genome.fa.s84.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288889--288960	28	2.6	28	84	4	92	23	19	34	22	1.96
288948--289168	51	4.3	50	80	7	203	33	11	25	29	1.91
289154--289226	27	2.7	27	82	2	83	20	21	34	23	1.97
288949--289333	51	7.3	52	71	12	180	31	12	25	30	1.93
291682--291712	13	2.5	13	94	5	55	38	16	16	29	1.90
291666--291732	33	2.0	33	91	0	107	44	14	14	25	1.84
291836--291912	21	3.7	21	89	3	111	35	16	12	35	1.88
292159--292227	32	2.2	32	89	0	102	40	15	8	34	1.79
292963--296807	101	39.3	101	88	5	5352	31	18	26	23	1.97
292963--296807	294	13.1	295	90	4	5247	31	18	26	23	1.97
292966--296720	977	3.8	974	93	2	5910	31	18	25	23	1.97
296820--296886	33	2.0	33	91	0	107	19	14	34	31	1.92
296925--297050	30	4.0	33	82	10	120	30	14	34	21	1.93
296961--297134	61	2.9	61	79	5	174	27	16	30	25	1.97
296955--297139	31	6.1	30	76	7	167	30	15	30	23	1.96
298424--298460	10	3.5	11	82	10	51	0	0	21	78	0.75
301441--301472	14	2.3	14	100	0	64	43	28	15	12	1.83
302277--302301	13	1.9	13	100	0	50	36	16	16	32	1.90
302257--302322	33	2.0	33	91	2	107	34	10	15	39	1.82
302342--302366	13	1.9	13	100	0	50	32	16	16	36	1.90
302375--302503	52	2.5	52	92	2	215	35	18	16	29	1.93
307745--307769	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307824--307886	19	3.6	19	74	24	75	39	17	11	31	1.85
307814--307884	32	2.2	32	94	0	124	38	18	11	32	1.86
308267--308313	25	1.9	24	83	12	60	40	2	8	48	1.45
311985--312015	11	2.8	11	95	0	53	25	0	3	70	1.02
311877--312233	152	2.4	152	84	1	466	40	9	11	38	1.74
311950--312270	152	2.1	152	85	2	439	42	7	9	39	1.67
313552--313967	167	2.5	167	82	5	513	50	8	10	30	1.66
313498--313967	166	2.8	166	80	6	515	51	8	10	30	1.66
315303--315522	35	6.3	35	85	2	253	45	12	20	21	1.84
315284--315496	105	2.0	105	87	1	302	46	13	18	20	1.83
315333--315584	35	7.3	35	82	3	197	45	12	21	21	1.84
315305--315552	70	3.5	70	83	0	280	45	12	20	21	1.84
315326--315624	105	2.9	105	80	4	277	44	13	21	21	1.86
315324--315618	35	8.5	34	79	5	191	44	13	21	20	1.85
315488--315614	67	1.9	67	80	0	146	40	14	24	20	1.89
319859--319883	13	1.9	13	100	0	50	36	16	16	32	1.90
320667--320702	19	1.9	18	94	5	63	0	0	16	83	0.65
320675--320704	14	2.1	14	93	0	51	0	0	16	83	0.65
320669--320710	6	6.8	6	82	15	50	2	0	16	80	0.81
320646--320734	15	6.2	13	73	18	63	4	4	10	80	0.98
325740--325813	28	2.6	28	82	0	76	24	18	32	24	1.97
325797--325966	52	3.3	52	76	9	168	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325730--326138	212	1.9	214	86	5	587	30	13	26	28	1.94
325953--326023	27	2.6	27	88	2	97	22	21	32	23	1.98
325683--326036	107	3.3	105	70	12	292	30	14	27	26	1.95
328476--328502	13	2.1	13	100	0	54	40	14	14	29	1.86
328522--328621	19	5.9	18	73	26	103	38	15	12	35	1.84
328544--328600	13	3.9	13	76	24	60	35	15	14	35	1.88
328525--328619	32	3.0	32	98	0	181	36	15	12	34	1.86
330392--330418	13	2.1	13	100	0	54	29	14	14	40	1.86
339637--339692	19	3.2	19	80	19	84	37	25	5	32	1.78
339637--339683	15	2.8	16	87	12	60	36	25	6	31	1.81
339637--339709	34	2.1	34	82	5	85	42	23	4	30	1.73
341835--341888	20	2.7	20	88	0	81	42	12	14	29	1.83
341911--341962	20	2.7	20	85	8	72	38	17	13	30	1.88
343166--344448	639	2.0	638	93	1	2167	34	13	18	33	1.90
347080--347122	22	2.0	22	90	4	70	25	25	0	48	1.51
349598--349624	13	2.1	13	100	0	54	29	14	14	40	1.86
349580--349643	32	2.0	32	87	9	94	28	14	15	42	1.86
