genome.fa.s84.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  2025335

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1500 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408936--408964	13	2.2	13	100	0	58	37	13	17	31	1.89
409514--409557	21	2.0	21	86	4	61	31	29	2	36	1.70
411383--411407	13	1.9	13	100	0	50	36	16	16	32	1.90
417323--417441	51	2.3	51	88	0	184	29	12	28	29	1.93
417425--417500	28	2.7	28	87	4	109	27	19	30	22	1.98
417484--417599	51	2.3	51	86	0	160	30	12	25	31	1.92
417535--417836	79	3.8	78	87	0	388	31	14	26	28	1.95
417535--417835	158	1.9	158	86	2	435	31	13	26	28	1.94
417772--417940	51	3.3	50	82	11	193	33	12	24	28	1.92
420041--420112	20	3.6	20	94	3	119	41	15	16	26	1.88
420151--420176	13	2.0	13	100	0	52	38	15	15	30	1.88
428648--429051	55	7.0	55	82	9	454	26	28	19	25	1.98
428617--429051	121	3.8	117	82	9	527	26	28	18	25	1.98
428617--429062	61	7.6	60	83	9	489	26	28	18	26	1.98
429090--429215	60	2.1	60	88	7	184	23	28	19	28	1.98
428936--429356	154	2.7	154	91	1	675	24	28	20	26	1.99
429226--429479	61	4.3	59	83	8	313	25	27	22	24	2.00
429226--429478	122	2.1	115	89	6	382	25	26	22	24	2.00
430385--430441	20	2.9	20	79	12	64	36	10	12	40	1.77
430490--430564	20	3.8	19	85	7	96	28	17	13	41	1.87
431084--431133	23	2.1	24	85	3	66	44	46	4	6	1.47
432841--433005	51	3.2	51	77	6	165	29	23	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432941--433242	79	3.8	79	87	5	389	28	25	14	31	1.94
432941--433242	158	1.9	158	87	5	450	28	25	14	31	1.94
433178--433294	51	2.3	51	83	7	148	29	24	13	32	1.94
433281--433353	28	2.6	28	87	10	105	26	32	16	24	1.96
433150--433488	158	2.1	158	81	3	387	27	26	14	31	1.95
433336--433455	51	2.4	51	86	0	177	30	29	13	27	1.94
439360--439706	79	4.4	79	75	11	207	35	14	22	27	1.94
439435--439748	158	2.0	157	83	7	395	35	14	22	27	1.93
439483--439745	79	3.3	78	78	6	253	35	14	22	26	1.93
439714--439809	50	1.9	50	86	0	138	38	14	22	23	1.92
442105--442131	13	2.1	13	100	0	54	37	14	18	29	1.91
442113--442168	20	2.8	20	86	0	76	50	16	8	25	1.74
450775--450872	20	4.3	20	71	24	70	44	11	15	28	1.80
450823--450876	20	2.7	20	94	0	99	44	9	16	29	1.79
451855--451916	20	3.0	20	82	13	72	37	6	20	35	1.79
451855--451920	21	3.2	21	83	10	73	37	6	21	34	1.78
453757--453781	8	3.1	8	100	0	50	12	0	0	88	0.53
453865--453906	22	1.9	22	85	9	59	14	19	0	66	1.25
454117--454165	17	3.0	16	82	8	55	38	2	0	59	1.09
457366--457398	2	16.5	2	93	0	57	48	0	0	51	1.00
458537--458588	20	2.5	20	84	3	68	38	21	17	23	1.93
462753--462805	13	4.5	13	73	26	64	37	16	13	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462753--462822	33	2.1	33	89	10	108	37	18	14	30	1.90
462851--462906	19	2.9	19	91	2	85	35	17	16	30	1.92
471584--471636	13	4.5	13	71	26	55	39	16	11	32	1.85
471584--471652	33	2.1	33	86	5	95	39	18	10	31	1.84
471685--471735	19	2.6	20	84	6	68	39	17	11	31	1.86
474165--474200	18	2.0	18	88	0	54	47	5	11	36	1.63
480067--480128	32	1.9	33	90	3	99	43	11	12	32	1.79
482329--482378	21	2.3	21	80	10	57	56	4	18	22	1.58
484176--484206	15	2.1	15	93	0	53	48	16	22	12	1.80
486258--486282	13	1.9	13	100	0	50	32	20	16	32	1.94
488837--488862	13	2.0	13	100	0	52	38	15	15	30	1.88
488821--488882	32	1.9	33	93	3	108	45	16	11	27	1.81
492931--492956	13	2.0	13	100	0	52	30	15	15	38	1.88
492995--493067	20	3.6	20	81	9	76	30	16	13	39	1.87
493015--493070	20	2.8	20	89	5	78	30	16	14	39	1.88
