genome.fa.s84.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622793--622829	18	2.1	18	89	0	56	21	16	16	45	1.84
623005--623102	48	2.0	48	86	3	135	21	14	16	47	1.81
623110--623415	58	5.3	58	75	12	225	26	11	12	49	1.75
623127--623415	118	2.5	116	78	7	298	26	11	12	49	1.74
624570--624641	35	2.1	35	94	0	126	48	5	13	31	1.66
628558--628615	26	2.2	26	96	0	107	27	17	15	39	1.90
632236--632286	20	2.5	20	96	0	93	37	15	11	35	1.84
632322--632359	13	2.9	13	92	0	58	39	15	7	36	1.77
633568--634203	317	2.0	317	90	0	986	30	22	22	25	1.99
634656--634681	13	2.0	13	100	0	52	46	0	23	30	1.53
635323--635363	19	2.1	20	86	4	57	26	14	17	41	1.88
640565--640669	14	7.6	14	69	21	69	32	2	5	59	1.36
641049--641092	19	2.4	18	82	14	54	50	0	0	50	1.00
641124--641166	21	2.0	22	82	13	54	65	0	0	34	0.93
641252--641309	30	1.9	31	86	10	84	53	12	10	24	1.68
642369--642422	20	2.7	20	91	5	83	31	12	18	37	1.89
644339--644364	13	2.0	13	100	0	52	30	15	15	38	1.88
645012--645213	61	3.4	61	69	18	199	30	28	3	37	1.74
645007--645241	117	2.0	117	99	0	461	31	26	3	38	1.73
647018--647056	13	3.0	13	96	0	69	35	15	15	33	1.89
649403--649447	21	2.1	21	84	8	56	22	20	4	53	1.63
651664--651689	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656181--656220	13	3.1	13	88	0	62	30	15	17	37	1.90
664977--665003	13	2.1	13	100	0	54	29	14	14	40	1.86
667472--667528	19	2.9	19	81	2	69	31	15	17	35	1.92
667557--667616	13	5.1	13	75	22	69	31	11	16	40	1.85
667557--667619	33	1.9	33	96	0	117	31	11	17	39	1.85
671291--671497	76	2.7	78	78	9	214	34	15	15	34	1.90
677805--678286	155	3.1	149	75	12	427	38	18	18	24	1.93
679834--679881	10	5.0	9	78	12	51	8	18	0	72	1.08
679851--679897	12	4.0	11	83	10	58	6	25	0	68	1.13
680351--680761	168	2.5	167	82	6	460	51	7	9	30	1.63
680380--680930	164	3.3	164	80	6	472	50	7	9	31	1.64
683076--683169	32	2.9	32	96	1	170	34	11	18	36	1.87
683074--683169	13	5.7	18	71	28	86	33	11	17	37	1.86
683247--683375	52	2.5	52	98	0	249	34	18	18	27	1.95
684583--684608	13	2.0	13	100	0	52	30	15	15	38	1.88
684563--684626	32	2.0	33	87	3	94	29	15	15	39	1.89
687153--687178	13	2.0	13	100	0	52	38	15	15	30	1.88
687380--687427	8	6.0	8	100	0	96	62	25	0	12	1.30
689281--689311	15	2.1	15	93	0	53	12	22	16	48	1.80
700323--700916	202	2.9	202	96	0	1109	40	11	15	33	1.83
703917--703999	41	2.0	41	97	0	157	49	6	4	39	1.49
705546--705587	13	3.3	12	87	9	57	85	0	14	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705546--705591	23	2.0	23	91	0	74	82	0	17	0	0.67
705546--705591	11	4.1	11	88	5	65	82	0	17	0	0.67
705550--705598	11	4.3	11	87	7	53	79	0	20	0	0.73
709888--709921	18	1.9	18	94	5	61	50	0	2	47	1.16
709939--709982	22	1.9	24	82	17	58	47	2	4	45	1.35
710823--710866	22	2.0	22	100	0	88	36	4	9	50	1.55
711274--711299	2	13.0	2	100	0	52	50	0	0	50	1.00
712153--712225	21	3.5	21	81	1	85	63	10	6	19	1.49
712658--712683	6	4.3	6	100	0	52	0	19	15	65	1.27
713916--713942	2	13.5	2	100	0	54	0	48	0	51	1.00
719061--719096	2	18.0	2	100	0	72	50	0	50	0	1.00
721971--722015	17	2.4	18	82	14	56	62	0	2	35	1.08
721988--722021	17	2.0	17	100	0	68	58	0	0	41	0.98
722933--722974	22	1.9	22	85	9	59	45	0	0	54	0.99
722951--723001	21	2.5	20	82	17	61	49	1	0	49	1.12
723582--723609	3	9.3	3	100	0	56	67	0	0	32	0.91
724943--725533	153	3.9	153	82	3	647	49	9	7	32	1.63