349610--349666	20	2.9	20	89	2	80	35	10	17	36	1.84
351366--352101	311	2.4	311	80	6	803	38	21	16	23	1.92
351468--352040	310	1.8	311	84	5	775	39	21	15	22	1.91
351366--352076	155	4.6	157	78	5	687	38	21	16	22	1.93
352598--352967	128	2.9	127	82	6	383	39	14	12	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354661--355019	168	2.1	169	80	5	397	43	14	23	18	1.87
355055--355312	83	3.1	84	71	8	220	45	12	25	17	1.82
354795--355270	253	1.9	251	85	5	656	44	13	23	18	1.84
354660--355271	84	7.3	83	67	8	281	44	13	23	18	1.86
355292--355594	84	3.6	82	76	8	274	34	14	30	21	1.93
355450--355569	41	2.9	41	67	13	102	36	15	27	20	1.92
355733--356431	85	8.2	85	77	3	467	34	17	26	21	1.95
355728--355975	42	5.9	42	74	5	169	35	18	26	19	1.95
356453--357115	43	15.4	42	78	6	539	36	16	29	18	1.93
356453--357115	129	5.1	127	80	6	654	36	16	29	18	1.93
356453--357133	86	7.9	85	80	6	613	36	16	28	18	1.93
357135--357276	42	3.4	42	75	5	117	34	16	28	21	1.94
357198--357559	84	4.3	84	75	1	301	37	17	27	17	1.92
357198--357559	42	8.6	42	75	7	250	37	17	27	17	1.92
357216--357559	127	2.7	125	79	5	341	38	17	27	17	1.92
357254--357559	169	1.8	169	83	1	407	38	17	27	16	1.91
364658--365096	166	2.6	164	82	5	533	53	7	9	29	1.60
366412--366519	20	5.8	19	75	18	102	28	17	12	40	1.87
366429--366498	33	2.1	33	97	0	131	28	18	12	40	1.88
366412--366518	53	2.0	53	85	7	146	28	16	13	41	1.86
366449--366479	13	2.4	13	94	0	53	32	16	12	38	1.86
368825--368993	51	3.3	51	84	3	180	28	25	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368929--369312	76	4.9	78	83	5	415	26	23	14	34	1.94
368977--369312	155	2.2	152	82	7	417	26	23	15	34	1.94
373770--374482	55	12.5	55	84	5	773	26	26	20	26	1.99
374074--374172	33	3.2	33	61	28	79	23	23	17	36	1.95
374082--374184	36	3.2	36	60	28	84	26	25	18	30	1.98
373798--374479	352	2.0	341	87	4	974	26	26	19	26	1.99
374461--374564	45	2.4	43	77	9	104	21	25	13	39	1.90
375135--375224	19	5.1	18	71	22	75	35	11	15	37	1.83
375160--375232	32	2.3	32	95	0	128	34	10	17	36	1.85
375276--375301	13	2.0	13	100	0	52	30	15	15	38	1.88
375279--375323	21	2.1	21	91	0	72	28	20	13	37	1.90
375256--375322	34	2.0	33	88	2	98	25	16	14	43	1.86
377669--377790	51	2.4	52	82	8	144	26	30	14	28	1.95
377722--377991	79	3.4	79	81	3	346	27	25	14	32	1.95
386957--387050	1	94.0	1	69	0	53	84	9	5	1	0.83
386956--387036	22	3.7	22	73	20	71	82	12	3	1	0.85
388152--388498	121	2.9	120	84	7	415	25	27	19	27	1.99
388126--388498	182	2.1	170	82	9	437	26	27	19	26	1.99
388131--388504	61	6.3	60	77	11	348	26	27	20	25	1.99
388485--388586	45	2.4	41	82	11	107	20	29	13	36	1.91
388518--388619	42	2.4	42	85	1	123	15	25	12	46	1.82
389533--389626	20	4.7	20	88	5	120	27	15	13	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391911--392089	51	3.5	51	82	2	191	29	25	10	35	1.89
392078--392407	79	4.3	76	85	6	432	26	24	15	33	1.95
392025--392407	79	4.9	78	83	5	429	26	24	14	33	1.94
393449--393591	59	2.5	60	81	5	168	25	13	10	50	1.74
393857--393971	58	2.0	58	81	8	135	31	15	13	40	1.86
396163--396218	19	2.9	19	83	2	67	35	14	19	30	1.91
396203--396228	13	2.0	13	100	0	52	38	15	15	30	1.88
397131--397195	33	2.0	33	90	0	103	26	15	30	27	1.96
404841--404865	13	1.9	13	100	0	50	32	16	16	36	1.90
408896--408948	20	2.6	21	84	3	72	28	16	15	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13