493663--493706	21	2.1	21	83	8	54	25	31	4	38	1.76
495511--495538	13	2.2	13	100	0	56	35	14	17	32	1.90
495522--495560	20	2.0	20	94	0	69	46	10	15	28	1.78
497604--497634	15	2.1	15	93	0	53	12	22	16	48	1.80
499438--499482	21	2.1	21	84	8	56	22	20	4	53	1.63
501685--501710	13	2.0	13	100	0	52	30	15	15	38	1.88
506780--506823	21	2.0	22	95	4	81	36	18	9	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512549--512915	49	7.5	48	72	11	178	43	11	12	32	1.79
512762--512915	49	3.2	48	83	11	199	40	12	12	33	1.82
514383--514441	21	2.8	20	72	25	59	40	5	15	38	1.69
514553--514592	18	2.3	18	91	4	64	32	7	10	50	1.64
519755--519993	78	3.1	78	76	7	234	42	14	13	29	1.84
521604--521687	19	4.7	19	80	16	108	30	11	17	39	1.86
521625--521649	13	1.9	13	100	0	50	36	16	16	32	1.90
521606--521668	32	2.0	32	93	0	108	31	12	19	36	1.89
521736--521885	52	2.9	52	89	2	230	36	18	17	27	1.93
529028--529074	20	2.3	20	75	7	51	34	6	14	44	1.71
536190--536215	13	2.0	13	100	0	52	38	15	15	30	1.88
536172--536235	32	2.0	33	87	3	94	42	14	14	29	1.84
540263--540293	15	2.1	15	93	0	53	48	16	22	12	1.80
544938--544963	13	2.0	13	100	0	52	38	15	15	30	1.88
544920--544983	32	2.0	33	90	3	103	42	15	14	28	1.86
545016--545055	20	2.1	19	90	4	62	42	15	7	35	1.75
547738--547877	73	1.9	73	82	0	172	40	13	17	27	1.88
554840--554888	24	2.0	24	100	0	98	36	18	8	36	1.81
560618--560673	19	2.9	19	86	2	76	32	17	12	37	1.88
569573--569623	19	2.6	20	87	9	70	29	19	13	37	1.90
574401--574453	28	1.9	27	88	11	81	50	13	3	32	1.59
574628--574704	25	2.9	27	84	5	86	40	2	14	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574648--574700	27	2.0	26	89	7	81	43	1	11	43	1.51
574648--574861	26	7.9	27	72	13	125	47	4	10	37	1.59
574679--574773	38	2.4	38	75	13	95	50	4	10	34	1.56
578789--578816	13	2.2	13	100	0	56	39	14	14	32	1.86
578771--578835	33	2.0	33	93	3	114	38	15	12	33	1.85
583372--583592	104	2.1	103	82	3	273	28	19	13	38	1.89
589340--589386	18	2.8	16	81	15	51	51	2	2	44	1.25
592583--592640	22	2.6	22	76	17	66	31	20	12	36	1.89
596694--596866	78	2.2	78	86	0	238	28	13	19	38	1.90
596828--596985	79	2.0	79	90	2	246	34	13	14	37	1.85
597796--597868	20	3.7	19	81	7	76	39	13	16	30	1.87
597796--597849	19	2.8	20	82	2	74	38	12	16	31	1.87
598427--598460	17	2.0	17	100	0	68	52	5	0	41	1.25
598434--598486	26	2.0	26	96	0	97	54	5	0	39	1.24
600322--600361	13	3.1	13	85	0	62	37	12	15	35	1.85
600760--600784	13	1.9	13	100	0	50	32	16	16	36	1.90
600866--600890	13	1.9	13	100	0	50	36	16	16	32	1.90
600811--600943	66	2.0	66	95	0	239	27	18	24	30	1.97
600950--600975	13	2.0	13	100	0	52	38	15	15	30	1.88
607140--607175	13	2.8	13	95	0	63	33	16	16	33	1.92
609624--609648	13	1.9	13	100	0	50	32	16	16	36	1.90
609636--609688	20	2.6	21	76	8	56	39	16	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609749--609773	13	1.9	13	100	0	50	36	16	16	32	1.90
616747--616875	52	2.5	52	94	0	231	27	17	18	36	1.93
616884--616908	13	1.9	13	100	0	50	36	16	16	32	1.90
616961--617025	19	3.7	19	71	23	70	36	16	13	32	1.89
616953--617023	32	2.2	32	94	0	124	35	18	14	32	1.90
618361--618451	33	2.8	33	88	6	114	31	17	14	36	1.90
618379--618458	33	2.4	33	91	0	133	33	17	15	33	1.91
620061--620130	8	8.5	8	78	12	70	78	1	4	15	0.98
620151--620182	13	2.5	13	94	0	55	46	0	12	40	1.42
622441--622479	11	3.5	11	86	13	53	7	15	7	69	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13