genome.fa.s84.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1956163--1956723	34	16.9	33	83	10	600	21	33	12	32	1.91
1956194--1956733	129	4.1	129	79	15	577	21	33	12	32	1.91
1956163--1956733	163	3.5	164	81	12	620	21	33	12	32	1.91
1956386--1956439	27	2.0	27	92	0	90	22	40	14	22	1.90
1956756--1957252	49	10.4	49	87	5	696	25	25	17	31	1.97
1958035--1958101	33	2.0	33	88	0	98	34	11	13	40	1.81
1958055--1958079	13	1.9	13	100	0	50	36	16	16	32	1.90
1958143--1958167	13	1.9	13	100	0	50	32	16	16	36	1.90
1963041--1963094	20	2.7	20	97	0	99	37	11	18	33	1.86
1966924--1966948	13	1.9	13	100	0	50	36	16	16	32	1.90
1967941--1968009	22	3.2	22	62	25	56	30	17	26	26	1.97
1967875--1968103	49	4.7	49	86	8	317	31	17	24	26	1.97
1968096--1968184	30	3.0	30	74	19	96	16	16	35	30	1.92
1968124--1968365	117	2.1	117	88	1	360	21	17	29	30	1.97
1968108--1968365	88	2.9	88	85	6	335	21	18	29	30	1.97
1968105--1968549	57	7.5	57	74	10	310	24	17	29	27	1.97
1968124--1968551	30	14.6	29	76	10	325	25	17	29	28	1.97
1970021--1970058	11	3.5	11	83	16	53	2	0	10	86	0.66
1970020--1970079	18	3.4	17	80	8	75	1	3	8	86	0.74
1981706--1981821	52	2.3	51	95	1	205	30	17	18	34	1.93
1981706--1981841	52	2.6	52	87	5	188	31	16	18	33	1.94
1981830--1981854	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981895--1981961	33	2.0	33	88	0	98	40	13	11	34	1.81
1981917--1981941	13	1.9	13	100	0	50	32	16	16	36	1.90
1990047--1990543	40	12.5	40	75	9	331	15	19	15	49	1.79
1990091--1990543	199	2.3	199	80	5	488	14	18	16	50	1.78
1990093--1990543	80	5.7	80	76	6	389	14	18	16	50	1.78
1990641--1990832	104	1.8	105	83	7	257	21	23	10	44	1.83
1991411--1991453	20	2.1	20	82	4	50	41	6	16	34	1.75
1991418--1991461	20	2.1	21	87	4	63	43	6	15	34	1.74
1993933--1994168	97	2.4	97	80	4	271	27	24	13	35	1.93
1995368--1995798	154	2.8	152	81	6	467	28	15	17	38	1.90
1997579--1997615	15	2.5	15	100	0	74	54	10	8	27	1.63
1997944--1997996	20	2.7	20	87	0	70	30	20	13	35	1.91
1998029--1998080	19	2.7	19	90	3	77	36	13	19	30	1.90
1998065--1998091	13	2.1	13	100	0	54	40	14	14	29	1.86
1999155--1999180	13	2.0	13	100	0	52	38	15	15	30	1.88
1999137--1999200	32	2.0	33	90	3	103	42	15	14	28	1.86
2003851--2003892	22	1.9	22	95	0	75	54	2	0	42	1.13
2003886--2003928	18	2.4	18	80	0	50	69	0	2	27	1.00
2003964--2004030	13	4.8	13	78	10	71	25	20	13	40	1.89
2003970--2004053	43	2.0	43	88	4	125	26	19	11	42	1.85
2004656--2004799	61	2.4	61	90	2	218	63	14	19	2	1.39
2004729--2004776	18	2.6	17	81	18	53	68	8	20	2	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2004663--2004776	20	5.7	19	70	25	69	65	13	20	0	1.31
2004724--2004760	18	1.9	18	89	10	56	67	10	18	2	1.32
2005714--2006152	179	2.4	179	88	2	635	36	11	12	39	1.79
2006229--2006254	13	2.0	13	100	0	52	53	0	7	38	1.30
2007855--2007880	13	2.0	13	100	0	52	38	15	15	30	1.88
2008339--2008405	37	1.9	35	88	11	102	32	11	25	29	1.92
2013309--2013334	13	2.0	13	100	0	52	38	15	15	30	1.88
2013793--2013859	37	1.9	35	88	11	102	32	11	25	29	1.92
2018591--2018646	19	2.9	19	86	2	85	39	14	19	26	1.90
2019571--2019600	14	2.1	14	93	0	51	40	30	16	13	1.87
2022536--2022719	79	2.3	78	80	2	199	32	16	27	24	1.96
2022691--2022747	28	2.0	29	82	3	71	31	15	28	24	1.96
2022732--2023067	52	6.4	51	73	13	243	30	12	26	30	1.92
2022663--2023069	212	1.9	212	88	3	622	31	13	27	28	1.93
2022883--2022958	27	2.7	29	90	6	113	21	19	34	25	1.96
2022617--2023009	107	3.7	105	72	10	314	30	13	27	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!