32	31	1.94
1085650--1086576	58	15.9	57	72	13	374	20	18	31	30	1.96
1085624--1085927	29	10.4	28	81	6	320	20	15	32	31	1.94
1085949--1086016	30	2.2	30	84	2	82	11	17	35	35	1.87
1086027--1086571	30	18.3	29	75	12	356	20	19	30	29	1.97
1086037--1086499	61	7.7	59	76	12	312	20	19	30	28	1.97
1086027--1086571	61	9.1	58	75	11	164	20	19	30	29	1.97
1086071--1086571	89	5.6	88	71	15	246	20	19	30	29	1.97
1087578--1087611	13	2.5	14	90	4	52	0	20	0	79	0.73
1087868--1087958	22	4.2	23	74	17	72	6	10	9	72	1.27
1087868--1087958	44	2.1	43	84	10	114	6	10	9	72	1.27
1090952--1091258	165	1.9	163	83	5	404	38	11	21	29	1.88
1091004--1091161	68	2.3	68	87	2	235	37	10	21	30	1.88
1091111--1091579	97	4.9	97	83	3	597	33	11	24	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091111--1091565	96	4.7	98	84	3	600	34	11	24	29	1.91
1091119--1091563	193	2.3	192	87	5	623	33	11	24	30	1.91
1093778--1093826	8	5.9	8	81	13	55	12	2	10	75	1.13
1093758--1093817	9	6.7	9	78	14	61	16	1	6	75	1.10
1093778--1093817	17	2.3	18	91	4	64	10	2	10	77	1.08
1093759--1093817	27	2.1	28	84	9	77	15	1	6	76	1.07
1098552--1099025	164	2.9	164	86	4	641	38	12	8	41	1.73
1103217--1103244	12	2.3	12	100	0	56	35	14	17	32	1.90
1110324--1110715	79	5.0	79	76	5	330	36	11	23	28	1.90
1110325--1110718	158	2.5	156	78	6	380	36	12	23	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13