725391--725452	28	2.1	29	85	5	81	56	6	1	35	1.35
726392--726506	51	2.3	51	90	4	180	28	15	13	42	1.84
727388--727426	20	2.0	20	84	0	51	25	15	7	51	1.70
728876--728900	13	1.9	13	100	0	50	32	16	16	36	1.90
728888--728940	20	2.6	21	82	8	65	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735150--735185	13	2.8	13	86	0	54	33	13	16	36	1.89
739661--739787	52	2.4	52	96	0	236	27	17	18	36	1.94
739661--739807	52	2.8	51	90	4	224	29	17	19	34	1.94
739796--739820	13	1.9	13	100	0	50	36	16	16	32	1.90
739863--739960	19	5.8	18	68	28	72	36	17	11	34	1.85
739882--739938	13	3.9	13	72	24	51	33	19	12	35	1.89
739861--739958	32	3.0	32	92	1	160	35	17	11	35	1.85
740821--741851	43	21.9	49	79	12	1087	30	18	26	25	1.98
740926--741852	92	10.0	90	85	10	865	30	17	26	25	1.97
741857--742118	98	2.7	97	91	5	413	17	17	35	29	1.93
741857--742118	33	8.0	32	86	9	352	17	17	35	29	1.93
742124--743030	33	27.6	33	80	7	807	33	14	33	19	1.91
742119--743030	131	7.0	129	91	2	1272	33	13	33	19	1.91
743531--743765	116	2.0	116	97	0	443	34	17	13	34	1.88
744129--744172	16	2.9	16	80	10	56	2	11	4	81	0.92
747283--747349	37	1.9	35	88	11	102	29	25	11	32	1.92
747811--747836	13	2.0	13	100	0	52	30	15	15	38	1.88
749731--749755	13	1.9	13	100	0	50	32	16	16	36	1.90
752948--753014	37	1.9	35	88	11	102	29	25	11	32	1.92
753476--753501	13	2.0	13	100	0	52	30	15	15	38	1.88
758149--758277	52	2.5	52	97	0	240	29	17	17	34	1.94
758149--758297	52	2.9	51	91	4	228	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758353--758482	19	7.8	18	67	29	92	36	19	10	33	1.86
758372--758460	13	5.9	13	68	27	52	33	20	11	34	1.88
758351--758480	32	4.0	32	95	1	224	35	19	10	34	1.86
759591--759615	13	1.9	13	100	0	50	32	16	16	36	1.90
759603--759655	20	2.6	21	82	8	65	37	15	16	30	1.90
759704--759729	13	2.0	13	100	0	52	38	15	15	30	1.88
759686--759749	33	2.0	32	90	3	101	39	20	14	26	1.90
765851--766073	105	2.1	105	96	1	412	34	15	18	31	1.92
766079--766103	13	1.9	13	100	0	50	32	16	16	36	1.90
766059--766126	33	2.1	33	89	8	104	36	16	14	32	1.89
773715--773754	8	5.2	8	90	6	57	87	10	0	2	0.63
773707--773762	7	8.0	7	82	7	69	82	14	1	1	0.84
775060--775896	28	29.5	28	82	3	953	27	28	17	26	1.98
775057--775909	86	10.0	85	82	5	902	26	28	18	26	1.98
776668--776856	101	1.9	101	82	2	236	26	22	29	22	1.99
777080--777155	30	2.5	31	91	6	120	26	15	14	43	1.85
783254--783667	79	5.3	78	77	7	351	26	21	14	37	1.92
783327--783631	157	1.9	159	83	2	391	27	21	14	36	1.92
787334--788002	28	23.4	28	82	5	689	22	17	29	30	1.97
787334--788005	85	7.8	85	83	7	763	22	17	29	29	1.97
789211--789271	14	4.4	14	79	10	63	3	3	9	83	0.87
789236--789274	8	5.0	8	81	6	53	2	0	10	87	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789211--789273	11	5.3	11	78	21	56	3	3	9	84	0.85
789211--789273	26	2.5	26	86	2	83	3	3	9	84	0.85
789233--789276	14	2.8	16	90	10	65	2	0	11	86	0.66
792582--792907	163	2.0	158	84	6	415	34	10	13	41	1.80
798106--798144	15	2.6	16	84	8	55	66	0	0	33	0.92
798454--798506	19	2.7	20	88	2	72	30	15	16	37	1.90
798554--798581	13	2.2	13	100	0	56	32	14	14	39	1.86
798538--798603	33	2.0	32	85	11	89	33	13	16	36	1.88
800192--800225	3	11.3	3	87	0	50	38	0	32	29	1.58
804779--804814	13	2.8	13	100	0	72	38	16	8	36	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13